View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_82 (Length: 328)
Name: NF8889_low_82
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_82 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 28497198 - 28496885
Alignment:
| Q |
1 |
caaacttgcatcttcatctctgcaacagtaactctactattaacacgtaaatataatagatgtctaaattcagaccgtaaacactcttcatcctgctaat |
100 |
Q |
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| T |
28497198 |
caaacttgcatcttcatctctgcaacagtaactctactattaacacgtaaatataatagatttctaaattcagaccgtaaacactctccatcctgctaat |
28497099 |
T |
|
| Q |
101 |
gatcacatcagaaacacgtactttatccatctccaataatgcaacccattatatgacgaaaaactacttctgtaaaatttgaaattaagttattcaaaat |
200 |
Q |
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||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28497098 |
gatcacatcagaaacacgtgctttctccatctccaataatggaacccattatatgacgaaaaattacttctgtaaaatttgaaattaagttattcaaaat |
28496999 |
T |
|
| Q |
201 |
caaacatgctgacgttgtgcaaacaatttctaataaaattgacaaaactttataaattaaatagtattattggcgtccttcatacaacnnnnnnnagatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||| |
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| T |
28496998 |
caaacatgctgacgttgtgcaaacaatttctaataaaattgacaaaactttataaattaaatagtattattggtgtccttcatataactttttttagatt |
28496899 |
T |
|
| Q |
301 |
tcacgttattctct |
314 |
Q |
| |
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||||||| |||||| |
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| T |
28496898 |
tcacgtttttctct |
28496885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 28496454 - 28496170
Alignment:
| Q |
1 |
caaacttgcatcttcatctctgcaacagtaactctactattaacacgtaaatataatagatgtctaaattcagaccgtaaacactcttcatcctgctaat |
100 |
Q |
| |
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|||||||||||| |||||||||||| |||||| ||||||||||||| |||||| || ||||| |||| ||| |||||||||||||| ||||| |||||| |
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| T |
28496454 |
caaacttgcatcctcatctctgcaaaagtaacgctactattaacacataaataaaaaagatgcctaagctcaaaccgtaaacactctccatccagctaat |
28496355 |
T |
|
| Q |
101 |
gatcacatcagaaacacgtactttatccatctccaataatgcaacccattatatgacgaaaaactacttctgtaaaa-tttgaaattaagttattcaaaa |
199 |
Q |
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||||||||||||||||| | || |||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| ||||| |
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| T |
28496354 |
gatcacatcagaaacacatgtgttctccatctccaataatgcaacccattatatgacaaaaagttacttctgtaaaaatttgaaattaagttatacaaaa |
28496255 |
T |
|
| Q |
200 |
tcaaacatgctgacgttgtgcaaacaatttctaataaaattgacaaaactttataaattaaatagtattattggcgtccttcata |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28496254 |
tcaaacatgctgacgttgtgcaaacaatttctaataaaattgacaaaactttataaattaaataatattattggcgtccttcata |
28496170 |
T |
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