View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_85 (Length: 327)
Name: NF8889_low_85
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_85 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 45728960 - 45729107
Alignment:
| Q |
24 |
agctcaacgtcattgcaggttaatatctccatttctccatggaaaacgaatatggcgaatataaatannnnnnn--atatatatagcccctacatatctg |
121 |
Q |
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| T |
45728960 |
agctcaacgtcattgcag--taatatctccatttctccatggaaaacgaatatggcgaatataaatatttttttttatatatatagcccctacatatctg |
45729057 |
T |
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| Q |
122 |
agcattaagtttcattat---taagcaattacacaaatcaaagtagtgac |
168 |
Q |
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| T |
45729058 |
agcattaagtttcattattaataagcaattacacaaatcaaagtagtgac |
45729107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 45729173 - 45729250
Alignment:
| Q |
234 |
tgaagagattccttctcgtagtaaattgtctcatattatccctaggtacctgcagtgctcccctcataatgcgtctct |
311 |
Q |
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| T |
45729173 |
tgaagagattccttctcgtagtaaattgtctcatattatccctaggtacctgcagtgctcccctcataatgcgtctct |
45729250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 45724870 - 45724924
Alignment:
| Q |
114 |
catatctgagcattaagtttcattattaagcaattacacaaatcaaagtagtgac |
168 |
Q |
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| T |
45724870 |
catatgtgagcattaagtttcattattaagcaatcacacaaaccaaagtagtgac |
45724924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 45724991 - 45725061
Alignment:
| Q |
241 |
attccttctcgtagtaaattgtctcatattatccctaggtacctgcagtgctcccctcataatgcgtctct |
311 |
Q |
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| T |
45724991 |
attccttctgatagtaaattgtctgatattagccctaggtaactccggtggtcccctaataatgcgtctct |
45725061 |
T |
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