View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_9 (Length: 1053)
Name: NF8889_low_9
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 533; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 19 - 711
Target Start/End: Complemental strand, 2097271 - 2096595
Alignment:
| Q |
19 |
atcatgtgggagtttcaaaggctctttatctgaaggagtttttgaggnnnnnnnnacgagttttaggtctaagaaaaaccaaggtttggtctggcttt-a |
117 |
Q |
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| T |
2097271 |
atcatgtgggagtttcaaaggctctttatctgaaggagtttttgag-ttttttttacgagtcttaggtctaagaaaaaccaaagtttggtctggctttta |
2097173 |
T |
|
| Q |
118 |
gtttggcacgttgttgtgtggaccatttggaatttctgcaatgaaatgatttaatttctccaggggtcttggtttggctgtatcattggttctctctgat |
217 |
Q |
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| T |
2097172 |
gtttggcacgttgttgtgtgaaccatttggaatttctgcaatgaaatgatttaatttctccaggggtcttggtttggctgtatcattggttctctctgat |
2097073 |
T |
|
| Q |
218 |
gttgggggttctgtggggggtttctctgctgtttcctctgatttaaaaattagtcccttgacacttattctcgaattgctatgattgctttgctttgaat |
317 |
Q |
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| T |
2097072 |
gttgggggttctgtggggggtttctctgctgtttcctctgatttaaaaattagtcccttgacacttattctcgaattgctatgattgctttgctttgaa- |
2096974 |
T |
|
| Q |
318 |
gtatgctttgaactcctgaaccctttctttgaaataattattgaatttcaaaaatttaaatccaattgaacttcttgtcgagtaactatccttcatatga |
417 |
Q |
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| T |
2096973 |
------------ctcctgaaccctgtctttgaaataattattgaatttcaaaaatttaaatccaattgaacttcttgtcgagtaactatccttcatatga |
2096886 |
T |
|
| Q |
418 |
tatttcaagataattgaacttcttagatggccaagtatgttggttaagttcaacactgatttccttgataagctacattcatttaaagctctttttgtca |
517 |
Q |
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| T |
2096885 |
tatttcaagataattgaacttcttagatggccaagtatgttggttaagttcaacaccgatttccttgataagctgcattcatttaaagctctatttgtca |
2096786 |
T |
|
| Q |
518 |
tttgcagggacagaagtatatacatat--atgcatacatacatttaatcaaaactctagtaatctaaatcaacaaatttgtttcaatcttaaaatcagta |
615 |
Q |
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| T |
2096785 |
tttgcagggacagaagtatatacatatacatgcatacatacatttaatcaaaactctagtaatccaaatcaacaaatttgtttcaatcttaaaatcagta |
2096686 |
T |
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| Q |
616 |
actagagtaggccatccctgtgaaactgaaaccataactgcaaatatgacatagttgattacaatatatcatctttgtacatggtaatcatggata |
711 |
Q |
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| T |
2096685 |
actatagtaggtca-----gtgaaactgaaaccataactgcaaatatgacatagttgattacaatctatcatctttgtacatggtaattatggata |
2096595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 716 - 1029
Target Start/End: Complemental strand, 2096522 - 2096199
Alignment:
| Q |
716 |
caagtaaattttgcgtcatagtaactcattgtttgtctagatagaaatcagtcacagagatcaaaatatttgatctttatatggattttcattacttaat |
815 |
Q |
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| T |
2096522 |
caagtaaattttgtgtcatagtaactcattgtttgtctagatagaaatcagtcacagagatcaaaatatttgatcgttatgtggattttcattacttaat |
2096423 |
T |
|
| Q |
816 |
ta-------atta-ctggctgattatctttatgaattgaaatttaacatgacttattttgtgcaataaaattggtggaaagtgtgagtatagtg--caag |
905 |
Q |
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| T |
2096422 |
tactggctgattatctgattggttatctttatgaattgaaatttaacatgacttatttagtgcactaaaattgttggaaactgcgagtgtagtgtgcaac |
2096323 |
T |
|
| Q |
906 |
ttttaatgatgataaatgtcatcagaggacaggcctttgtcattgtttatgtcttcagaagaaagtgaagattgaaaacatgttttttgtatagagaatg |
1005 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
2096322 |
ttttcatgatgataaatgtcatcagaggacaggcctctgtcattgtttatgtcttcagaagaaagtgaagattgaaaacatgttttttgaataaagaatg |
2096223 |
T |
|
| Q |
1006 |
atactgcagagcttttgttgatct |
1029 |
Q |
| |
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| T |
2096222 |
atactgtaaagcttttgttgatct |
2096199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 863 - 1031
Target Start/End: Complemental strand, 1561779 - 1561602
Alignment:
| Q |
863 |
ttttgtgcaataaaattggtggaaagtgtgagtatagtgcaagttttaatgatgataaatgtcatcagaggacaggcctttgtcattgtttatgtcttca |
962 |
Q |
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| T |
1561779 |
ttttgtgcaatacaactggtggaaaatatgagtagagtgcaagtattcatgatgcttaatgtcatcaaagggcaggc-tttgtcattgtttatgtgttta |
1561681 |
T |
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| Q |
963 |
gaagaaagtgaagattgaaaacatg----------ttttttgtatagagaatgatactgcagagcttttgttgatctac |
1031 |
Q |
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| T |
1561680 |
gaagaaagtgaagattgaaaacatgattttttttttttttttaatagagaatgatactgcaaagcttttgttgatctac |
1561602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 863 - 1031
Target Start/End: Complemental strand, 2092140 - 2091971
Alignment:
| Q |
863 |
ttttgtgcaataaaattggtggaaagtgtgagtatagtgcaagttttaatgatgataaatgtcatcagaggacaggcctttgtcattgtttatgtcttca |
962 |
Q |
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|||||||||||| || ||||||||| | |||||| |||||||| | ||||| | |||||||||||| | ||||| ||||||||||||||||| || | |
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| T |
2092140 |
ttttgtgcaatacaactggtggaaaatatgagtagagtgcaagcagtcgtgatggttaatgtcatcagaaggcaggc-tttgtcattgtttatgtgttta |
2092042 |
T |
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| Q |
963 |
gaagaaagtgaagattgaaaacatg-ttttttgtatagagaatgatactgcagagc-ttttgttgatctac |
1031 |
Q |
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| T |
2092041 |
gaagaaagtaaagattgaaaatatgatttttcgaatagagaatgatactgcaaagctttttgttgatctac |
2091971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 338 - 496
Target Start/End: Complemental strand, 2092905 - 2092747
Alignment:
| Q |
338 |
ccctttctttgaaataattattgaatttcaaaaatttaaatccaattgaacttcttgtcgagtaactatccttcatatgat---atttcaagataattga |
434 |
Q |
| |
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| T |
2092905 |
ccctgtctttgtaataattattgaatttcaaaaaattatacctgattgaacttcttg---agtaactatccttcatcttctggcatttcagcataattga |
2092809 |
T |
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| Q |
435 |
acttcttagatggccaagtatgttggttaagttcaacactgatttccttgataagctacatt |
496 |
Q |
| |
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| T |
2092808 |
acctctttgctggccaagtatgttggttaagttcaacattggtttccttaacaagctgcatt |
2092747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 449 - 496
Target Start/End: Complemental strand, 1562335 - 1562288
Alignment:
| Q |
449 |
caagtatgttggttaagttcaacactgatttccttgataagctacatt |
496 |
Q |
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| T |
1562335 |
caagtatgttggttaagttcaacattggtttccttgataagctgcatt |
1562288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 604 - 703
Target Start/End: Complemental strand, 2092645 - 2092546
Alignment:
| Q |
604 |
ttaaaatcagtaactagagtaggccatccctgtgaaactgaaaccataactgcaaatatgacata---gttgattacaatatatcatctttgtacatggt |
700 |
Q |
| |
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||||||||||||| ||||||||| |||| ||||||| ||||||||||||||| ||||||||| ||||| ||||| |||||||| |||||||||| |
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| T |
2092645 |
ttaaaatcagtaagtagagtaggtcatca--gtgaaacctaaaccataactgcaa-tatgacatactagttgactacaacctatcatctatgtacatggt |
2092549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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