View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8890_high_18 (Length: 338)
Name: NF8890_high_18
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_high_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 13539411 - 13539092
Alignment:
| Q |
11 |
gacatcaataagcatgcatgtgaaagcttgaagcttaatcatcctcaaacacatgtatgttgtatcattatcttgtagtttacgcatgtcattgtaactt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13539411 |
gacatcaataagcatgcatgtgaaagcttgaagcttaatcatcctcaaacacatgtatgttgtatcgttatcttgtagtttacgcatgtcattgtaactt |
13539312 |
T |
|
| Q |
111 |
tgttcatagtttccattctcattcttattaatgtttatgtgttgcttcataaaatgtgaaattcaggtgagaaatgaaactgcggaaaacttcttaagtt |
210 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13539311 |
tgttcgtagattccattctcattcttattaatgtttatttgttgcttcataaaatgtgaaattcaggtgagaaatgaaactgctgaaaacttcttaagtt |
13539212 |
T |
|
| Q |
211 |
tacttaaagagtgggctaagctgtgtgaagagtttgtattgaatggatctgaaagttcagattctgaaatggatgatggtgaagaagctaatgatgaagt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13539211 |
tacttaaagagtgggctaagctgtgtgaagagtttgtattgaatggatctgaaagttcagattctgatatggatgatggtgaagaagctaatgatgaagt |
13539112 |
T |
|
| Q |
311 |
tgtggatgattcatctgatt |
330 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13539111 |
tgtggatgattcatctgatt |
13539092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 31942408 - 31942271
Alignment:
| Q |
162 |
aaatgtgaaattcaggtgagaaatgaaactgcggaaaacttcttaagtttacttaaagagtgggctaagctgtgtgaagagtttgtattgaatggatctg |
261 |
Q |
| |
|
|||||| ||||||||||||| |||||| | | ||| |||| |||||| |||| |||||||||||||| || ||||| ||||||||| |||||||| | | |
|
|
| T |
31942408 |
aaatgttaaattcaggtgaggaatgaacccacagaagactttttaagtctactaaaagagtgggctaaactttgtgacgagtttgtactgaatggagcag |
31942309 |
T |
|
| Q |
262 |
aaagttcagattctgaaatggatgatggtgaagaagct |
299 |
Q |
| |
|
||||| |||||||||| || ||| |||| |||||||| |
|
|
| T |
31942308 |
aaagtacagattctgatttgaatgctggtaaagaagct |
31942271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 9392778 - 9392641
Alignment:
| Q |
162 |
aaatgtgaaattcaggtgagaaatgaaactgcggaaaacttcttaagtttacttaaagagtgggctaagctgtgtgaagagtttgtattgaatggatctg |
261 |
Q |
| |
|
|||||| ||||||||||||| |||||| | | ||| |||| ||||| ||||||||||||||||||| || ||||| ||||||||| ||||||| | | |
|
|
| T |
9392778 |
aaatgttaaattcaggtgaggaatgaacccacagaagactttttaagcctacttaaagagtgggctaaactttgtgacgagtttgtactgaatggtgcag |
9392679 |
T |
|
| Q |
262 |
aaagttcagattctgaaatggatgatggtgaagaagct |
299 |
Q |
| |
|
||||| |||||||||| || ||| || |||||||||| |
|
|
| T |
9392678 |
aaagtacagattctgatttgaatgctgctgaagaagct |
9392641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 299
Target Start/End: Complemental strand, 1340612 - 1340474
Alignment:
| Q |
161 |
aaaatgtgaaattcaggtgagaaatgaaactgcggaaaacttcttaagtttacttaaagagtgggctaagctgtgtgaagagtttgtattgaatggatct |
260 |
Q |
| |
|
||||||| ||||||||||||| |||||| | | ||| |||| |||||| | || |||||||||||||| || ||||| | ||||| | |||||| | |
|
|
| T |
1340612 |
aaaatgtcaaattcaggtgaggaatgaacccacagaagactttttaagtctgctgaaagagtgggctaaactctgtgagaaatttgtgctaaatggagca |
1340513 |
T |
|
| Q |
261 |
gaaagttcagattctgaaatggatgatggtgaagaagct |
299 |
Q |
| |
|
||||| |||||||||| || ||| ||||||||||||| |
|
|
| T |
1340512 |
gaaagcacagattctgatttgaatgctggtgaagaagct |
1340474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University