View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8890_high_3 (Length: 550)

Name: NF8890_high_3
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8890_high_3
NF8890_high_3
[»] chr1 (7 HSPs)
chr1 (72-536)||(3613663-3614127)
chr1 (37-71)||(23908237-23908271)
chr1 (37-69)||(3346740-3346772)
chr1 (44-79)||(7742928-7742963)
chr1 (37-72)||(29149690-29149725)
chr1 (40-71)||(42517443-42517474)
chr1 (37-71)||(48392546-48392580)
[»] chr3 (7 HSPs)
chr3 (71-536)||(14757485-14757950)
chr3 (37-71)||(5391410-5391444)
chr3 (37-68)||(40846059-40846090)
chr3 (41-71)||(21853148-21853178)
chr3 (37-71)||(23467637-23467671)
chr3 (37-71)||(44995111-44995145)
chr3 (41-70)||(13856052-13856081)
[»] chr6 (5 HSPs)
chr6 (37-74)||(24694793-24694830)
chr6 (37-71)||(9231996-9232030)
chr6 (37-71)||(1728039-1728073)
chr6 (37-71)||(11084562-11084596)
chr6 (37-70)||(13627494-13627527)
[»] chr4 (9 HSPs)
chr4 (37-74)||(52632467-52632504)
chr4 (37-73)||(37801406-37801442)
chr4 (37-72)||(34240944-34240979)
chr4 (37-71)||(25954702-25954736)
chr4 (39-73)||(35018886-35018920)
chr4 (37-68)||(1535726-1535757)
chr4 (37-72)||(16338386-16338421)
chr4 (37-71)||(31377341-31377375)
chr4 (37-71)||(49284309-49284343)
[»] chr8 (3 HSPs)
chr8 (37-71)||(22324548-22324582)
chr8 (37-68)||(42072383-42072414)
chr8 (37-73)||(42013822-42013858)
[»] chr5 (5 HSPs)
chr5 (37-71)||(23218437-23218471)
chr5 (37-77)||(16618713-16618753)
chr5 (37-71)||(10081096-10081130)
chr5 (37-71)||(37169175-37169209)
chr5 (37-73)||(38397548-38397584)
[»] chr2 (7 HSPs)
chr2 (37-71)||(14942186-14942220)
chr2 (39-71)||(19181500-19181532)
chr2 (37-68)||(40277430-40277461)
chr2 (37-68)||(42769900-42769931)
chr2 (37-71)||(3956523-3956557)
chr2 (37-71)||(14186580-14186614)
chr2 (40-68)||(29846396-29846424)
[»] chr7 (6 HSPs)
chr7 (37-70)||(32876672-32876705)
chr7 (37-71)||(24320580-24320614)
chr7 (41-71)||(29556085-29556115)
chr7 (37-71)||(34707068-34707102)
chr7 (37-70)||(19334703-19334736)
chr7 (43-71)||(34259484-34259512)
[»] scaffold0079 (1 HSPs)
scaffold0079 (37-72)||(54439-54474)


Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 72 - 536
Target Start/End: Original strand, 3613663 - 3614127
Alignment:
Q  72 tttgaagataaatgaatacagtatgcaacaacttgctgcgctgaatcttgttccatgcgcccgctcaaaattggcagcatggacaagagcctatgtggta 171  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3613663 tttgaagataaatgaatacagtatgcaacaacttgctgtgctgaatcttgttccatgcgcccgctcaaaattggcagcatggacaagagcctatggggta 3613762  T
Q  172 ggttctggtattatgcctcatccaacttcaagaaccttgaaagaatattactggacggattcgtttgcaaatcaagagaatgttagggcttgtttagctt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3613763 ggttctggtattatgcctcatccaacttcaagaaccttgaaagagtattgttggacggattcttttgcaaatcaagagaatgttagggcttgtttagctt 3613862  T
Q  272 ggaagaaagagacatgttctggaaaactgatgaacgtgatttgcttgaatgttatcggtctgtttgggctacttcacctcaataaggatcgcacattctg 371  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3613863 gggagaaagagacatgttctggaaaaccgatgaacgtgatttgcttgaatgttatcggtctgtttgggctacttcacctcaataaggatcgcacattctg 3613962  T
Q  372 ttataatgatctgaatatgaaccgtatttgtacttcatggcttaataccttggattctattacaacaaagagaatgcataatgagattcttaatcaaaaa 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3613963 ttataatgatctgaatatgaaccgtatttgtacttcatggcttaataccttggattctattacaacaaagagaatgcataatgagattcttaatcaaaaa 3614062  T
Q  472 gaagcactttgtaggattgttgcacatccatttggattagcacaaacatactggcttgcacaggt 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3614063 gaagcactttgtaggattgttgcacatccatttggattagcacaaacatactggcttgcacaggt 3614127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 23908271 - 23908237
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    |||||||||||||||||||||||||||||||||||    
T  23908271 gcccgggctttacaatattcctggctccgccactg 23908237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 3346772 - 3346740
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccac 69  Q
    |||||||||||||||||||||||||||||||||    
T  3346772 gcccgggctttacaatattcctggctccgccac 3346740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 7742928 - 7742963
Alignment:
Q  44 ctttacaatattcctggctccgccactgtttgaaga 79  Q
    |||||||||||||||||||||||||||| |||||||    
T  7742928 ctttacaatattcctggctccgccactgcttgaaga 7742963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 29149690 - 29149725
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactgt 72  Q
    |||||| |||||||||||||||||||||||||||||    
T  29149690 gcccggactttacaatattcctggctccgccactgt 29149725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 71
Target Start/End: Original strand, 42517443 - 42517474
Alignment:
Q  40 cgggctttacaatattcctggctccgccactg 71  Q
    ||||||||||||||||||||||||||||||||    
T  42517443 cgggctttacaatattcctggctccgccactg 42517474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 48392546 - 48392580
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    |||||| ||||||||||||||||||||||||||||    
T  48392546 gcccggactttacaatattcctggctccgccactg 48392580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 71 - 536
Target Start/End: Original strand, 14757485 - 14757950
Alignment:
Q  71 gtttgaagataaatgaatacagtatgcaacaacttgctgcgctgaatcttgttccatgcgcccgctcaaaattggcagcatggacaagagcctatgtggt 170  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||    
T  14757485 gtttgaagataaatgaatacagtatgcaacaacttgctgcgttgaatcttgttccatgcgccggctcaaaattggcagcatggacaagagcttatggggt 14757584  T
Q  171 aggttctggtattatgcctcatccaacttcaagaaccttgaaagaatattactggacggattcgtttgcaaatcaagagaatgttagggcttgtttagct 270  Q
    ||||| |||||||||||||||||||||||||||||   ||||||| |||| |||||| ||||| ||||| || |||||||||||||||||||||||||||    
T  14757585 aggttgtggtattatgcctcatccaacttcaagaatgatgaaagagtattgctggactgattcttttgcgaagcaagagaatgttagggcttgtttagct 14757684  T
Q  271 tggaagaaagagacatgttctggaaaactgatgaacgtgatttgcttgaatgttatcggtctgtttgggctacttcacctcaataaggatcgcacattct 370  Q
    ||| |||| ||||  ||||| ||||| | || |||| |||||||||||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||    
T  14757685 tgggagaaggagatgtgttccggaaagccgacgaacatgatttgcttgaatattattggtctgtttgggctatttcacctcaataaggatcacacattct 14757784  T
Q  371 gttataatgatctgaatatgaaccgtatttgtacttcatggcttaataccttggattctattacaacaaagagaatgcataatgagattcttaatcaaaa 470  Q
    || |||| |||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || ||    
T  14757785 gtaataacgatccgattatgaatcgtatttgtacttcatggcttaataccttggattctattacaacaaagacaatgcagaatgagattcttaaacagaa 14757884  T
Q  471 agaagcactttgtaggattgttgcacatccatttggattagcacaaacatactggcttgcacaggt 536  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  14757885 agaagcactttgtagaattgctgcacatccatttggactagcacaaacatactggcttgcacaggt 14757950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 5391444 - 5391410
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    |||||||||||||||||||||||||||||||||||    
T  5391444 gcccgggctttacaatattcctggctccgccactg 5391410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 40846059 - 40846090
Alignment:
Q  37 gcccgggctttacaatattcctggctccgcca 68  Q
    ||||||||||||||||||||||||||||||||    
T  40846059 gcccgggctttacaatattcctggctccgcca 40846090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 71
Target Start/End: Complemental strand, 21853178 - 21853148
Alignment:
Q  41 gggctttacaatattcctggctccgccactg 71  Q
    |||||||||||||||||||||||||||||||    
T  21853178 gggctttacaatattcctggctccgccactg 21853148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 23467637 - 23467671
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    |||| ||||||||||||||||||||||||||||||    
T  23467637 gcccaggctttacaatattcctggctccgccactg 23467671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 44995111 - 44995145
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    ||||||||||||| |||||||||||||||||||||    
T  44995111 gcccgggctttactatattcctggctccgccactg 44995145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 70
Target Start/End: Complemental strand, 13856081 - 13856052
Alignment:
Q  41 gggctttacaatattcctggctccgccact 70  Q
    ||||||||||||||||||||||||||||||    
T  13856081 gggctttacaatattcctggctccgccact 13856052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 24694793 - 24694830
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactgttt 74  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24694793 gcccgggctttacaatattcctggctccgccactgttt 24694830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 9231996 - 9232030
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    |||||||||||||||||||||||||||||||||||    
T  9231996 gcccgggctttacaatattcctggctccgccactg 9232030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 1728039 - 1728073
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    |||||||||||||||||||| ||||||||||||||    
T  1728039 gcccgggctttacaatattcttggctccgccactg 1728073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 11084596 - 11084562
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    |||||| ||||||||||||||||||||||||||||    
T  11084596 gcccggactttacaatattcctggctccgccactg 11084562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 13627527 - 13627494
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccact 70  Q
    |||||||||||| |||||||||||||||||||||    
T  13627527 gcccgggctttagaatattcctggctccgccact 13627494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 52632504 - 52632467
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactgttt 74  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52632504 gcccgggctttacaatattcctggctccgccactgttt 52632467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 37801406 - 37801442
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactgtt 73  Q
    |||||||||||||||||||||||||||||||||||||    
T  37801406 gcccgggctttacaatattcctggctccgccactgtt 37801442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 34240979 - 34240944
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactgt 72  Q
    ||||||||||||||||||||||||||||||||||||    
T  34240979 gcccgggctttacaatattcctggctccgccactgt 34240944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 25954736 - 25954702
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    |||||||||||||||||||||||||||||||||||    
T  25954736 gcccgggctttacaatattcctggctccgccactg 25954702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 35018920 - 35018886
Alignment:
Q  39 ccgggctttacaatattcctggctccgccactgtt 73  Q
    |||||||||||||||||||||||||||||||||||    
T  35018920 ccgggctttacaatattcctggctccgccactgtt 35018886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 1535757 - 1535726
Alignment:
Q  37 gcccgggctttacaatattcctggctccgcca 68  Q
    ||||||||||||||||||||||||||||||||    
T  1535757 gcccgggctttacaatattcctggctccgcca 1535726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 16338386 - 16338421
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactgt 72  Q
    ||||||||||||||||||| ||||||||||||||||    
T  16338386 gcccgggctttacaatatttctggctccgccactgt 16338421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 31377375 - 31377341
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    ||||||||||||||||| |||||||||||||||||    
T  31377375 gcccgggctttacaataatcctggctccgccactg 31377341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 49284343 - 49284309
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    ||||||| |||||||||||||||||||||||||||    
T  49284343 gcccgggttttacaatattcctggctccgccactg 49284309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 22324582 - 22324548
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    |||||||||||||||||||||||||||||||||||    
T  22324582 gcccgggctttacaatattcctggctccgccactg 22324548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 42072414 - 42072383
Alignment:
Q  37 gcccgggctttacaatattcctggctccgcca 68  Q
    ||||||||||||||||||||||||||||||||    
T  42072414 gcccgggctttacaatattcctggctccgcca 42072383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 42013858 - 42013822
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactgtt 73  Q
    ||||||||||||||||||| | |||||||||||||||    
T  42013858 gcccgggctttacaatatttcaggctccgccactgtt 42013822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 23218471 - 23218437
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    |||||||||||||||||||||||||||||||||||    
T  23218471 gcccgggctttacaatattcctggctccgccactg 23218437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 16618713 - 16618753
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactgtttgaa 77  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  16618713 gcccgggctttacaatatttctgactccgccactgtttgaa 16618753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 10081130 - 10081096
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    ||||||||||||||||| |||||||||||||||||    
T  10081130 gcccgggctttacaataatcctggctccgccactg 10081096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 37169175 - 37169209
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    ||||||||||||||||||||||||||| |||||||    
T  37169175 gcccgggctttacaatattcctggctctgccactg 37169209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 38397584 - 38397548
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactgtt 73  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  38397584 gcccaggctttataatattcctggctccgccactgtt 38397548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 14942186 - 14942220
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    |||||||||||||||||||||||||||||||||||    
T  14942186 gcccgggctttacaatattcctggctccgccactg 14942220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 19181532 - 19181500
Alignment:
Q  39 ccgggctttacaatattcctggctccgccactg 71  Q
    |||||||||||||||||||||||||||||||||    
T  19181532 ccgggctttacaatattcctggctccgccactg 19181500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 40277430 - 40277461
Alignment:
Q  37 gcccgggctttacaatattcctggctccgcca 68  Q
    ||||||||||||||||||||||||||||||||    
T  40277430 gcccgggctttacaatattcctggctccgcca 40277461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 42769900 - 42769931
Alignment:
Q  37 gcccgggctttacaatattcctggctccgcca 68  Q
    ||||||||||||||||||||||||||||||||    
T  42769900 gcccgggctttacaatattcctggctccgcca 42769931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 3956557 - 3956523
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    ||||||||||||||||| |||||||||||||||||    
T  3956557 gcccgggctttacaataatcctggctccgccactg 3956523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 14186580 - 14186614
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    ||||| |||||||||||||||||||||||||||||    
T  14186580 gcccgagctttacaatattcctggctccgccactg 14186614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 29846424 - 29846396
Alignment:
Q  40 cgggctttacaatattcctggctccgcca 68  Q
    |||||||||||||||||||||||||||||    
T  29846424 cgggctttacaatattcctggctccgcca 29846396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 32876672 - 32876705
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccact 70  Q
    ||||||||||||||||||||||||||||||||||    
T  32876672 gcccgggctttacaatattcctggctccgccact 32876705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 24320580 - 24320614
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    ||||||||||||||||||||||| |||||||||||    
T  24320580 gcccgggctttacaatattcctgactccgccactg 24320614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 29556085 - 29556115
Alignment:
Q  41 gggctttacaatattcctggctccgccactg 71  Q
    |||||||||||||||||||||||||||||||    
T  29556085 gggctttacaatattcctggctccgccactg 29556115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 34707102 - 34707068
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactg 71  Q
    |||||||||||| ||||||||||||||||||||||    
T  34707102 gcccgggctttagaatattcctggctccgccactg 34707068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 19334703 - 19334736
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccact 70  Q
    ||||||||||||||||| ||||||||||||||||    
T  19334703 gcccgggctttacaatagtcctggctccgccact 19334736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 34259512 - 34259484
Alignment:
Q  43 gctttacaatattcctggctccgccactg 71  Q
    |||||||||||||||||||||||||||||    
T  34259512 gctttacaatattcctggctccgccactg 34259484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 54474 - 54439
Alignment:
Q  37 gcccgggctttacaatattcctggctccgccactgt 72  Q
    ||||||||||||||||||| ||||||||||||||||    
T  54474 gcccgggctttacaatatttctggctccgccactgt 54439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University