View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_high_4 (Length: 528)
Name: NF8890_high_4
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 14 - 512
Target Start/End: Original strand, 36324143 - 36324632
Alignment:
| Q |
14 |
agggaaccacaagcaggcagtacttggcgggaaacaacaccagataccgtagtcattttcaaattcaagcaacatcaaccaattgattagttttgaggaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36324143 |
agggaaccacaagcaggcagtacttggcgggaaacaacaccagataccgtagtcattttcaaattcaagcaacatcaaccaattgattagttttgaggaa |
36324242 |
T |
|
| Q |
114 |
attcaaaaaatctggcttgaaattcttctctctttcccttcttgcatgcaccaatcagaaaaatccgacactgaacgtgaagaagggaaagaaaggccaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36324243 |
attcaaaaaatctggcttgaaattcttctctctttcccttcttgcatggatcaatcagaaaaatccgacactgaacgtgaagaagggaaagaaaggccaa |
36324342 |
T |
|
| Q |
214 |
aacatcaaataggcaggcttcaaattgaattaccaccctccagatagcaaaatctgaatgtaatggggaaatgcagcactagaatttgatcctctaaaga |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36324343 |
aacatcaaataggcaggcttcaaattgaattaccaccctccagatagcaaaatctgaatgtaatgtggaaatgcagcactagaatttgatcctctaaaga |
36324442 |
T |
|
| Q |
314 |
ataataataaaaatgcagtttacaatgaggttaatattgacatatatattaatgttaaaatttaaggaaaaaatgtaccaatgtattatgcatgaagagg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36324443 |
ataataataaaaatgcagtttacaatgaggttaatattgacatatatgctaatgttaaaatttaaggaaaaaatgtaccaatgtattatgcatgaagagg |
36324542 |
T |
|
| Q |
414 |
gtgggaattaaggagtcccttaaaacaaggaaaaatgtttgtgacaaaaagaagaataaaaagttgatacaatgtgatgatatatgaacttgaattcat |
512 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36324543 |
gtgggaattaatgagtcccttaaaacaaggaaaaatgtttgtgac---------aataaaaagttgatacaatgtgatgatatatgaacttgaattcat |
36324632 |
T |
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