View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8890_low_1 (Length: 1213)
Name: NF8890_low_1
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_1 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
| [»] scaffold1720 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 648; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 15 - 745
Target Start/End: Complemental strand, 17020453 - 17019723
Alignment:
| Q |
15 |
tggacatcactaaagatgcaagatacttcgaagatactaccccagagcctcagttcgacgagaagttaagggcaacctatcttacagttgaagaagaact |
114 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17020453 |
tggacatcgctaaagatgcaagatacgtcgaagatactaccccagagcctcagttcgacgagaagttaagggcaacctatcttacagttgaagaagaact |
17020354 |
T |
|
| Q |
115 |
gattgatttcctcaaccgatgcaagctgaagaattctaaggtaatgcttttccttagatgtagtgttgtatttgacaaagag-caaccaaaggccttgaa |
213 |
Q |
| |
|
|| ||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17020353 |
gactgacttcctcaaccgatgcaggctgaagaattctgaggtaatgcttttccttagatgtagtgttgtatttgacaaagaggcaaccaaaggccttgaa |
17020254 |
T |
|
| Q |
214 |
agttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17020253 |
agttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactctt |
17020154 |
T |
|
| Q |
314 |
cgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataagaatgtgcaaca |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17020153 |
cgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacctgatacaaagtgggttcagtcgacccataagaatgtgcaaca |
17020054 |
T |
|
| Q |
414 |
tgggaaaaacaatgtggtgaaatgaaacaccagaattgttgataacaaaaatggtgatgcctttgcgtcaaagaagtttgcttacaacaacaattacaag |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17020053 |
tgggaaaaacaatgtggtgaaatgaaacaccataattgttgataacaaaaatggtgatgcctttgcgtcaaagaagtttgcttacaacagcaattacaag |
17019954 |
T |
|
| Q |
514 |
gggaagacccccatgacaaggactccatggagaaggtaccagaggttcaaaaaggcattgctgcaagccgttaagaccagactcttgacataggaccgaa |
613 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17019953 |
gggaagacccccatgacaaggactcaatggagaaggtaccagaggttcaaaaaggcattgcttcaagccgttaagaccagactcttgacataggaccgaa |
17019854 |
T |
|
| Q |
614 |
tgtggaaaatctaagttccctaaccttagggaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagca |
713 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | ||||||| |||||||||||||||||| |
|
|
| T |
17019853 |
tgtggaaaatctaagttccctaaccttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttgtttagccggagca |
17019754 |
T |
|
| Q |
714 |
tgagattaagaaggccttaagtggctggcagt |
745 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |
|
|
| T |
17019753 |
tgagattaagaaggcctt-agtggctggcagt |
17019723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 58 - 559
Target Start/End: Original strand, 18217416 - 18217921
Alignment:
| Q |
58 |
agagcctcagttcgacgagaagttaagggcaacctatcttacagttgaagaagaactgattgatttcctcaaccgatgcaagctgaagaattctaaggta |
157 |
Q |
| |
|
||||||||||||||| | ||||||| | ||||||||| ||||||| || ||||| |||||||||| ||||| ||||||||||||||||||| | ||||| |
|
|
| T |
18217416 |
agagcctcagttcgatgtaaagttaaagacaacctatcctacagttaaaaaagaattgattgattttctcaatcgatgcaagctgaagaattatgaggta |
18217515 |
T |
|
| Q |
158 |
atgcttttccttagatgtagtgttgtatttgacaaagag-caaccaaaggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatg |
256 |
Q |
| |
|
||||| |||| ||||||||||| ||| |||||||||||| |||| ||||||| || ||||||||||||||||||||||||| |||||||||| | || |
|
|
| T |
18217516 |
atgctcttccctagatgtagtgctgtttttgacaaagaggcaactgaaggcctcaaaggttctatcccaaaacctaagaaaagggggaaatggtctgctg |
18217615 |
T |
|
| Q |
257 |
atcataaacctaagttttcctttactaagagttatattcctttcatcaataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttt |
356 |
Q |
| |
|
|||||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| |||||| |||| |
|
|
| T |
18217616 |
atcatagacctaagtgttcttttacaaagagttatattcctttcatcaataactcttcgaccaccaattatgtcaatcaaagtggtcagggaaaaacttt |
18217715 |
T |
|
| Q |
357 |
tgttccttgtgcacgtgatacaaagtgggttcagtcgacccataagaatgtgcaacatgggaaaaacaatgtggtgaaatgaaacaccagaattgttgat |
456 |
Q |
| |
|
|| ||| ||||| | ||| ||||||||||||||||| |||||||||||||||||||| |||||| |||||||| ||||||| || |||| ||| |
|
|
| T |
18217716 |
ggtcacttatgcaccaaaccaaaaatgggttcagtcgacccacaagaatgtgcaacatgggaagaacaatatggtgaaaggaaacacaagtgttgtggat |
18217815 |
T |
|
| Q |
457 |
---aacaaaaatggtgatgcctttgcgtcaaagaagtttgcttacaacaacaattacaaggggaagacccccatgacaaggactccatggagaaggtacc |
553 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||||| |||||| | | || |||||||| || | || |||||||| |||| |||||| ||||||| |
|
|
| T |
18217816 |
aacaacaaaaatggtactgcctttgagtcgaagaagtatgcttatagaagaaactacaagggaaataatcctatgacaagaactcaatggaggaggtacc |
18217915 |
T |
|
| Q |
554 |
agaggt |
559 |
Q |
| |
|
|||||| |
|
|
| T |
18217916 |
agaggt |
18217921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 98 - 461
Target Start/End: Original strand, 21311965 - 21312329
Alignment:
| Q |
98 |
acagttgaagaagaactgattgatttcctcaaccgatgcaagctgaagaattctaaggtaatgcttttccttagatgtagtgttgtatttgacaaagagc |
197 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| | || | |||||||| ||| ||||| |||||| |
|
|
| T |
21311965 |
acagttgaaaaagaattgattgatttcctcaatcgatgcaagctgaagaattctaaggtaatgctctgccccatatgtagtgatgtgtttgaaaaagagg |
21312064 |
T |
|
| Q |
198 |
-aaccaaaggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcc |
296 |
Q |
| |
|
||| |||||||| ||| ||||||||||||| |||||||||| ||||||||||| | |||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
21312065 |
taactaaaggcctcgaaggttctatcccaaatcctaagaaaatagggaaatggtatggtgatcatagacctaagttttcctttacaaagagttatattcc |
21312164 |
T |
|
| Q |
297 |
tttcatcaataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacc |
396 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| || |||| ||||| | ||| ||||||||||||||| |
|
|
| T |
21312165 |
tttcatcaataactcttcgaccaccaattatgtcaatcaaagtggtcaaggaaaagctttagtcccttatgcacccaaccaaaaatgggttcagtcgacc |
21312264 |
T |
|
| Q |
397 |
cataagaatgtgcaacatgggaaaaacaatgtggtgaaatgaaacaccagaattgttgataacaa |
461 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| ||||||| || |||| |||||||| |
|
|
| T |
21312265 |
cataagaatgtgcagcatgggaagaacaatgtggtgaaaagaaacacaagtgttgtggataacaa |
21312329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 255 - 362
Target Start/End: Original strand, 21307442 - 21307549
Alignment:
| Q |
255 |
tgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagct |
354 |
Q |
| |
|
|||||||||||| ||||| || || |||||||||||||| |||||||||||||||||||||| || |||| || || |||| ||||||||| |||||| |
|
|
| T |
21307442 |
tgatcataaaccaaagttctctttcactaagagttatatctctttcatcaataactcttcgaccactaattatgttaacaaaaatggtcaagggaaagct |
21307541 |
T |
|
| Q |
355 |
tttgttcc |
362 |
Q |
| |
|
| |||||| |
|
|
| T |
21307542 |
tatgttcc |
21307549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 20863608 - 20863514
Alignment:
| Q |
223 |
ccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactcttcgac |
317 |
Q |
| |
|
|||||| | ||||||||||| ||||||| | | ||| || ||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20863608 |
ccaaaatccaagaaaagaggaaaatggtctgttaatcttagaccaaagttctcttttactaagagttatattcctttcatcaataactcttcgac |
20863514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 232 - 362
Target Start/End: Original strand, 22616190 - 22616320
Alignment:
| Q |
232 |
aagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactcttcgactaccaatttcgtca |
331 |
Q |
| |
|
||||||||||| ||||||| | |||||||| ||| || || || |||||||||||||||||| |||||||||||||| |||||| || |||| || | |
|
|
| T |
22616190 |
aagaaaagaggaaaatggtatgctgatcatagacccaaattctcttttactaagagttatatttttttcatcaataactattcgaccactaattatgtta |
22616289 |
T |
|
| Q |
332 |
ataaaagtggtcaaggaaaagcttttgttcc |
362 |
Q |
| |
|
|||| | ||||||||| ||| |||||||||| |
|
|
| T |
22616290 |
ataagaatggtcaagggaaaacttttgttcc |
22616320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 629 - 741
Target Start/End: Complemental strand, 4598423 - 4598311
Alignment:
| Q |
629 |
ttccctaaccttagggaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttgt-ttagccggagcatgagattaagaagg |
727 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||| ||| || |||||||| ||||| |||||| ||||| |||| |||||| || |||| |
|
|
| T |
4598423 |
ttccctaaccttagggaatgataaggatgatcgtcacatctaagcaaggtgcttagaattgaatcacggttgtgttagctggagtgtgagatcaaaaagg |
4598324 |
T |
|
| Q |
728 |
ccttaagtggctgg |
741 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
4598323 |
cctt-agtggctgg |
4598311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 471 - 552
Target Start/End: Original strand, 21306594 - 21306675
Alignment:
| Q |
471 |
tgcctttgcgtcaaagaagtttgcttacaacaacaattacaaggggaagacccccatgacaaggactccatggagaaggtac |
552 |
Q |
| |
|
|||||||| ||| | |||||||||||| | ||||| |||||||| |||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
21306594 |
tgcctttgagtcgaggaagtttgcttatagaaacaactacaagggaaagaatcccatgacaagaactcaatggagaaggtac |
21306675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 382 - 434
Target Start/End: Original strand, 22616346 - 22616398
Alignment:
| Q |
382 |
tgggttcagtcgacccataagaatgtgcaacatgggaaaaacaatgtggtgaa |
434 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||||| |||||||||||||| |
|
|
| T |
22616346 |
tgggttcattcgacccataagaatgttcagtatgggaagaacaatgtggtgaa |
22616398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 560; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 613 - 1196
Target Start/End: Complemental strand, 20195880 - 20195297
Alignment:
| Q |
613 |
atgtggaaaatctaagttccctaaccttagggaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagc |
712 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20195880 |
atgtggaaaatctaagttccctagctttagagaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagc |
20195781 |
T |
|
| Q |
713 |
atgagattaagaaggccttaagtggctggcagtaaacgaaagatgtaaagaaaaagatcattgaagagggacaaaacgtggtccctgttgaaaccctcac |
812 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20195780 |
attagattaagaaggccttaagtggccggcagtaaacgaaagatgtaaagaaaaagatcattgaagagggacaaaacgtggtccctgttgaaaccctcac |
20195681 |
T |
|
| Q |
813 |
tggccgacaccctcagcatgatcataaaatatgtggcttcatatgattctacaaagtaggggttactcaacacaaattgaatctttggcaagtttggatg |
912 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20195680 |
tggccgacaccctcagcatgatcataaaatatgtggcttcatatgattctacaaagtaggggttactcaacacaaattgaatctttggcaagtttggatg |
20195581 |
T |
|
| Q |
913 |
gggctgatgaagcatttgggctgctctaacaacgcagaaaagcgcatggccactgaggatgagttgttgcatgaacctccactgtcccacgttgggtgaa |
1012 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20195580 |
gggctgatgaagcatttgggctgctctaacaacgcagaaaagcgcatggccactgaggatgagttgttgcatgaacctccactgtcccacgttgggtgaa |
20195481 |
T |
|
| Q |
1013 |
gggatggtgagaaggtgtaaaaaatcgtcaaaaacatccctgagcacctcaatgtcctcagatatttggcggtgaagtattgcagatgccctaaaagaaa |
1112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20195480 |
gggatggtgagaaggtgtaaaaaatcgtcaaaaacatccctgagcacctcaatgtcctcagatatttggcggtgaagtattgcagatgccctaaaagaaa |
20195381 |
T |
|
| Q |
1113 |
acaacctactaatgcttaaagcagcaaactttttggtaataaagagtcgaagcagcaatctttttgggaatagtaccagggaag |
1196 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20195380 |
acaacctactaatgcgtaaagcagcaaactttttggtaataaagagtcgaagcagcaatctttttgggaatagtaccagggaag |
20195297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 613 - 1196
Target Start/End: Complemental strand, 22089903 - 22089320
Alignment:
| Q |
613 |
atgtggaaaatctaagttccctaaccttagggaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagc |
712 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22089903 |
atgtggaaaatctaagttccctagctttagagaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagc |
22089804 |
T |
|
| Q |
713 |
atgagattaagaaggccttaagtggctggcagtaaacgaaagatgtaaagaaaaagatcattgaagagggacaaaacgtggtccctgttgaaaccctcac |
812 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22089803 |
attagattaagaaggccttaagtggccggcagtaaacgaaagatgtaaagaaaaagatcattgaagagggacaaaacgtggtccctgttgaaaccctcac |
22089704 |
T |
|
| Q |
813 |
tggccgacaccctcagcatgatcataaaatatgtggcttcatatgattctacaaagtaggggttactcaacacaaattgaatctttggcaagtttggatg |
912 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22089703 |
tggccgacaccctcagcatgatcataaaatatgtggcttcatatgattctacaaagtaggggttactcaacacaaattgaatctttggcaagtttggatg |
22089604 |
T |
|
| Q |
913 |
gggctgatgaagcatttgggctgctctaacaacgcagaaaagcgcatggccactgaggatgagttgttgcatgaacctccactgtcccacgttgggtgaa |
1012 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22089603 |
gggctgatgaagcatttgggctgctctaacaacgcagaaaagcgcatggccactgaggatgagttgttgcatgaacctccactgtcccacgttgggtgaa |
22089504 |
T |
|
| Q |
1013 |
gggatggtgagaaggtgtaaaaaatcgtcaaaaacatccctgagcacctcaatgtcctcagatatttggcggtgaagtattgcagatgccctaaaagaaa |
1112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22089503 |
gggatggtgagaaggtgtaaaaaatcgtcaaaaacatccctgagcacctcaatgtcctcagatatttggcggtgaagtattgcagatgccctaaaagaaa |
22089404 |
T |
|
| Q |
1113 |
acaacctactaatgcttaaagcagcaaactttttggtaataaagagtcgaagcagcaatctttttgggaatagtaccagggaag |
1196 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22089403 |
acaacctactaatgcgtaaagcagcaaactttttggtaataaagagtcgaagcagcaatctttttgggaatagtaccagggaag |
22089320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 639 - 729
Target Start/End: Complemental strand, 20246200 - 20246110
Alignment:
| Q |
639 |
ttagggaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagcatgagattaagaaggcc |
729 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| ||| ||||||||| ||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
20246200 |
ttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggtatatgagattaagaaggcc |
20246110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 639 - 729
Target Start/End: Complemental strand, 22140184 - 22140094
Alignment:
| Q |
639 |
ttagggaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagcatgagattaagaaggcc |
729 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| ||| ||||||||| ||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
22140184 |
ttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggtatatgagattaagaaggcc |
22140094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 612 - 732
Target Start/End: Complemental strand, 25948199 - 25948079
Alignment:
| Q |
612 |
aatgtggaaaatctaagttccctaaccttagggaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggag |
711 |
Q |
| |
|
||||||||| |||| | ||||||| ||||||||||||||| |||| |||||||||| ||| || ||||||||| | ||| | ||||||||||||| | |
|
|
| T |
25948199 |
aatgtggaagatctgaattccctagtcttagggaatgatgaagatggtcatcacatctaagcaagatgcttagaacagaataacggttgtttagccgtat |
25948100 |
T |
|
| Q |
712 |
catgagattaagaaggcctta |
732 |
Q |
| |
|
| |||||| |||||||||||| |
|
|
| T |
25948099 |
cttgagataaagaaggcctta |
25948079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 294; Significance: 1e-164; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 294; E-Value: 1e-164
Query Start/End: Original strand, 15 - 582
Target Start/End: Complemental strand, 35694 - 35130
Alignment:
| Q |
15 |
tggacatcactaaagatgcaagatacttcgaagatactaccccagagcctcagttcgacgagaagttaagggcaacctatcttacagttgaagaagaact |
114 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
35694 |
tggacatcactaaagatgcaggatatgtcgaagagactaccctagagcctcagtttgacgagaagttaaaggcaacctatcctacagctgaagaagaact |
35595 |
T |
|
| Q |
115 |
gattgatttcctcaaccgatgcaagctgaagaattctaaggtaatgcttttccttagatgtagtgttgtatttgacaaagag-caaccaaaggccttgaa |
213 |
Q |
| |
|
| |||| |||||||| ||||||| |||| |||||| | |||||||||||| ||| ||||||||||||||||||||||||||| |||| |||| |||||| |
|
|
| T |
35594 |
ggttgacttcctcaatcgatgcaggctggagaattatgaggtaatgctttgcctcagatgtagtgttgtatttgacaaagaggcaactgaaggtcttgaa |
35495 |
T |
|
| Q |
214 |
agttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactctt |
313 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
35494 |
agttccatcccaaaacctaagaaaagaaggaaatggtctggtgatcatagacctaagttttcctttattaagagctatattcctttcatcaataactctt |
35395 |
T |
|
| Q |
314 |
cgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataagaatgtgcaaca |
413 |
Q |
| |
|
|||| ||||||| |||| ||||||| ||| ||| ||||||||||||||||| ||||| || | ||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
35394 |
cgaccaccaattacgtctataaaaggggtaaagaaaaagcttttgttccttatgcacctggtcaaaaatgggttcagtcgactcataagaatgtgcaaca |
35295 |
T |
|
| Q |
414 |
tgggaaaaacaatgtggtgaaatgaaacaccagaattgttgataacaaaaatggtgatgcctttgcgtcaaagaagtttgcttacaacaacaattacaag |
513 |
Q |
| |
|
||||||||| |||||||||||| || |||||| | |||| || ||||||| |||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
35294 |
tgggaaaaataatgtggtgaaagaaagcaccagtactgtttat-----aaatggtattgcctttgagtcaaagaagtatgcttacaacaacaattacaag |
35200 |
T |
|
| Q |
514 |
gggaagacccccatgacaaggactccatggagaaggtaccagaggttc-aaaaaggcattgctgcaagcc |
582 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||||| ||| || | ||||||||||||||||||||| |
|
|
| T |
35199 |
gggaagaaccccatgacaagaactcaatggagaaggtagtagatgtccaaaaaaggcattgctgcaagcc |
35130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 240; Significance: 1e-132; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 15 - 582
Target Start/End: Complemental strand, 22804545 - 22803977
Alignment:
| Q |
15 |
tggacatcactaaagatgcaagatacttcgaagatactaccccagag-cctcagttcgacgagaagttaagggcaacctatcttacagttgaagaagaac |
113 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| | ||||| ||| || ||| ||||||||| | |||||| | || |||||| ||||| |||||||||| |
|
|
| T |
22804545 |
tggacatcactaaagatgcagaatacgtcgaaaagactactccataggccttagttcgacgcggagttaaagacagcctatcctacagctgaagaagaat |
22804446 |
T |
|
| Q |
114 |
tgattgatttcctcaaccgatgcaagctgaagaattctaaggtaatgcttttccttagatgtagtgttgtatttgacaaagag-caaccaaaggccttga |
212 |
Q |
| |
|
||||||| |||||||| ||||| | ||||||||||| | |||||||| ||| |||| ||||||||| |||||||||||||||| |||| |||||| |||| |
|
|
| T |
22804445 |
tgattgacttcctcaatcgatgtaggctgaagaattatgaggtaatgttttgccttcgatgtagtgctgtatttgacaaagaggcaactaaaggcgttga |
22804346 |
T |
|
| Q |
213 |
aagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactct |
312 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||| || ||||| ||||||||| |
|
|
| T |
22804345 |
aagttctatcccaaaccctaagaaaagagggaaatggtatggtgatcatagacctaagttttcctttacaaagagtt-----ccattcattaataactct |
22804251 |
T |
|
| Q |
313 |
tcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataagaatgtgcaac |
412 |
Q |
| |
|
|| || ||||||| |||||| ||| ||||| ||||||||||||| ||||||| ||||| | | || ||||||||||||||||||||||||||||||| |
|
|
| T |
22804250 |
tctaccaccaattacgtcaacaaaggtggtaaaggaaaagctttggttccttatgcacctaaccagaaatgggttcagtcgacccataagaatgtgcaac |
22804151 |
T |
|
| Q |
413 |
atgggaaaaacaatgtggtgaaatgaaacaccag---aattgttgataacaaaaatggtgatgcctttgcgtcaaagaagtttgcttacaacaacaatta |
509 |
Q |
| |
|
||||||| ||||||||||||||| ||| || || |||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||||| || |
|
|
| T |
22804150 |
atgggaagaacaatgtggtgaaaagaagcaatagtactattgttgacaacaaaaatggtactgcctttgagtcaaagaagtatgcttacaacaacaacta |
22804051 |
T |
|
| Q |
510 |
caaggggaagacccccatgacaaggactccatggagaaggtaccagaggttc-aaaaaggcattgctgcaagcc |
582 |
Q |
| |
|
||| || |||| ||||||||||||||||| |||||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
22804050 |
caaaggaaagaaccccatgacaaggactcaatggagaaggtaccagaggtccaaaaaaggcgttgctgcaagcc |
22803977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 797 - 1118
Target Start/End: Complemental strand, 17988887 - 17988566
Alignment:
| Q |
797 |
ctgttgaaaccctcactggccgacaccctcagcatgatcataaaatatgtggcttcatatgattctacaaagtaggggttactcaacacaaattgaatct |
896 |
Q |
| |
|
|||| ||||||||| || ||| |||||||||||||||||| ||||||||||||||||| |||||| ||||||| || |||||||||||| ||||| |
|
|
| T |
17988887 |
ctgtcgaaaccctcgctagccaacaccctcagcatgatcaaaaaatatgtggcttcatccgattctgataagtaggctttgctcaacacaaatcgaatcc |
17988788 |
T |
|
| Q |
897 |
ttggcaagtttggatggggctgatgaagcatttgggctgctctaacaacgcagaaaagcgcatggccactgaggatgagttgttgcatgaacctccactg |
996 |
Q |
| |
|
||||||| | ||||| || |||| | |||||||||||||||||||| |||||||| || || ||||| ||| | |||||||||||||| || ||| |
|
|
| T |
17988787 |
ttggcaaactaggatgaggtcgatggaacatttgggctgctctaacaatgcagaaaaacgtgtgaccactaagggtaagttgttgcatgaattccctctg |
17988688 |
T |
|
| Q |
997 |
tcccacgttgggtgaagggatggtgagaaggtgtaaaaaatcgtcaaaaacatccctgagcacctcaatgtcctcagatatttggcggtgaagtattgca |
1096 |
Q |
| |
|
||||||||||||| |||||||| ||||||| || ||| |||| || | ||| ||||||||||||||| ||||||||||| |||||| || ||| || | |
|
|
| T |
17988687 |
tcccacgttgggtaaagggatgatgagaagatgcaaacaatcagcagacacaaccctgagcacctcaacgtcctcagataattggcgatggagttttact |
17988588 |
T |
|
| Q |
1097 |
gatgccctaaaagaaaacaacc |
1118 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
17988587 |
aatgccctaaaagacaacaacc |
17988566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 141 - 325
Target Start/End: Original strand, 20062376 - 20062561
Alignment:
| Q |
141 |
tgaagaattctaaggtaatgcttttccttagatgtagtgttgtatttgacaaagag-caaccaaaggccttgaaagttctatcccaaaacctaagaaaag |
239 |
Q |
| |
|
||||||| |||||||||||| | | || ||||||||| ||||| ||||||||| | || ||| |||||||| || | | ||| || ||||||| || |
|
|
| T |
20062376 |
tgaagaactctaaggtaatgttgtgccccagatgtagttcagtattcgacaaagaggctactaaaagccttgaacgtattgttccagaatctaagaagag |
20062475 |
T |
|
| Q |
240 |
agggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactcttcgactaccaatt |
325 |
Q |
| |
|
||| ||||||| |||||||| ||| ||||| || |||||||||||||||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
20062476 |
aggaaaatggtctactgatcatagaccaaagttctcttttactaagagttatattcctttcatcaataattcttcaaccaccaatt |
20062561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 111 - 359
Target Start/End: Complemental strand, 21380005 - 21379756
Alignment:
| Q |
111 |
aactgattgatttcctcaaccgatgcaagctgaagaattctaaggtaatgcttttccttagatgtagtgttgtatttgacaaagag-caaccaaaggcct |
209 |
Q |
| |
|
||||||||||||||||||| || || | | ||||||| |||||||| ||| | | || ||||| ||| ||| || ||||||||| | || ||| | || |
|
|
| T |
21380005 |
aactgattgatttcctcaatcgttgtaggttgaagaactctaaggttatggtatgccacagatgcagttttgcgttcgacaaagaggctactaaaagtct |
21379906 |
T |
|
| Q |
210 |
tgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataac |
309 |
Q |
| |
|
||| ||| ||| |||||| | ||||||||||| |||||||| | |||||||| ||| |||||||| || || || ||||||||| ||||||||||||| |
|
|
| T |
21379905 |
tgagggttttattccaaaatcaaagaaaagaggaaaatggtttgttgatcatagaccaaagttttcattcaccaaacgttatattcatttcatcaataac |
21379806 |
T |
|
| Q |
310 |
tcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgt |
359 |
Q |
| |
|
||||| || || | || || ||||| | ||||||||| ||| ||||||| |
|
|
| T |
21379805 |
tcttcaaccactagttatgttaataagaatggtcaagggaaaacttttgt |
21379756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 557
Target Start/End: Original strand, 24987277 - 24987817
Alignment:
| Q |
19 |
catcactaaagatgcaagatacttcgaagatactaccccagagcctcagttcgacgagaagttaagggcaacctatcttacagttgaagaagaactgatt |
118 |
Q |
| |
|
||||||||||||||||| | || ||||||| | | | ||| | |||||||||||||||| |||| || |||||| ||||| ||||||| || ||||| |
|
|
| T |
24987277 |
catcactaaagatgcaaaacacgtcgaagagattgctccata--ctcagttcgacgagaatttaaaaacagcctatcctacagctgaagaataattgatt |
24987374 |
T |
|
| Q |
119 |
gatttcctcaaccgatgcaagctgaagaattctaaggtaatgcttttccttagatgtagtgttgtatttgacaaagag-caaccaaaggccttgaaagtt |
217 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||| | || ||||||||||| | | |||||||||||| |||| |||||||| || ||| |
|
|
| T |
24987375 |
gatttcctcaatcgatgcaggctgaagaattctaaggtaatgctctgccctagatgtagtgctatgtttgacaaagaggcaactaaaggcctcaaaggtt |
24987474 |
T |
|
| Q |
218 |
ctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactcttcgac |
317 |
Q |
| |
|
| |||||||||||||||||||| || || |||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24987475 |
ccatcccaaaacctaagaaaaggggaaagtggtctagtgatcatagacctaagttttcctttacaaagagttatattcctttcatcaataactcttcgac |
24987574 |
T |
|
| Q |
318 |
taccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataagaatgtgcaacatggg |
417 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| || |||| ||||| | ||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
24987575 |
caccaattatgtcaataaaagtggtcaaggaaaagctttagtcccttatgcacccaaccaaaaatgggttcaatctacccataagaatgtgcaacatggt |
24987674 |
T |
|
| Q |
418 |
aaaaacaatgtggtgaaatgaaacaccagaattgttg---ataacaaaaatggtgatgcctttgcgtcaaagaagtttgcttacaacaacaattacaagg |
514 |
Q |
| |
|
|| ||||||| ||||||| ||| |||||| |||||| |||||||||||||| | |||||| ||| |||||||||||||| | |||||| ||||||| |
|
|
| T |
24987675 |
aagaacaatgcggtgaaaagaaccaccagtgttgttgataataacaaaaatggtactacctttgagtcgaagaagtttgcttatagcaacaactacaagg |
24987774 |
T |
|
| Q |
515 |
ggaagacccccatgacaaggactccatggagaaggtaccagag |
557 |
Q |
| |
|
| || | ||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
24987775 |
gaaataatcccatgataagaactcaatggagaaggtaccagag |
24987817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 5e-96
Query Start/End: Original strand, 15 - 559
Target Start/End: Original strand, 25566235 - 25566782
Alignment:
| Q |
15 |
tggacatcactaaagatgcaagatacttcgaagatactaccccagagcctcagttcgacgagaagttaagggcaacctatcttacagttgaagaagaact |
114 |
Q |
| |
|
|||||||||||||||||||| | || || |||| | | | ||| | |||||||||||||||||||||| ||||||||| |||| |||||||||| | |
|
|
| T |
25566235 |
tggacatcactaaagatgcagaacacgtcaaagagattgctccaaaacctcagttcgacgagaagttaaacacaacctatcctacaactgaagaagaatt |
25566334 |
T |
|
| Q |
115 |
gattgatttcctcaaccgatgcaagctgaagaattctaaggtaatgcttttccttagatgtagtgttgtatttgacaaagag-caaccaaaggccttgaa |
213 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| |||| ||||| | || ||||||||||||||| |||||||||||| ||| |||||||| ||| |
|
|
| T |
25566335 |
gattgacttcctcattcgatgcaagctgaagaattctgaggtgatgctctgccctagatgtagtgttgtgtttgacaaagaggcaagtaaaggcctcgaa |
25566434 |
T |
|
| Q |
214 |
agttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactctt |
313 |
Q |
| |
|
|| ||||||||||||||||||| | |||||||||| | |||||||| || ||||||||| ||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
25566435 |
-gtcctatcccaaaacctaagaagaaggggaaatggtctggtgatcatagacataagttttcatttacaaagagctatattcctttcattaataactctt |
25566533 |
T |
|
| Q |
314 |
cgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataagaatgtgcaaca |
413 |
Q |
| |
|
|||| ||||||| |||||| ||| |||||||||||||||||| || |||| ||||| | | ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25566534 |
cgaccaccaattatgtcaatcaaattggtcaaggaaaagctttagtcccttatgcacctaaccaaaaatgggttcagtcgacccataagaatgtgcaaca |
25566633 |
T |
|
| Q |
414 |
tgggaaaaacaatgtggtgaaatgaaacaccagaattgt---tgataacaaaaatggtgatgcctttgcgtcaaagaagtttgcttacaacaacaattac |
510 |
Q |
| |
|
|||||| |||||| |||||| | |||||||||| |||| | ||||||||||||||| | |||||| || | |||||||| ||| | ||||| || | |
|
|
| T |
25566634 |
tgggaagaacaatatggtgacaagaaacaccagtgttgtggataataacaaaaatggtgttccctttgaatcgaggaagtttgtttatagcaacagttgc |
25566733 |
T |
|
| Q |
511 |
aaggggaagacccccatgacaaggactccatggagaaggtaccagaggt |
559 |
Q |
| |
|
|| || |||| | ||||||||| | || |||||| ||||||| ||||| |
|
|
| T |
25566734 |
aaaggaaagaatcacatgacaagaaatcaatggaggaggtaccggaggt |
25566782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 632 - 757
Target Start/End: Complemental strand, 25579078 - 25578954
Alignment:
| Q |
632 |
cctaaccttagggaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagcatgagattaagaaggcctt |
731 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| | | ||||||||| ||| |||| || |||||||||||| ||| |||||||||| |||||| | |
|
|
| T |
25579078 |
cctagccttagggaatgatgaggatgatcatcacatctatgcaaaatgcttggagcaaaaccacggttgtttagccagagtatgagattaaaaaggccat |
25578979 |
T |
|
| Q |
732 |
aagtggctggcagtaaacgaaagatg |
757 |
Q |
| |
|
||||| ||||||| ||| ||||||| |
|
|
| T |
25578978 |
-agtggttggcagttaacaaaagatg |
25578954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 616 - 711
Target Start/End: Original strand, 25567721 - 25567817
Alignment:
| Q |
616 |
tggaaaatctaagttccctaaccttagggaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttg-tttagccggag |
711 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||| |||||||| |||||| ||| || || ||||||| ||||| ||||| ||||||||||| |
|
|
| T |
25567721 |
tggaaaatctgaattccctaaccttagggaatgctgaagatgatcaccacatctaagcaagattcttagagctgaatcacggttgttttagccggag |
25567817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 5e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 5e-93
Query Start/End: Original strand, 58 - 572
Target Start/End: Complemental strand, 16922929 - 16922410
Alignment:
| Q |
58 |
agagcctcagttcgacgagaagttaagggcaacctatcttacagttgaagaagaactgattgatttcctcaaccgatgcaagctgaagaattctaaggta |
157 |
Q |
| |
|
||||||||||||||||| |||| ||| | || |||||| ||||||||||||| || ||||||| || ||||| ||||||||||| |||||| | ||||| |
|
|
| T |
16922929 |
agagcctcagttcgacgggaagctaaagacagcctatcctacagttgaagaataattgattgactttctcaatcgatgcaagctagagaattttgaggta |
16922830 |
T |
|
| Q |
158 |
atgcttttccttagatgtagtgttgtatttgacaaagagc-aaccaaaggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatg |
256 |
Q |
| |
|
||||| | || ||||||||||||||| ||||||||| || ||| |||||||| ||| ||||||||||||||||||||||||| |||||||||| | || |
|
|
| T |
16922829 |
atgctctgccctagatgtagtgttgtgtttgacaaaaagagaactaaaggcctcgaaggttctatcccaaaacctaagaaaagggggaaatggtctgctg |
16922730 |
T |
|
| Q |
257 |
atcataaacctaagttttcctttactaagagttatattcctttcatcaataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttt |
356 |
Q |
| |
|
|||||| ||||| |||||||||||| ||||||||||||| |||||||||||||||||| || |||||| |||||| | |||||||| |||||| |||| |
|
|
| T |
16922729 |
atcatatacctacgttttcctttacaaagagttatattcatttcatcaataactcttcaacctccaattatgtcaatcagagtggtcacggaaaaacttt |
16922630 |
T |
|
| Q |
357 |
tgttccttgtgcacgtgatacaaagtgggttcagtcgacccataagaatgtgcaacatgggaaaaacaatgtggtgaaatgaaacaccagaattgttgat |
456 |
Q |
| |
|
|| |||| ||||| | ||| |||||||| |||||||| |||||||||||||||||||| |||||| |||||||| |||||||||| |||| ||| |
|
|
| T |
16922629 |
ggtcccttatgcaccaaaccaaaaatgggttcaatcgacccacaagaatgtgcaacatgggaagaacaatatggtgaaaagaaacaccagtgttgtggat |
16922530 |
T |
|
| Q |
457 |
---aacaaaaatggtgatgcctttgcgtcaaagaagtttgcttacaacaacaattacaaggggaagacccccatgacaaggactccatggagaaggtacc |
553 |
Q |
| |
|
|||||||||||| |||||||| ||| | ||||||| || | ||||||| ||||||| || | ||||||||||| |||| ||||| ||||||| |
|
|
| T |
16922529 |
aacaacaaaaatggtactgcctttgagtcgaggaagttttctcattacaacaactacaaggtaaataatcccatgacaagaactcagtggaggaggtacc |
16922430 |
T |
|
| Q |
554 |
agaggttcaa-aaaggcatt |
572 |
Q |
| |
|
|||||| ||| ||||||||| |
|
|
| T |
16922429 |
agaggtccaagaaaggcatt |
16922410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 884 - 1164
Target Start/End: Complemental strand, 21606836 - 21606560
Alignment:
| Q |
884 |
acaaattgaatctttggcaagtttggatggggctgatgaagcatttgggctgctctaacaacgcagaaaagcgcatggccactgaggatgagttgttgca |
983 |
Q |
| |
|
|||||| ||||| | |||||| | |||| |||||||| ||||| ||||| |||| ||||| |||||||||||||| | || ||| |||||||||| | |
|
|
| T |
21606836 |
acaaatagaatcatgggcaagctgagatgaggctgatggagcatctgggccgctcgaacaa---agaaaagcgcatggtcgctaagggtgagttgttg-a |
21606741 |
T |
|
| Q |
984 |
tgaacctccactgtcccacgttgggtgaagggatggtgagaaggtgtaaaaaatcgtcaaaaacatccctgagcacctcaatgtcctcagatatttggcg |
1083 |
Q |
| |
|
| ||| || ||| || | ||| ||||||| |||||||||||| |||||| |||| | |||||| ||||||||||||| |||||||||| |||||| |
|
|
| T |
21606740 |
taaacttcttctgacctaagttcggtgaagagatggtgagaagatgtaaacaatcagcgaaaacagccctgagcacctctgcatcctcagatagttggcg |
21606641 |
T |
|
| Q |
1084 |
gtgaagtattgcagatgccctaaaagaaaacaacctactaatgcttaaagcagcaaactttttggtaataaagagtcgaag |
1164 |
Q |
| |
|
|||||| |||| ||| ||||||| || ||||||| ||| |||| ||||||||| |||||| | |||||||||| |||| |
|
|
| T |
21606640 |
atgaagtgttgccgattccctaaaggacaacaaccctctactgctcgaagcagcaatctttttagcaataaagagttgaag |
21606560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 171; Significance: 3e-91; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 15 - 553
Target Start/End: Original strand, 79496 - 80037
Alignment:
| Q |
15 |
tggacatcactaaagatgcaagatacttcgaagatactaccccagagcctcagttcgacgagaagttaagggcaacctatcttacagttgaagaagaact |
114 |
Q |
| |
|
||||||||||||||||||||| | || | ||||| | | | ||||| ||| |||||||||||||| ||| | || |||| ||||| ||||||||| | |
|
|
| T |
79496 |
tggacatcactaaagatgcaaaacacgttgaagagattgctccagaaccttagttcgacgagaagataaaaacgacatatcctacagctgaagaagagtt |
79595 |
T |
|
| Q |
115 |
gattgatttcctcaaccgatgcaagctgaagaattctaaggtaatgcttttccttagatgtagtgttgtatttgacaaagag-caaccaaaggccttgaa |
213 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| |||||||||| | | ||| |||||| || ||||||||| | || | |||||||| ||| |
|
|
| T |
79596 |
gattgatttcctcaatcgatgcaagctaaagaattctgaggtaatgctctgtcccagaggtagtgccgtgtttgacaaaatgacatcgaaaggcctcgaa |
79695 |
T |
|
| Q |
214 |
agttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactctt |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| | |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
79696 |
ggttctaccccaaaacctaagaaaagagggaaatggtctggtgatcatagaccttagttttcctttacaaagagttatattcctttcatcaataactctt |
79795 |
T |
|
| Q |
314 |
cgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataagaatgtgcaaca |
413 |
Q |
| |
|
|||| || |||| |||||||||| || |||||||||||| ||||||||| ||||| ||| ||| |||||||| | |||||| || ||||| ||| | |
|
|
| T |
79796 |
cgaccacaaattatgtcaataaaattgttcaaggaaaagc--ttgttccttatgcaccgaataaaaaatgggttcaattgacccaaaataatgtacaaaa |
79893 |
T |
|
| Q |
414 |
tgggaaaaacaatgtggtgaaatgaaacaccagaattgttgat---aacaaaaatg-gtgatgcctttgcgtcaaagaagtttgcttacaacaacaatta |
509 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||| |||| ||| |||||||||| || | | |||| |||||||||||||||||| | ||||||||| |
|
|
| T |
79894 |
tgggaagaacaatgtggtaaaaggaaacaccaatgttgtggataaaaacaaaaatgtgtacttcatttgagtcaaagaagtttgcttatagcaacaatta |
79993 |
T |
|
| Q |
510 |
caaggggaagacccccatgacaaggactccatggagaaggtacc |
553 |
Q |
| |
|
|||||| |||| | ||||||||| |||| |||||||||||||| |
|
|
| T |
79994 |
caagggaaagaatcacatgacaagaactcaatggagaaggtacc |
80037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 5e-87; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 5e-87
Query Start/End: Original strand, 142 - 559
Target Start/End: Complemental strand, 24900253 - 24899832
Alignment:
| Q |
142 |
gaagaattctaaggtaatgcttttccttagatgtagtgttgtatttgacaaagag-caaccaaaggccttgaaagttctatcccaaaacctaagaaaaga |
240 |
Q |
| |
|
|||||||| | |||||||| | | || ||||||||||| |||||||||||||||| |||| |||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
24900253 |
gaagaattttgaggtaatggtctgccctagatgtagtgctgtatttgacaaagaggcaactaaaggcctcgaagattctatcccaaaacctaagaaaagg |
24900154 |
T |
|
| Q |
241 |
gggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactcttcgactaccaatttcgtcaataaaagtg |
340 |
Q |
| |
|
|| ||||||| | |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||| |
|
|
| T |
24900153 |
ggcaaatggtatggtgatcatagacctaagtttttctttacaaagagttatattcctttcatcaataactcttcgaccatcaattatgtcaataagagtg |
24900054 |
T |
|
| Q |
341 |
gtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataagaatgtgcaacatgggaaaaacaatgtggtgaaatgaaa |
440 |
Q |
| |
|
||||| ||||| |||| ||||||| ||||| | || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
24900053 |
gtcaacgaaaaactttggttccttatgcacccaaccagaaatgggttcagtctacccataagaatgtgcaacatgggaagaacaatgtggtgaaaagaag |
24899954 |
T |
|
| Q |
441 |
caccagaattgttgat---aacaaaaatggtgatgcctttgcgtcaaagaagtttgcttacaacaacaattacaaggggaagacccccatgacaaggact |
537 |
Q |
| |
|
|| ||| |||||||| ||||||||| || | |||||| || || |||| |||||| | |||||| |||||||| |||| ||||||||||||||| |
|
|
| T |
24899953 |
catcagtgttgttgataacaacaaaaattgtactacctttgagttgaaaaagtatgcttatagcaacaactacaagggaaagaatcccatgacaaggact |
24899854 |
T |
|
| Q |
538 |
ccatggagaaggtaccagaggt |
559 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
24899853 |
caatggagaaggtaccagaggt |
24899832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 56 - 196
Target Start/End: Complemental strand, 22261740 - 22261600
Alignment:
| Q |
56 |
ccagagcctcagttcgacgagaagttaagggcaacctatcttacagttgaagaagaactgattgatttcctcaaccgatgcaagctgaagaattctaagg |
155 |
Q |
| |
|
||||| |||||||| |||||||||||| | | |||||| ||||||||| |||||| ||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
22261740 |
ccagaccctcagtttaacgagaagttaaagactgcctatcctacagttgaggaagaattgattgatttccttaatcgatgcaagctgaagaattctaagg |
22261641 |
T |
|
| Q |
156 |
taatgcttttccttagatgtagtgttgtatttgacaaagag |
196 |
Q |
| |
|
||||||| | || ||||||||||| ||| |||||||||||| |
|
|
| T |
22261640 |
taatgctctgccctagatgtagtgatgtgtttgacaaagag |
22261600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 382 - 445
Target Start/End: Complemental strand, 22261515 - 22261452
Alignment:
| Q |
382 |
tgggttcagtcgacccataagaatgtgcaacatgggaaaaacaatgtggtgaaatgaaacacca |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22261515 |
tgggttcagtcgacccataagaatgtgcaacatgggaaaaacaatgtggtgaaaagaaacacca |
22261452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 12152860 - 12152771
Alignment:
| Q |
107 |
gaagaactgattgatttcctcaaccgatgcaagctgaagaattctaaggtaatgcttttccttagatgtagtgttgtatttgacaaagag |
196 |
Q |
| |
|
||||||||| |||| |||||||| | ||||| ||||||||||| | |||||||||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
12152860 |
gaagaactggttgacttcctcaatcaatgcacgctgaagaattatgaggtaatgctttgccttagatgtagcattgtagttgacaaagag |
12152771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 24900345 - 24900248
Alignment:
| Q |
15 |
tggacatcactaaagatgcaagatacttcgaagatactaccccagagcctcagttcgacgagaagttaagggcaacctatcttacagttgaagaagaa |
112 |
Q |
| |
|
|||||||||||||||||| | | || ||||||| ||||| ||||||| |||||| ||||| ||||||| | ||||||| | ||||| |||||||||| |
|
|
| T |
24900345 |
tggacatcactaaagatgtagaacacgtcgaagagactactccagagcttcagtttgacgataagttaaagacaacctaccctacagatgaagaagaa |
24900248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 161; Significance: 3e-85; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 763 - 1159
Target Start/End: Complemental strand, 224077 - 223681
Alignment:
| Q |
763 |
aaaaagatcattgaagagggacaaaacgtggtccctgttgaaaccctcactggccgacaccctcagcatgatcataaaatatgtggcttcatatgattct |
862 |
Q |
| |
|
|||||| |||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| || ||| |
|
|
| T |
224077 |
aaaaagctcattgaagaggaacaaaatgtcatccctgttgaaaccctcactggccaacaccctcagcatgatcagaaaatatgtggcttcatccgactct |
223978 |
T |
|
| Q |
863 |
acaaagtaggggttactcaacacaaattgaatctttggcaagtttggatggggctgatgaagcatttgggctgctctaacaacgcagaaaagcgcatggc |
962 |
Q |
| |
|
| ||| ||| || |||||||||||| ||||| |||| ||||| ||||||| |||||||||| ||||| |||||||| | ||||||||||||||||| |
|
|
| T |
223977 |
gcgaagaaggcatttctcaacacaaatcgaatccttggtaagttgggatgggatggatgaagcatctgggccgctctaacgatgcagaaaagcgcatggc |
223878 |
T |
|
| Q |
963 |
cactgaggatgagttgttgcatgaacctccactgtcccacgttgggtgaagggatggtgagaaggtgtaaaaaatcgtcaaaaacatccctgagcacctc |
1062 |
Q |
| |
|
|||||||| |||||| |||||||||||||| ||||||||||| || ||||| ||||| |||||||||||| || || | ||| |||| || ||||| |
|
|
| T |
223877 |
cactgagggtgagttattgcatgaacctcctatgtcccacgttaggcgaaggaatggtaagaaggtgtaaacggtcagcagacacagccctaagaacctc |
223778 |
T |
|
| Q |
1063 |
aatgtcctcagatatttggcggtgaagtattgcagatgccctaaaagaaaacaacctactaatgcttaaagcagcaaactttttggtaataaagagt |
1159 |
Q |
| |
|
|| ||| | ||||| ||||||||| || |||||||||||||||||||| ||||||| ||| |||| ||||||||| |||||||| |||||||||| |
|
|
| T |
223777 |
aacgtctttagatagttggcggtggagcattgcagatgccctaaaagacaacaaccctctactgctcgaagcagcaatctttttggaaataaagagt |
223681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 7e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 7e-83
Query Start/End: Original strand, 114 - 461
Target Start/End: Complemental strand, 2284939 - 2284591
Alignment:
| Q |
114 |
tgattgatttcctcaaccgatgcaagctgaagaattctaaggtaatgcttttccttagatgtagtgttgtatttgacaaaga-gcaaccaaaggccttga |
212 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| |||||||||| | || | |||||||||||| ||||| ||||| ||||| ||||| || || |
|
|
| T |
2284939 |
tgattgatttcttcaattgatgcaagctgaagaattctgaggtaatgctctgccacaaatgtagtgttgtgtttgataaagaagcaactaaaggtctcga |
2284840 |
T |
|
| Q |
213 |
aagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactct |
312 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
2284839 |
aggttctatcccaaaacctaagaaaagagggaaatggtatggtgatcatagacctaagttttcctttacaaagagttatattcctttgatcaataactct |
2284740 |
T |
|
| Q |
313 |
tcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataagaatgtgcaac |
412 |
Q |
| |
|
|| || ||||| | || ||| |||||||||||||||||| ||| || |||| ||||| | ||| ||||||||||| ||||||||| ||||||||| |
|
|
| T |
2284739 |
tccaccaccaactatgttaatcaaagtggtcaaggaaaagttttagtcccttatgcacccaaccaaaattgggttcagtcaacccataagtatgtgcaac |
2284640 |
T |
|
| Q |
413 |
atgggaaaaacaatgtggtgaaatgaaacaccagaattgttgataacaa |
461 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| |||| |||||||| |
|
|
| T |
2284639 |
atgggaagaacaatgtggtgaaaagaaacaccagtgttgtggataacaa |
2284591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 9e-67
Query Start/End: Original strand, 58 - 446
Target Start/End: Complemental strand, 17136654 - 17136265
Alignment:
| Q |
58 |
agagcctcagttcgacgagaagttaagggcaacctatcttacagttgaagaagaactgattgatttcctcaaccgatgcaagctgaagaattctaaggta |
157 |
Q |
| |
|
||||| ||| ||||||||||||| | | || ||||| ||||| ||||||| || ||||| | |||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
17136654 |
agagcttcacttcgacgagaagtggaagacagtctatcctacagctgaagaataattgattaacttcctcaatcgatgcaagctgaagaattctgaggta |
17136555 |
T |
|
| Q |
158 |
atgcttttccttagatgtagtgttgtatttgacaaagag-caaccaaaggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatg |
256 |
Q |
| |
|
||||| | || |||||||||| | | ||||| |||||| |||| || ||||| ||| |||||||||||||||||||||||| |||||||||| | || |
|
|
| T |
17136554 |
atgctctgccctagatgtagttctatgtttgaaaaagaggcaactaagggcctcgaaggttctatcccaaaacctaagaaaatggggaaatggtctgctg |
17136455 |
T |
|
| Q |
257 |
atcataaacctaagttttcctttactaagagttatattcctttcatcaataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttt |
356 |
Q |
| |
|
| |||| |||||||||||| || || |||||||||||| ||||||| |||||||||||| ||||||| |||||| | ||||||||||||||| ||| |
|
|
| T |
17136454 |
accatagacctaagttttctttcaccaagagttatatttatttcatcgataactcttcgatcaccaattatgtcaatcagagtggtcaaggaaaaatttt |
17136355 |
T |
|
| Q |
357 |
tgttccttgtgcacgtgatacaaagtgggttcagtcgacccataagaatgtgcaacatgggaaaaacaatgtggtgaaatgaaacaccag |
446 |
Q |
| |
|
|| |||| ||||| | ||| |||||| |||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
17136354 |
ggtcccttatgcaccaaaccaaaaatgggttaagtcgacccacaagaatgtgcaacatggggaaaacaatgtggtgaaaagaaacaccag |
17136265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 638 - 708
Target Start/End: Complemental strand, 17136087 - 17136017
Alignment:
| Q |
638 |
cttagggaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccg |
708 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||| || ||||||||| |||||| |||||||||||| |
|
|
| T |
17136087 |
cttagggaatgatgaaggtgatcatcacatctaagcaagatgcttagaatcaaatcacagttgtttagccg |
17136017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1720 (Bit Score: 130; Significance: 9e-67; HSPs: 1)
Name: scaffold1720
Description:
Target: scaffold1720; HSP #1
Raw Score: 130; E-Value: 9e-67
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 489 - 770
Alignment:
| Q |
15 |
tggacatcactaaagatgcaagatacttcgaagatactaccccagagcctcagttcgacgagaagttaagggcaacctatcttacagttgaagaagaact |
114 |
Q |
| |
|
|||||||||||| || |||| || || ||||||| ||||||||| |||||||||||||||||||||||| | || ||||||||||| |||||| ||| | |
|
|
| T |
489 |
tggacatcactataggtgcaggacacgtcgaagagactaccccaaagcctcagttcgacgagaagttaaagacattctatcttacagctgaagaggaatt |
588 |
T |
|
| Q |
115 |
gattgatttcctcaaccgatgcaagctgaagaattctaaggtaatgcttttccttagatgtagtgttgtatttgacaaaga-gcaaccaaaggccttgaa |
213 |
Q |
| |
|
|||||| |||||||| | ||||| | |||||||||| |||||||||||| | ||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
589 |
gattgacttcctcaatcaatgcacgatgaagaattcagaggtaatgctttgctctagatgtagtgttgtatttgacaaagaggcaactaaaggccttgag |
688 |
T |
|
| Q |
214 |
agttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattc |
295 |
Q |
| |
|
||| | ||| ||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
689 |
agtaccatctcaaaacctaagaaaagaggaaaatggtctagtgatcataaacctaggttttcctttacaaagagttatattc |
770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 4e-44; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 783 - 958
Target Start/End: Original strand, 11886955 - 11887130
Alignment:
| Q |
783 |
acaaaacgtggtccctgttgaaaccctcactggccgacaccctcagcatgatcataaaatatgtggcttcatatgattctacaaagtaggggttactcaa |
882 |
Q |
| |
|
||||||||| |||||| | |||||| || | ||| |||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||| ||||| || |
|
|
| T |
11886955 |
acaaaacgtcgtccctatcgaaaccttcgccggctaacaccctcagcatgatcagaaaatatgtggcttcatctgactctgcaaagtaggcattacttaa |
11887054 |
T |
|
| Q |
883 |
cacaaattgaatctttggcaagtttggatggggctgatgaagcatttgggctgctctaacaacgcagaaaagcgca |
958 |
Q |
| |
|
||||| ||||||| |||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||| |
|
|
| T |
11887055 |
cacaagttgaatccttggcaagttgggatggggctgatgaagcatttgggccgctctaaccacgcagaatagcgca |
11887130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 612 - 732
Target Start/End: Original strand, 11885836 - 11885956
Alignment:
| Q |
612 |
aatgtggaaaatctaagttccctaaccttagggaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggag |
711 |
Q |
| |
|
|||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
11885836 |
aatgtggagaatctgaattccctagccttagggaatgatgaggatgatcatcacatctaagaaaaatgcatagaacaaaatcacggttgtttagccggag |
11885935 |
T |
|
| Q |
712 |
catgagattaagaaggcctta |
732 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
11885936 |
catgagatcaagaaggcctta |
11885956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1055 - 1155
Target Start/End: Original strand, 11887169 - 11887269
Alignment:
| Q |
1055 |
agcacctcaatgtcctcagatatttggcggtgaagtattgcagatgccctaaaagaaaacaacctactaatgcttaaagcagcaaactttttggtaataa |
1154 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| |||||| |||||||||||||||| ||||||| || | ||| ||||||||| |||||||| ||||| |
|
|
| T |
11887169 |
agcacctcaacatcctcagatagttggcggtggagtatttcagatgccctaaaagacaacaaccctatacttcttgaagcagcaatctttttggcaataa |
11887268 |
T |
|
| Q |
1155 |
a |
1155 |
Q |
| |
|
| |
|
|
| T |
11887269 |
a |
11887269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 14943625 - 14943572
Alignment:
| Q |
382 |
tgggttcagtcgacccataagaatgtgcaacatgggaaaaacaatgtggtgaaa |
435 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||| ||||| ||||||||| |
|
|
| T |
14943625 |
tgggttcagtcgacccataaaaatgttcagtatgggaagaacaaagtggtgaaa |
14943572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 629 - 711
Target Start/End: Original strand, 111742 - 111824
Alignment:
| Q |
629 |
ttccctaaccttagggaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggag |
711 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||||| ||| | ||| ||||| |||||| |||||| ||||||||| |
|
|
| T |
111742 |
ttccctaactttggggaatgatgaagatgatcatcacatctaagcaggatgattagaatcaaatcacggttgtgtagccggag |
111824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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