View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8890_low_101 (Length: 228)

Name: NF8890_low_101
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8890_low_101
NF8890_low_101
[»] chr7 (35 HSPs)
chr7 (3-200)||(22087433-22087632)
chr7 (95-225)||(25255382-25255512)
chr7 (141-228)||(34899459-34899546)
chr7 (150-228)||(9449998-9450076)
chr7 (150-228)||(19297022-19297100)
chr7 (141-228)||(22743096-22743183)
chr7 (129-228)||(38050906-38051005)
chr7 (141-228)||(48061574-48061661)
chr7 (122-228)||(48930859-48930965)
chr7 (141-228)||(12141159-12141247)
chr7 (141-228)||(8001398-8001485)
chr7 (141-228)||(37837310-37837397)
chr7 (141-228)||(40993309-40993396)
chr7 (141-228)||(42978762-42978849)
chr7 (141-228)||(45349651-45349738)
chr7 (142-228)||(38798933-38799019)
chr7 (122-228)||(46822576-46822681)
chr7 (163-228)||(13796803-13796868)
chr7 (131-228)||(39229166-39229262)
chr7 (163-226)||(5348466-5348529)
chr7 (141-228)||(19404609-19404696)
chr7 (141-228)||(28044608-28044695)
chr7 (141-228)||(28407770-28407857)
chr7 (141-228)||(39171442-39171529)
chr7 (141-228)||(48316664-48316751)
chr7 (141-219)||(433523-433601)
chr7 (134-228)||(9977055-9977149)
chr7 (110-228)||(28476378-28476496)
chr7 (142-228)||(35133099-35133185)
chr7 (157-219)||(35261464-35261526)
chr7 (123-200)||(26610614-26610691)
chr7 (188-228)||(17773424-17773464)
chr7 (188-228)||(25287085-25287125)
chr7 (108-228)||(26623608-26623728)
chr7 (144-228)||(47590463-47590547)
[»] chr6 (33 HSPs)
chr6 (108-228)||(13546520-13546640)
chr6 (113-228)||(9380174-9380289)
chr6 (134-228)||(33053013-33053107)
chr6 (141-228)||(12170619-12170706)
chr6 (141-228)||(23128769-23128856)
chr6 (141-228)||(7515054-7515141)
chr6 (141-228)||(20226002-20226089)
chr6 (141-228)||(22119986-22120073)
chr6 (134-228)||(67846-67940)
chr6 (134-228)||(9341496-9341590)
chr6 (122-228)||(30776814-30776920)
chr6 (156-228)||(14801978-14802050)
chr6 (141-225)||(21426538-21426622)
chr6 (132-228)||(31296971-31297067)
chr6 (141-228)||(3913426-3913513)
chr6 (141-228)||(29255298-29255385)
chr6 (141-228)||(34018711-34018798)
chr6 (142-228)||(606355-606441)
chr6 (134-228)||(14174916-14175010)
chr6 (134-228)||(14179452-14179546)
chr6 (142-228)||(30608368-30608454)
chr6 (157-228)||(546182-546253)
chr6 (108-175)||(6957345-6957412)
chr6 (132-219)||(7976030-7976117)
chr6 (113-228)||(26588296-26588411)
chr6 (141-228)||(30894750-30894836)
chr6 (142-228)||(1933545-1933631)
chr6 (141-219)||(17334920-17334998)
chr6 (183-228)||(14846115-14846160)
chr6 (106-163)||(32134411-32134468)
chr6 (141-228)||(32327072-32327156)
chr6 (141-228)||(127820-127905)
chr6 (141-225)||(32060030-32060114)
[»] chr1 (45 HSPs)
chr1 (141-228)||(45415711-45415798)
chr1 (113-228)||(14489425-14489540)
chr1 (122-228)||(36775543-36775649)
chr1 (122-228)||(48750338-48750444)
chr1 (131-222)||(5600924-5601015)
chr1 (141-228)||(7337515-7337602)
chr1 (149-228)||(14872792-14872871)
chr1 (110-228)||(18939472-18939591)
chr1 (144-228)||(9341879-9341963)
chr1 (157-228)||(19061062-19061133)
chr1 (141-228)||(19596312-19596399)
chr1 (141-228)||(24583299-24583386)
chr1 (141-228)||(31919142-31919229)
chr1 (141-228)||(35484243-35484330)
chr1 (142-228)||(13144665-13144751)
chr1 (122-228)||(34412925-34413031)
chr1 (144-228)||(37720004-37720088)
chr1 (141-228)||(10776313-10776400)
chr1 (157-228)||(34529227-34529298)
chr1 (141-228)||(34878130-34878217)
chr1 (141-228)||(49627066-49627153)
chr1 (150-228)||(5983989-5984067)
chr1 (134-228)||(15431511-15431605)
chr1 (142-228)||(21947471-21947557)
chr1 (109-227)||(30712121-30712239)
chr1 (122-228)||(31317889-31317995)
chr1 (188-228)||(4413267-4413307)
chr1 (132-228)||(47133056-47133152)
chr1 (141-228)||(11462334-11462421)
chr1 (141-228)||(16989524-16989611)
chr1 (149-228)||(21687531-21687610)
chr1 (141-228)||(44543425-44543512)
chr1 (141-228)||(44915792-44915879)
chr1 (142-228)||(6017683-6017769)
chr1 (170-228)||(6217704-6217762)
chr1 (131-228)||(19052156-19052253)
chr1 (141-219)||(19715727-19715805)
chr1 (142-228)||(28053570-28053656)
chr1 (141-219)||(40880845-40880923)
chr1 (141-219)||(45425898-45425976)
chr1 (141-219)||(48217608-48217686)
chr1 (143-228)||(16161981-16162066)
chr1 (130-219)||(39927376-39927465)
chr1 (112-225)||(45789697-45789809)
chr1 (131-219)||(18569133-18569221)
[»] chr8 (33 HSPs)
chr8 (106-228)||(5046905-5047027)
chr8 (134-228)||(31013451-31013545)
chr8 (110-228)||(43833815-43833933)
chr8 (142-228)||(45445662-45445748)
chr8 (141-228)||(23230795-23230882)
chr8 (113-228)||(41060085-41060200)
chr8 (142-228)||(37971435-37971521)
chr8 (122-228)||(41896669-41896775)
chr8 (141-228)||(7198045-7198132)
chr8 (141-228)||(7883091-7883178)
chr8 (141-228)||(16928607-16928694)
chr8 (110-228)||(14585829-14585947)
chr8 (134-228)||(25190908-25191002)
chr8 (141-228)||(3673593-3673680)
chr8 (141-228)||(10377841-10377928)
chr8 (141-228)||(27110315-27110402)
chr8 (141-228)||(30568171-30568258)
chr8 (141-219)||(33896260-33896338)
chr8 (110-175)||(26468969-26469034)
chr8 (141-228)||(17693463-17693551)
chr8 (141-228)||(15344460-15344547)
chr8 (141-228)||(15433525-15433612)
chr8 (141-228)||(15524829-15524916)
chr8 (141-219)||(2656044-2656122)
chr8 (162-228)||(12184441-12184507)
chr8 (162-228)||(12428869-12428935)
chr8 (158-228)||(29617141-29617211)
chr8 (122-228)||(42046373-42046479)
chr8 (155-228)||(18890563-18890636)
chr8 (157-221)||(10832154-10832218)
chr8 (188-228)||(20553138-20553178)
chr8 (132-228)||(33347362-33347458)
chr8 (184-228)||(39657606-39657650)
[»] scaffold0603 (1 HSPs)
scaffold0603 (108-228)||(7865-7986)
[»] chr5 (26 HSPs)
chr5 (141-228)||(14211376-14211463)
chr5 (122-228)||(2979139-2979245)
chr5 (150-228)||(31391614-31391692)
chr5 (141-228)||(9113577-9113664)
chr5 (141-228)||(13422082-13422169)
chr5 (141-228)||(38597946-38598033)
chr5 (110-228)||(19121061-19121179)
chr5 (110-228)||(28540727-28540845)
chr5 (141-228)||(10722910-10722997)
chr5 (141-228)||(11976787-11976874)
chr5 (157-225)||(11867801-11867869)
chr5 (141-228)||(8096350-8096437)
chr5 (141-228)||(13007378-13007465)
chr5 (141-228)||(24229636-24229723)
chr5 (141-228)||(26825579-26825666)
chr5 (141-228)||(34945542-34945629)
chr5 (131-228)||(8088054-8088151)
chr5 (157-228)||(7886787-7886858)
chr5 (141-228)||(14082248-14082335)
chr5 (141-228)||(14726313-14726400)
chr5 (141-228)||(25980306-25980393)
chr5 (142-228)||(6011991-6012077)
chr5 (142-228)||(26877962-26878047)
chr5 (110-228)||(39567419-39567537)
chr5 (141-219)||(43148896-43148974)
chr5 (188-228)||(19103366-19103406)
[»] chr3 (47 HSPs)
chr3 (141-228)||(38142674-38142761)
chr3 (141-228)||(48650586-48650673)
chr3 (130-228)||(30830124-30830222)
chr3 (122-228)||(42460898-42461004)
chr3 (141-228)||(45568297-45568384)
chr3 (141-228)||(51303495-51303582)
chr3 (122-228)||(27856314-27856420)
chr3 (122-203)||(24175964-24176045)
chr3 (141-228)||(628775-628862)
chr3 (141-228)||(43017037-43017124)
chr3 (141-228)||(44959825-44959912)
chr3 (141-228)||(52922969-52923056)
chr3 (122-228)||(21289647-21289753)
chr3 (122-228)||(51923876-51923982)
chr3 (132-228)||(50194178-50194274)
chr3 (141-228)||(9998616-9998703)
chr3 (141-228)||(10108385-10108472)
chr3 (141-228)||(10229625-10229712)
chr3 (141-228)||(12050500-12050587)
chr3 (141-228)||(21313185-21313272)
chr3 (141-228)||(21431762-21431849)
chr3 (141-228)||(21533661-21533748)
chr3 (141-228)||(33580029-33580116)
chr3 (157-228)||(38859980-38860051)
chr3 (141-228)||(53807710-53807797)
chr3 (110-203)||(43564502-43564595)
chr3 (163-228)||(46220812-46220877)
chr3 (152-228)||(29922206-29922282)
chr3 (152-228)||(29971359-29971435)
chr3 (141-225)||(32701643-32701727)
chr3 (144-228)||(43488445-43488529)
chr3 (157-228)||(4711631-4711702)
chr3 (141-228)||(6954548-6954635)
chr3 (110-228)||(7546764-7546883)
chr3 (141-228)||(8914861-8914948)
chr3 (141-228)||(19619862-19619949)
chr3 (181-228)||(20987647-20987694)
chr3 (141-228)||(38545948-38546035)
chr3 (141-228)||(40556851-40556938)
chr3 (142-228)||(7448767-7448853)
chr3 (142-228)||(7456909-7456995)
chr3 (150-228)||(10233219-10233297)
chr3 (49-78)||(633114-633143)
chr3 (122-175)||(48199983-48200036)
chr3 (132-228)||(4821955-4822051)
chr3 (118-190)||(32460787-32460859)
chr3 (156-228)||(40487474-40487546)
[»] chr2 (36 HSPs)
chr2 (141-228)||(11985086-11985173)
chr2 (108-228)||(17151584-17151704)
chr2 (108-228)||(18107570-18107690)
chr2 (141-228)||(7646638-7646725)
chr2 (108-228)||(12554000-12554121)
chr2 (95-212)||(28871595-28871712)
chr2 (141-226)||(31788618-31788703)
chr2 (132-228)||(37994444-37994540)
chr2 (141-228)||(4778913-4779000)
chr2 (141-228)||(18763628-18763715)
chr2 (118-228)||(19597999-19598109)
chr2 (141-228)||(27097260-27097347)
chr2 (141-228)||(29279423-29279510)
chr2 (141-228)||(32448469-32448556)
chr2 (141-228)||(37876459-37876546)
chr2 (122-228)||(3309105-3309211)
chr2 (122-228)||(10237050-10237156)
chr2 (150-228)||(32190824-32190902)
chr2 (142-228)||(33585589-33585675)
chr2 (141-228)||(4100496-4100582)
chr2 (141-228)||(12677304-12677390)
chr2 (141-228)||(17249000-17249087)
chr2 (142-228)||(4041448-4041534)
chr2 (142-228)||(16376099-16376185)
chr2 (141-228)||(9169110-9169198)
chr2 (131-219)||(27477319-27477407)
chr2 (141-221)||(35220495-35220575)
chr2 (141-228)||(1421836-1421922)
chr2 (141-228)||(4903998-4904085)
chr2 (141-228)||(10929825-10929912)
chr2 (149-228)||(36692034-36692113)
chr2 (142-228)||(19028768-19028854)
chr2 (122-228)||(28533788-28533894)
chr2 (141-219)||(41431199-41431277)
chr2 (95-228)||(33760000-33760133)
chr2 (131-219)||(8806037-8806125)
[»] chr4 (26 HSPs)
chr4 (110-228)||(43853613-43853731)
chr4 (122-228)||(52060756-52060862)
chr4 (110-228)||(36194878-36194996)
chr4 (142-228)||(48257485-48257571)
chr4 (141-224)||(2520953-2521036)
chr4 (142-228)||(19853365-19853451)
chr4 (134-228)||(43095798-43095892)
chr4 (128-228)||(12199533-12199632)
chr4 (141-225)||(31891139-31891223)
chr4 (122-228)||(1621344-1621448)
chr4 (141-228)||(22611353-22611440)
chr4 (141-228)||(56040498-56040585)
chr4 (158-228)||(33921224-33921294)
chr4 (141-193)||(52097748-52097800)
chr4 (149-228)||(21686102-21686181)
chr4 (141-228)||(35348477-35348564)
chr4 (157-228)||(47320280-47320351)
chr4 (141-228)||(51888063-51888150)
chr4 (141-228)||(53811198-53811284)
chr4 (110-228)||(27652113-27652231)
chr4 (110-228)||(36161881-36161999)
chr4 (183-228)||(10496505-10496550)
chr4 (143-228)||(17949178-17949263)
chr4 (143-228)||(17953030-17953115)
chr4 (164-225)||(40068782-40068843)
chr4 (130-203)||(48006605-48006678)
[»] scaffold0064 (1 HSPs)
scaffold0064 (110-228)||(18904-19021)
[»] scaffold0884 (1 HSPs)
scaffold0884 (141-228)||(1825-1912)
[»] scaffold0445 (1 HSPs)
scaffold0445 (141-228)||(1494-1581)
[»] scaffold0088 (1 HSPs)
scaffold0088 (142-228)||(50926-51012)
[»] scaffold0136 (1 HSPs)
scaffold0136 (141-228)||(9894-9981)
[»] scaffold0888 (1 HSPs)
scaffold0888 (122-228)||(1511-1617)
[»] scaffold0050 (1 HSPs)
scaffold0050 (142-228)||(65895-65981)
[»] scaffold0347 (1 HSPs)
scaffold0347 (141-228)||(6180-6267)
[»] scaffold0311 (1 HSPs)
scaffold0311 (144-219)||(8858-8933)
[»] scaffold0026 (1 HSPs)
scaffold0026 (149-228)||(71730-71809)
[»] scaffold0017 (1 HSPs)
scaffold0017 (141-228)||(32599-32686)
[»] scaffold0127 (1 HSPs)
scaffold0127 (156-228)||(15642-15714)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 22087632 - 22087433
Alignment:
Q  3 gtaatgcttttgtagtttgacgaaaataaataaagatttct-ttctatttaatccaccaataaattcttacttttttggaacatagtttttt-ccattcc 100  Q
    |||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22087632 gtaatgcttttgtagtttgacgaaaataaaaaaagatttttattctatttaatccaccaataaattcttacttttttggaacatagtttttttccattcc 22087533  T
Q  101 aatagaaagtacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtataca 200  Q
    | || | ||||||||||||||||||||||||| |||||| ||||||||||||| |||||||  | |||||||||| ||| || ||||||||||| |||||    
T  22087532 attacagagtacatcaaatataataacatgttgaacattgctaaaaatgtaaaaggtgaatcggtgaataaactcacaacattcaaattaatagcataca 22087433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 25255512 - 25255382
Alignment:
Q  95 cattccaatagaaagtacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatag 194  Q
    ||||| ||| || |||||||||||||||||||||||||||| ||  ||||||| ||||| |||| || |||||| |||||| ||| ||| || |||||||    
T  25255512 cattcaaattgagagtacatcaaatataataacatgttcaatatcgctaaaaacgtaaagggtgtatctgcgaacaaactcacaacatctaagttaatag 25255413  T
Q  195 tatacaacagaaaaatgcctacaaataatat 225  Q
     |||||||   ||||||||||||||| ||||    
T  25255412 catacaacgacaaaatgcctacaaatgatat 25255382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 34899459 - 34899546
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||| |||||| ||||||| ||||||| | ||||||| |||||||||||||||    
T  34899459 ctaaaaacgtaaagggtgaatctgcgaacaaactcacaacatccaagttaatagcatacaacggcaaaatgcatacaaataatatgat 34899546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 9449998 - 9450076
Alignment:
Q  150 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||| |||||||||||||| |||||| ||| | | |||||||||| ||||||| | |||||||||||||||||||||||    
T  9449998 taaagggtgaatatgcgaacaaactcacaacacctaaattaatagcatacaacggcaaaatgcctacaaataatatgat 9450076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 19297100 - 19297022
Alignment:
Q  150 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||| ||||||| |||||| |||||| ||| | |||||||||||| ||| ||||| |||||||||||||||||||||||    
T  19297100 taaagggtgaatctgcgaacaaactcacaacacccaaattaatagcatataacagcaaaatgcctacaaataatatgat 19297022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 22743183 - 22743096
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||| | ||||||| |||||| |||||| ||| | |||||||||||| ||||||| | |||||||| ||||||||||||||    
T  22743183 ctaaaaacgtatagggtgaatctgcgaaaaaactcccaacacccaaattaatagcatacaacggcaaaatgccaacaaataatatgat 22743096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 38050906 - 38051005
Alignment:
Q  129 tgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||  ||||||||||||| ||||||| | | |||||| || ||| |||||||| ||||| ||||||||  |||||| ||||| ||||||||||    
T  38050906 tgttcaacatcgctaaaaatgtaaagggtgaatttacaaataaattcacaacatccaaatcaatagaatacaacaataaaatgtctacatataatatgat 38051005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 48061661 - 48061574
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| ||||||  || | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  48061661 ctaaaaacgtaaagggtgaatctgcgaacaaactcataacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 48061574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 48930965 - 48930859
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| ||  ||||||| ||| | | ||||| |||||| |||||| ||||| |||| ||||||| ||||||| | |||||||| |||||||    
T  48930965 aataacatgatcaatatcgctaaaaacgtataggttgaatctgcgaacaaactcacaatacccaagttaatagcatacaacggcaaaatgccaacaaata 48930866  T
Q  222 atatgat 228  Q
    |||||||    
T  48930865 atatgat 48930859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 12141159 - 12141247
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaa-ttaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| |||||||||||||| |||||| ||| | || || ||||||| ||||||| | ||||||| |||||||||||||||    
T  12141159 ctaaaaacgtaaaaggtgaatatgcgaacaaactcacaacaacccaagttaatagcatacaacggcaaaatgcatacaaataatatgat 12141247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 8001398 - 8001485
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||  | |||| ||||||| ||||||| | |||||||||| ||||||||||||    
T  8001398 ctaaaaacgtaaagggtgaatctgcgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctataaataatatgat 8001485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 37837310 - 37837397
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| |||||||||||||| |||||| ||  | |||| ||||||| ||| ||| | ||||||||||||| |||||||||    
T  37837310 ctaaaaacgtaaagggtgaatatgcgaacaaactcacagcacccaagttaatagcataaaacggcaaaatgcctacaagtaatatgat 37837397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 40993396 - 40993309
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||| | |||| ||||||  |||||||   |||||||||||||||||||||||    
T  40993396 ctaaaaacgtaaagggtgaatctgcgaacaaactcacaacacccaagttaataacatacaacgacaaaatgcctacaaataatatgat 40993309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 42978849 - 42978762
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| ||||||  ||||| ||| | |||| ||||||| ||||||| | |||||||||||| ||||||||||    
T  42978849 ctaaaaacgtaaagggtgaatctgcgaacgaactcacaacacccaagttaatagcatacaacggcaaaatgcctacatataatatgat 42978762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 45349651 - 45349738
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||  |||||| |||||| ||| | |||| ||||||| ||| ||| | |||||||||||||||||||||||    
T  45349651 ctaaaaacgtaaagggtgaacctgcgaacaaactcacaacacccaagttaatagcataaaacggcaaaatgcctacaaataatatgat 45349738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 38799019 - 38798933
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||| | ||||||| |||||| |||||| ||| |||||| ||||||| |||  || | |||||||||||||||||||||||    
T  38799019 taaaaacgtacaaggtgaatctgcgaacaaactcacaacatccaagttaatagcataagacggcaaaatgcctacaaataatatgat 38798933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 46822576 - 46822681
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||||||  ||| ||| |||||  ||||||||||||| |||||| ||| |||||| ||||||| ||||||    |||||| |||||||||    
T  46822576 aataacatgatcaacatcgctacaaacgtaaaaagtgaatatgcgaacaaactcacaacatccaagttaatagcatacaatgacaaaatg-ctacaaata 46822674  T
Q  222 atatgat 228  Q
    |||||||    
T  46822675 atatgat 46822681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 13796803 - 13796868
Alignment:
Q  163 tgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| |||||| ||| |||||| ||||||| |||||||   |||||||||||||||||||||||    
T  13796803 tgcgaacaaactcacaacatccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 13796868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 39229262 - 39229166
Alignment:
Q  131 ttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||||  |||||| ||||| | ||||| ||| |  |||||| ||| ||||||||||| || ||||||| ||||||||||||||||| |||||||    
T  39229262 ttcaacattgttaaaaacgtaaacgttgaatctgcaagcaaactcacaacatccaaattaa-agcatacaacggaaaaatgcctacaaattatatgat 39229166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 5348466 - 5348529
Alignment:
Q  163 tgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatg 226  Q
    |||||| |||||  ||| |||||| ||||||| ||||||| | |||||||||||||||||||||    
T  5348466 tgcgaacaaactaacaacatccaagttaatagcatacaacggtaaaatgcctacaaataatatg 5348529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 19404609 - 19404696
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||||| | ||||| |||||| |||||| ||  |||||| |||||||  | |||| | |||| ||||||||||||||||||    
T  19404609 ctaaaaatgtaaaggatgaatctgcgaacaaactcacagcatccaagttaatagcgtgcaacggcaaaaagcctacaaataatatgat 19404696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 28044608 - 28044695
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| | |||| ||||||  || |||||| ||||||| ||||||| | |||||| ||| ||||||||||||    
T  28044608 ctaaaaacgtaaagggtgaatctacgaacaaactcataacatccaagttaatagcatacaacggcaaaatgtctaaaaataatatgat 28044695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 28407770 - 28407857
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||  |||| ||| ||| |||||| |||||| ||  |||||| ||||||| ||||||| | |||||| ||||||||||||||||    
T  28407770 ctaaaaacataaagggtaaatctgcgaacaaactcacagcatccaagttaatagcatacaacggcaaaatgtctacaaataatatgat 28407857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 39171442 - 39171529
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| ||| || ||||||  |  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  39171442 ctaaaaacgtaaagggtgaatctgcaaacaaactcatagcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 39171529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 48316664 - 48316751
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||  |||| ||||||| |||||| |||||| ||  | |||| ||||||| |||||||   |||||||||||||||||||||||    
T  48316664 ctaaaaacctaaagggtgaatctgcgaacaaactcacagcacccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 48316751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 433523 - 433601
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    ||||||| ||||| | ||||| |||||| |||||| ||| |||||| ||||||| ||| ||||| | ||||||||||||    
T  433523 ctaaaaacgtaaaggatgaatctgcgaacaaactcacaacatccaagttaatagcatataacagcataatgcctacaaa 433601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 9977055 - 9977149
Alignment:
Q  134 aacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||||| ||||| ||||||| || ||| ||| || ||| |||||| ||||||| |||||||   |||||| ||| ||||||||||||    
T  9977055 aacattgctaaaaacgtaaagggtgaatctgtgaaaaaattcacaacatccaagttaatagcatacaacgacaaaatgtctaaaaataatatgat 9977149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 28476496 - 28476378
Alignment:
Q  110 tacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaa 209  Q
    ||||||| | ||||||||||| |||| ||| ||||||| ||||||||||||| ||| || |||||| ||  |  ||| ||||||  ||   || | ||||    
T  28476496 tacatcagagataataacatgatcaatattgctaaaaacgtaaatggtgaatctgcaaacaaactcacagcactcaagttaataacattgcacggcaaaa 28476397  T
Q  210 tgcctacaaataatatgat 228  Q
    |||||||||||||||||||    
T  28476396 tgcctacaaataatatgat 28476378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 35133185 - 35133099
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||| | ||||||| |||||| |||||| ||  | |||| ||||||| ||||||| | |||||||||| ||||||||||||    
T  35133185 taaaaacgtatagggtgaatctgcgaacaaactcacatcacccaagttaatagcatacaacggcaaaatgcctagaaataatatgat 35133099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 35261526 - 35261464
Alignment:
Q  157 tgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    ||||| |||||| |||||| |||||||||| ||||||| ||||||| | | ||||||||||||    
T  35261526 tgaatctgcgaacaaactcacaatatccaagttaatagcatacaacggcataatgcctacaaa 35261464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 26610614 - 26610691
Alignment:
Q  123 ataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtataca 200  Q
    ||||||||||||||||   |||||| ||||| ||||||| |||||| |||||| || || | || |||||||||||||    
T  26610614 ataacatgttcaacatcgttaaaaacgtaaaaggtgaatctgcgaacaaactcacagtaccaaagttaatagtataca 26610691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 17773424 - 17773464
Alignment:
Q  188 ttaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||||||| ||||||| |||||||||||||||    
T  17773424 ttaatagcatacaacagtaaaatgcttacaaataatatgat 17773464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 25287085 - 25287125
Alignment:
Q  188 ttaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||||||| |||||| ||||||||||||||||    
T  25287085 ttaatagcatacaacagcaaaatggctacaaataatatgat 25287125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 26623608 - 26623728
Alignment:
Q  108 agtacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaa 207  Q
    |||| |||| ||| ||||||||||| |||||  || |||| ||||| ||||||| |||||| |||||| |||    ||| ||||||||||| |||   ||    
T  26623608 agtatatcagatacaataacatgtttaacatcgcttaaaacgtaaagggtgaatctgcgaacaaactcacaacgctcaagttaatagtatagaacgacaa 26623707  T
Q  208 aatgcctacaaataatatgat 228  Q
    |||||||| || |||||||||    
T  26623708 aatgcctaaaactaatatgat 26623728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 47590547 - 47590463
Alignment:
Q  144 aaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||| ||||| ||| ||| ||| || |||||| ||| | |||| |||||||  |||||| | |||||||||||||||||||||||    
T  47590547 aaaacgtaaagggtaaatctgcaaacaaactcacaacacccaagttaatagcttacaacggcaaaatgcctacaaataatatgat 47590463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 13546520 - 13546640
Alignment:
Q  108 agtacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaa 207  Q
    ||||||||| ||| |||||||||||||||||| ||||||| ||||| ||||| | || ||||||||||||||||   |||||||||| |||||||   ||    
T  13546520 agtacatcagatacaataacatgttcaacattactaaaaacgtaaagggtgattctgtgaataaactcgcaatacttaaattaatagcatacaacgacaa 13546619  T
Q  208 aatgcctacaaataatatgat 228  Q
    ||| |||||||||||||||||    
T  13546620 aatacctacaaataatatgat 13546640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 9380289 - 9380174
Alignment:
Q  113 atcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgc 212  Q
    ||||||||  |||||||| ||||||||  ||||||||||||||||||||||||||| |||||| ||| ||||||  |||||| |||||||   |||||||    
T  9380289 atcaaatactataacatgatcaacattgataaaaatgtaaatggtgaatatgcgaacaaactcacaacatccaagataatagaatacaacgacaaaatgc 9380190  T
Q  213 ctacaaataatatgat 228  Q
     |||||||||||||||    
T  9380189 atacaaataatatgat 9380174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 33053013 - 33053107
Alignment:
Q  134 aacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||||| ||||| |||||||||||||| |||||| ||  |||||| ||||||| ||||||| | |||||||||||||||||||||||    
T  33053013 aacattgctaaaaacgtaaagggtgaatatgcgaacaaactcacagcatccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 33053107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 12170706 - 12170619
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||||| |||||||||||||  |||||| ||  | |||| ||||||| ||||||||| |||||||||||||||||||||||    
T  12170706 ctaaaaatgtaaagggtgaatatgcgagcaaactcacagcacccaagttaatagcatacaacagcaaaatgcctacaaataatatgat 12170619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 23128856 - 23128769
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||||| ||||||| |||||| |||||| ||  | |||||||||||| ||||||| | |||||||||||||||||||||||    
T  23128856 ctaaaaatgtaaagggtgaatctgcgaacaaactcacagcacccaaattaatagcatacaacggcaaaatgcctacaaataatatgat 23128769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 7515054 - 7515141
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||  | |||| ||||||| ||||| |||||||||||||||||||||||||||    
T  7515054 ctaaaaacgtaaagggtgaatttgcgaacaaactcacagaaaccaagttaatagcatacagcagaaaaatgcctacaaataatatgat 7515141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 20226089 - 20226002
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||  |||||| ||||| |||||| |||||| ||||| |||| ||||||| |||||||   |||||||||||||||||||||||    
T  20226089 ctaaaaacataaatgatgaatttgcgaacaaactcacaatacccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 20226002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 22120073 - 22119986
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||  |||||| ||||| |||||| |||||| ||||| |||| ||||||| |||||||   |||||||||||||||||||||||    
T  22120073 ctaaaaacataaatgatgaatttgcgaacaaactcacaatacccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 22119986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 67846 - 67940
Alignment:
Q  134 aacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||||| ||||| ||||||| |||||| |||||| ||  | |||| ||||||| ||||||| | |||||||||| ||||||||||||    
T  67846 aacattgctaaaaacgtaaagggtgaatctgcgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctataaataatatgat 67940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 9341496 - 9341590
Alignment:
Q  134 aacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||||| ||||| ||||||| |||||| |||||| ||| | |||| ||||||| |||||||   |||||||||||||| ||||||||    
T  9341496 aacattgctaaaaacgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacgacaaaatgcctacaaacaatatgat 9341590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 30776920 - 30776814
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| ||  ||||||| ||||| ||||||| |||||| |||||| ||| | |||| ||||||| || | || | ||||||||||||||||    
T  30776920 aataacatgatcaatatcgctaaaaacgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcattccacggcaaaatgcctacaaata 30776821  T
Q  222 atatgat 228  Q
    |||||||    
T  30776820 atatgat 30776814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 14802050 - 14801978
Alignment:
Q  156 gtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| |||||| |||||| ||  |||||| ||||||| ||||||| | |||||||||||||||||||||||    
T  14802050 gtgaatctgcgaacaaactcacagcatccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 14801978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 21426538 - 21426622
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatat 225  Q
    ||||||| ||||| |||||||||||||| |||||| ||  | |||| ||||||| ||||||| | |||||| |||||||||||||    
T  21426538 ctaaaaacgtaaacggtgaatatgcgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgtctacaaataatat 21426622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 31297067 - 31296971
Alignment:
Q  132 tcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||  ||||||| ||||| |||||| ||||||| ||||||  |  |||||||||||||| |||||||   |||||||||||||| ||||||||    
T  31297067 tcaacatcgctaaaaacgtaaagggtgaaaatgcgaacaaactcaaatcatccaaattaatagcatacaacgacaaaatgcctacaaacaatatgat 31296971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 3913426 - 3913513
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| |||| || |||||| |||||| ||| | |||| ||||||| ||||||  | |||||||||||||||||||||||    
T  3913426 ctaaaaacgtaaagggtgcatctgcgaacaaactcacaacacccaagttaatagcatacaatggcaaaatgcctacaaataatatgat 3913513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 29255298 - 29255385
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||  ||||||| || ||| |||||| ||| | |||| ||||||| |||||||||  ||||||||||||||||||||||    
T  29255298 ctaaaaacgtaatgggtgaatctgtgaacaaactcacaacacccaagttaatagcatacaacagtgaaatgcctacaaataatatgat 29255385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 34018798 - 34018711
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||||||| ||| |||  | |||||| ||| | ||||  ||||| |||||||||| |||||||||||||||||||||||    
T  34018798 ctaaaaacgtaaatggtaaatctgcagacaaactcacaacacccaagataataatatacaacagtaaaatgcctacaaataatatgat 34018711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 606441 - 606355
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||| ||||||| |||||| |||||| ||  | |||| ||||||| ||||||  | |||||||||||||||||||||||    
T  606441 taaaaacgtaaagggtgaatctgcgaacaaactcacagcacccaagttaatagcatacaatggcaaaatgcctacaaataatatgat 606355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 14174916 - 14175010
Alignment:
Q  134 aacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||||| ||||| ||||||| |||||| |||||| ||  |  ||| |||| || ||| ||| |||||||||||||||||||||||||    
T  14174916 aacattgctaaaaacgtaaaaggtgaatctgcgaacaaactcacatcactcaagttaacagcataaaacggaaaaatgcctacaaataatatgat 14175010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 14179452 - 14179546
Alignment:
Q  134 aacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||||| ||||| ||||||| |||||| |||||| ||  |  ||| |||| || ||| ||| |||||||||||||||||||||||||    
T  14179452 aacattgctaaaaacgtaaaaggtgaatctgcgaacaaactcacatcactcaagttaacagcataaaacggaaaaatgcctacaaataatatgat 14179546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 30608368 - 30608454
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||| | ||||| ||| || || ||| ||| |||||| ||||||| ||||||| | |||||||||||||||||||||||    
T  30608368 taaaaacgtaaaggatgaatttgcaaacaatctcacaacatccaagttaatagcatacaacggtaaaatgcctacaaataatatgat 30608454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 546253 - 546182
Alignment:
Q  157 tgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| |||||| |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  546253 tgaatctgcgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 546182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 6957412 - 6957345
Alignment:
Q  108 agtacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactc 175  Q
    ||||||||||||| ||||| |||||||||||  ||||||| ||||| ||||||| || ||| ||||||    
T  6957412 agtacatcaaatacaataatatgttcaacatcgctaaaaacgtaaagggtgaatctgtgaacaaactc 6957345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 7976030 - 7976117
Alignment:
Q  132 tcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    |||||||| |||||||  |||| | |||||||||||| |||||| ||| | | || ||||||| ||||||| | ||||||||||||||    
T  7976030 tcaacattgctaaaaacataaaggatgaatatgcgaacaaactcacaacacctaagttaatagcatacaacggcaaaatgcctacaaa 7976117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 26588296 - 26588411
Alignment:
Q  113 atcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgc 212  Q
    |||| ||| ||||||||| |||||||  |||||||  |||| ||||||  ||| || |||||| | | |||||| |||| || ||||||||| ||||||     
T  26588296 atcatatacaataacatgatcaacatcgctaaaaacttaaagggtgaagctgcaaacaaactcacgacatccaagttaagagcatacaacagcaaaatgt 26588395  T
Q  213 ctacaaataatatgat 228  Q
    ||| ||||||||||||    
T  26588396 ctaaaaataatatgat 26588411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 30894836 - 30894750
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| | ||||| ||| ||||||||| ||  |||||| || |||| ||||||||| |||||| ||||||||||||||||    
T  30894836 ctaaaaacgtaaaggatgaatctgc-aataaactcacagcatccaagttgatagcatacaacagcaaaatgactacaaataatatgat 30894750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 1933545 - 1933631
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||| | ||||| |||||| ||||||  | || | |||||||||| ||||||||||||||||| || | ||||||||||    
T  1933545 taaaaacgtaaaggatgaatctgcgaacaaactcatagtaccgaaattaatagcatacaacagaaaaatgcatatagataatatgat 1933631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 17334998 - 17334920
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    ||||||| ||||||| ||||| |||||| |||||| ||| |||||| ||||||| ||| ||| | | ||||||||||||    
T  17334998 ctaaaaacgtaaatgatgaatctgcgaacaaactcacaacatccaagttaatagcatataacggcataatgcctacaaa 17334920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 14846115 - 14846160
Alignment:
Q  183 ccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||| ||||||| ||| ||||| |||||||||||||||||||||||    
T  14846115 ccaagttaatagcataaaacagcaaaatgcctacaaataatatgat 14846160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 32134468 - 32134411
Alignment:
Q  106 aaagtacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatat 163  Q
    ||||||||||||||| ||| |||| ||||||||  ||||||||||||||  |||||||    
T  32134468 aaagtacatcaaatacaatcacatattcaacatcactaaaaatgtaaataatgaatat 32134411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 32327072 - 32327156
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| |||||||||||||| |||||| ||  | |||| ||||||| ||   || | |||||||||||||||||||||||    
T  32327072 ctaaaaacgtaaagggtgaatatgcgaacaaactcacagcacccaagttaatagcat---acggcaaaatgcctacaaataatatgat 32327156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 127905 - 127820
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| |||||||||| ||| |||||| ||  | |||| ||||||| |  |||| | |||||||||||||||||||||||    
T  127905 ctaaaaacgtaaaaggtgaatatgtgaacaaactcacagcaaccaagttaatagca--caacggcaaaatgcctacaaataatatgat 127820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 32060114 - 32060030
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatat 225  Q
    ||||||||||||| ||| ||| |||||| |||||  ||| |||||| ||||||| ||| ||    ||||||||||||||||||||    
T  32060114 ctaaaaatgtaaagggtaaatctgcgaacaaacttacaacatccaatttaatagcataaaatgacaaaatgcctacaaataatat 32060030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 45415798 - 45415711
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| |||||||||||||| |||||| ||| | ||||||||||| |||||||| | |||||||||||||||||||||||    
T  45415798 ctaaaaacgtaaagggtgaatatgcgaacaaactcacaacacccaaattaatattatacaacggcaaaatgcctacaaataatatgat 45415711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 14489540 - 14489425
Alignment:
Q  113 atcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgc 212  Q
    |||||||| ||| ||||| | |||||  ||||||| ||||| ||||||||||| ||||||||| ||||| |||| ||||||  ||||||||  ||||| |    
T  14489540 atcaaatacaatgacatgattaacatcgctaaaaacgtaaagggtgaatatgctaataaactctcaatacccaagttaataacatacaacaacaaaatac 14489441  T
Q  213 ctacaaataatatgat 228  Q
    ||||||||||||||||    
T  14489440 ctacaaataatatgat 14489425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 36775543 - 36775649
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| ||  ||||||| ||| | ||||||| |||||| |||||| ||| |||||| ||||||| ||||||| | ||||||||||||||||    
T  36775543 aataacatgatcaatatcgctaaaaacgtatagggtgaatctgcgaacaaactcacaacatccaagttaatagcatacaacggcaaaatgcctacaaata 36775642  T
Q  222 atatgat 228  Q
    |||||||    
T  36775643 atatgat 36775649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 48750444 - 48750338
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| ||  ||||||| ||| | |||||||||||||| |||||| ||| | |||| ||||||| ||||||| | ||||||||||||||||    
T  48750444 aataacatgatcaatatcgctaaaaacgtatagggtgaatatgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaata 48750345  T
Q  222 atatgat 228  Q
    |||||||    
T  48750344 atatgat 48750338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 5601015 - 5600924
Alignment:
Q  131 ttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataa 222  Q
    ||||||||| ||||||||||||||  ||||| |||||| |||||| |||||||||||| ||||  |||||||   |||||||||||||||||    
T  5601015 ttcaacattgctaaaaatgtaaataatgaatctgcgaacaaactcacaatatccaaataaataacatacaacgataaaatgcctacaaataa 5600924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 7337515 - 7337602
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||| |||| ||||||| |||||| |||||| ||| | |||| ||||||| || |||||| |||||||||||||||||||||||    
T  7337515 ctaaaaatataaagggtgaatctgcgaacaaactcacaacagccaagttaatagcatgcaacagcaaaatgcctacaaataatatgat 7337602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 14872871 - 14872792
Alignment:
Q  149 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| |||||||||||||| |||||| ||  |||||| ||||||| ||||||| | |||||||||||||||||||||||    
T  14872871 gtaaagggtgaatatgcgaacaaactcacagcatccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 14872792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 18939591 - 18939472
Alignment:
Q  110 tacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaac-agaaaa 208  Q
    ||||||| ||| |||||||||||||| |||  ||| || ||||||||||||| |||||| ||||||  | ||||||| ||||||| ||||||| | ||||    
T  18939591 tacatcagatacaataacatgttcaatattgttaagaacgtaaatggtgaatctgcgaacaaactcaaattatccaagttaatagcatacaacgacaaaa 18939492  T
Q  209 atgcctacaaataatatgat 228  Q
    |||||| |||||||| ||||    
T  18939491 atgcctgcaaataatttgat 18939472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 9341963 - 9341879
Alignment:
Q  144 aaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||| ||||| ||||||| |  |||||||||| |||||| ||| ||||||||||||||||  ||||| |||||||||||||||||    
T  9341963 aaaacgtaaaaggtgaatctaagaataaactcacaatattcaagttaatagtatacaacaacaaaatacctacaaataatatgat 9341879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 19061133 - 19061062
Alignment:
Q  157 tgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| |||||| |||||| ||| |||||| ||||||| ||||||| | |||||||||||||||||||||||    
T  19061133 tgaatgtgcgaacaaactcacaacatccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 19061062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 19596312 - 19596399
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| ||||||| |  |||||| ||||||| ||| ||| | |||||||||||||||||||||||    
T  19596312 ctaaaaacgtaaaaggtgaatctgcgaacaaactcgtagcatccaagttaatagcataaaacggcaaaatgcctacaaataatatgat 19596399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 24583386 - 24583299
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||||| | ||||| |||||| |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  24583386 ctaaaaatgtaaaggatgaatctgcgaacaaactcacatcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 24583299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 31919229 - 31919142
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| | ||||| |||||| |||||||||| |||||| ||||||| |||||||   |||||| ||||||||||||||||    
T  31919229 ctaaaaacgtaaaggatgaatctgcgaacaaactcgcaacatccaagttaatagcatacaacgacaaaatgtctacaaataatatgat 31919142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 35484243 - 35484330
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||||| || |||| |||||| |||||| ||| | |||| ||||||| ||||||| | ||||||| |||||||||||||||    
T  35484243 ctaaaaatgtaaagggcgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcttacaaataatatgat 35484330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 13144665 - 13144751
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||||||| ||||||| |||||| |||||| ||| |||||| ||||||| ||| ||  | |||||||||||||||| ||||||    
T  13144665 taaaaatgtaaagggtgaatctgcgaacaaactcacaacatccaagttaatagcataaaatggcaaaatgcctacaaatattatgat 13144751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 34412925 - 34413031
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| ||  ||||||| ||| | ||||||| |||||| |||||| ||| | |||| ||||||  ||||||| | ||||||||||||||||    
T  34412925 aataacatgatcaatatcgctaaaaacgtatagggtgaatctgcgaacaaactcacaacacccaagttaataacatacaaccgcaaaatgcctacaaata 34413024  T
Q  222 atatgat 228  Q
    |||||||    
T  34413025 atatgat 34413031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 37720004 - 37720088
Alignment:
Q  144 aaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||| ||||| ||||||| ||| || |||||| ||| | |||| ||||||| || | ||||||||||||||||||||||||||||    
T  37720004 aaaacgtaaaaggtgaatttgcaaacaaactcacaacacccaagttaatagcattccacagaaaaatgcctacaaataatatgat 37720088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 10776313 - 10776400
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||  |||||| |||||| ||  | |||| ||||||| ||||||||| ||||||||||||||||| |||||    
T  10776313 ctaaaaacgtaaagggtgaaattgcgaacaaactcacagcacccaagttaatagaatacaacagcaaaatgcctacaaataaaatgat 10776400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 34529298 - 34529227
Alignment:
Q  157 tgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| |||||| |||||| ||  | |||| |||||||||||||||| ||||||||||||||||||| ||||    
T  34529298 tgaatctgcgaacaaactcacatcacccaagttaatagtatacaacaaaaaaatgcctacaaataatgtgat 34529227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 34878130 - 34878217
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| || ||| |||||| ||| | |||| ||||||| ||| ||| | |||||||||||||||||||||||    
T  34878130 ctaaaaacgtaaaaggtgaatctgtgaacaaactcacaacacccaagttaatagcataaaacggcaaaatgcctacaaataatatgat 34878217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 49627153 - 49627066
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| | ||||| |||||| |||||| ||| | |||||||||||| ||||||| | |||||| |||||||||| |||||    
T  49627153 ctaaaaacgtaaaggatgaatctgcgaacaaactcacaacacccaaattaatagcatacaacggcaaaatgtctacaaataagatgat 49627066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 5984067 - 5983989
Alignment:
Q  150 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||| |||||||||||||| |||||| ||  | |||| ||||||| |||||||   |||||||||||||||||||||||    
T  5984067 taaagggtgaatatgcgaacaaactcacatcacccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 5983989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 15431511 - 15431605
Alignment:
Q  134 aacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||||| ||||| | ||||| |||||| |||||| ||| |||||| | ||||| |||||||   |||||| ||||||||||||||||    
T  15431511 aacattgctaaaaacgtaaaggatgaatctgcgaacaaactcacaacatccaagtgaatagcatacaacgataaaatgtctacaaataatatgat 15431605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 21947471 - 21947557
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||||||| ||| ||| |||||| |||||| ||  | |||| ||||||  ||||||| | |||||||||||||||||||||||    
T  21947471 taaaaatgtaaagggtaaatctgcgaacaaactcacatcacccaagttaataaaatacaacggcaaaatgcctacaaataatatgat 21947557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 30712121 - 30712239
Alignment:
Q  109 gtacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaa 208  Q
    |||||||| ||| |||||||||||||| ||  ||||||| |||||| |||||| || | | ||| || || ||  ||| ||||||| ||| ||||  |||    
T  30712121 gtacatcatatacaataacatgttcaatatcgctaaaaacgtaaatagtgaatctgaggacaaattcacattagtcaagttaatagcatagaacaacaaa 30712220  T
Q  209 atgcctacaaataatatga 227  Q
    |||||||||||||||||||    
T  30712221 atgcctacaaataatatga 30712239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 31317995 - 31317889
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    |||| ||||||||||||   |||||| ||||| ||||||| |||||| |||||| ||  | |||| ||||||| || ||||   ||||||||||||||||    
T  31317995 aatatcatgttcaacatcgttaaaaacgtaaagggtgaatttgcgaacaaactcacatcacccaagttaataggatgcaacgataaaatgcctacaaata 31317896  T
Q  222 atatgat 228  Q
    |||||||    
T  31317895 atatgat 31317889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 4413307 - 4413267
Alignment:
Q  188 ttaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  4413307 ttaatagcatacaacagcaaaatgcctacaaataatatgat 4413267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 47133152 - 47133056
Alignment:
Q  132 tcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||  ||||||| ||||| | | ||| |||||| |||||| ||| |||||| ||||||| ||| ||| | |||||||||||||| ||||||||    
T  47133152 tcaacatcgctaaaaacgtaaaggataaatctgcgaacaaactcacaacatccaagttaatagcatataacggcaaaatgcctacaaaaaatatgat 47133056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 11462334 - 11462421
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||||||||||| | |||| |||||| ||  | |||| ||||||| |||||||   ||||| |||||||||||||||||    
T  11462334 ctaaaaacgtaaatggtgaatctacgaacaaactcacagcacccaagttaatagcatacaacgacaaaattcctacaaataatatgat 11462421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 16989611 - 16989524
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||||||| ||| ||| || |||||| ||  | |||| ||||||| ||| ||| | |||||||||||||||||||||||    
T  16989611 ctaaaaacgtaaatggtaaatctgcaaacaaactcacagcacccaagttaatagcataaaacggcaaaatgcctacaaataatatgat 16989524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 21687610 - 21687531
Alignment:
Q  149 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| ||||||| ||| || |||||| ||| | |||||||||||| ||| |||   |||||||||||||||||||||||    
T  21687610 gtaaaaggtgaatctgctaacaaactcacaacacccaaattaatagcataaaacgagaaaatgcctacaaataatatgat 21687531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 44543512 - 44543425
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| | ||||| |||||| |||||| ||  | |||| ||||||| ||| ||| | |||||||||||||||||||||||    
T  44543512 ctaaaaacgtaaaggatgaatctgcgaacaaactcacagcacccaagttaatagcataaaacggcaaaatgcctacaaataatatgat 44543425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 44915879 - 44915792
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| | |||||||||||| |||||| ||  | |||| |  |||| ||||||| | |||||||||||||||||||||||    
T  44915879 ctaaaaacgtaaaggatgaatatgcgaacaaactcacatcacccaagtcgatagcatacaacggcaaaatgcctacaaataatatgat 44915792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 6017769 - 6017683
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||  ||||| ||||| ||| |||||| || ||| |||||| ||||||||||| ||||  ||||||| || ||||||||||||    
T  6017769 taaaaataaaaatgatgaatctgcaaataaattcacaacatccaagttaatagtatataacaataaaatgcatataaataatatgat 6017683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 6217704 - 6217762
Alignment:
Q  170 aaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| || |||||| ||||||| ||||||| | ||||| |||||||||||||||||    
T  6217704 aaactcgaaacatccaagttaatagcatacaacggtaaaatacctacaaataatatgat 6217762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 19052156 - 19052253
Alignment:
Q  131 ttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacag-aaaaatgcctacaaataatatgat 228  Q
    ||||||||  |||||||| |||||| | ||| | ||||||||||| |||  | ||||||||||| ||||||| | |||||||| |||||||||||||||    
T  19052156 ttcaacatcgctaaaaatataaatgataaatttacgaataaactcacaaccttcaaattaatag-atacaacggcaaaaatgcatacaaataatatgat 19052253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 19715727 - 19715805
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    ||||||| ||||| | ||||| ||||||||||||| ||  |||||| ||||||| ||| ||||| | ||||||||||||    
T  19715727 ctaaaaacgtaaaggatgaatctgcgaataaactcacagcatccaagttaatagcatataacagcataatgcctacaaa 19715805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 28053570 - 28053656
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||| || ||||| ||| |||||||||  || |||||| | || |  ||||||||  |||||||||||||||||||||||    
T  28053570 taaaaatgtaagtgatgaatttgcaaataaactcataacatccaagtaaagatcatacaacaataaaatgcctacaaataatatgat 28053656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 40880845 - 40880923
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    ||||||| ||||||| || || |||||| |||||| ||| |||||| ||||||| ||| ||||| | ||||||||||||    
T  40880845 ctaaaaacgtaaatgatgcatctgcgaacaaactcacaacatccaagttaatagcatataacagcataatgcctacaaa 40880923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 45425898 - 45425976
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    ||||||| ||||||| ||||| ||||||||||||| ||  |||||| ||||||| ||| ||| | | ||||||||||||    
T  45425898 ctaaaaacgtaaatgatgaatctgcgaataaactcacagcatccaagttaatagcatataacggtataatgcctacaaa 45425976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 48217686 - 48217608
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    ||||||||||||| | ||||| |||||| |||||| ||| |||||| ||||||| ||| ||||  | ||||||||||||    
T  48217686 ctaaaaatgtaaaggatgaatttgcgaacaaactcacaacatccaagttaatagcatataacaacataatgcctacaaa 48217608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 16162066 - 16161981
Alignment:
Q  143 aaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| ||||| ||||||| |||||| |||||| ||| | | || ||||||| || | || | |||||||||||||||||||||||    
T  16162066 aaaaacgtaaagggtgaatctgcgaacaaactcacaacacctaagttaatagcattccacggcaaaatgcctacaaataatatgat 16161981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 39927376 - 39927465
Alignment:
Q  130 gttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    |||||||||  |||||||  |||| | |||||||||||| |||||| ||| |||||||||||||  ||| ||| | | ||||||||||||    
T  39927376 gttcaacatcgctaaaaacataaaggatgaatatgcgaacaaactcacaacatccaaattaataagatataacggcataatgcctacaaa 39927465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 225
Target Start/End: Complemental strand, 45789809 - 45789697
Alignment:
Q  112 catcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatg 211  Q
    ||||| ||| |||||||||||||||||  ||||||||||||| ||||| | || ||| |||| | ||| | |||| ||||||| ||||||    |||||     
T  45789809 catcagatacaataacatgttcaacatcgctaaaaatgtaaagggtgattttgagaacaaac-cacaacacccaagttaatagcatacaatgacaaaatt 45789711  T
Q  212 cctacaaataatat 225  Q
    ||||||||||||||    
T  45789710 cctacaaataatat 45789697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 18569133 - 18569221
Alignment:
Q  131 ttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    ||||||||| |||||||  ||||   ||||| ||||||||||||| ||| |||||||||||||| ||| |||   | ||||||||||||    
T  18569133 ttcaacattgctaaaaacataaagcttgaatttgcgaataaactcacaacatccaaattaatagcatataacgacataatgcctacaaa 18569221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 5047027 - 5046905
Alignment:
Q  106 aaagtacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacaga 205  Q
    ||||||||||||||| |||||||||||||||||| |||||||| |||||| | ||| | |||| |||||| ||  | |||| ||||||  |||||||       
T  5047027 aaagtacatcaaatacaataacatgttcaacattactaaaaatataaatgataaatcttcgaacaaactcacatcacccaagttaataacatacaacgat 5046928  T
Q  206 aaaatgcctacaaataatatgat 228  Q
    |||||||||||||||||||||||    
T  5046927 aaaatgcctacaaataatatgat 5046905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 31013451 - 31013545
Alignment:
Q  134 aacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||||| ||||| ||||||| |||||| |||||| ||| | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  31013451 aacattgctaaaaacgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 31013545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 43833815 - 43833933
Alignment:
Q  110 tacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaa 209  Q
    ||||||||| | ||||||||| |||| ||  ||||||| ||||||||||||| ||| || |||||| ||  | |||| ||||||| ||||||| | ||||    
T  43833815 tacatcaaagacaataacatgatcaatatcgctaaaaaagtaaatggtgaatctgcaaacaaactcacagcacccaagttaatagcatacaacggcaaaa 43833914  T
Q  210 tgcctacaaataatatgat 228  Q
    |||||||||||||||||||    
T  43833915 tgcctacaaataatatgat 43833933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 45445662 - 45445748
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||| |||||||||||||| |||||| ||| |||||| ||||||| ||| ||||  |||||||||||||||||||||||    
T  45445662 taaaaacgtaaaaggtgaatatgcgaacaaactcacaacatccaagttaatagcataaaacaacaaaatgcctacaaataatatgat 45445748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 23230882 - 23230795
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| |||||||||||||| |||||| |||||| ||| | |||| ||||||| |||||||   |||||||||||||||||||||||    
T  23230882 ctaaaagtgtaaatggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 23230795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 41060085 - 41060200
Alignment:
Q  113 atcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgc 212  Q
    |||| ||| |||||||||||||||||  ||||||| ||||| | ||||| |||||| |||||| ||  | ||||||| |||| ||||||||  ||||||     
T  41060085 atcagatacaataacatgttcaacatcactaaaaacgtaaaggatgaatctgcgaacaaactcacatcacccaaattgatagcatacaacaacaaaatgg 41060184  T
Q  213 ctacaaataatatgat 228  Q
    ||||||||||||||||    
T  41060185 ctacaaataatatgat 41060200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 37971521 - 37971435
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||||||| ||||||| |||||| |||||| ||| | |||| ||||||| ||||||| | |||||||||||||||||| ||||    
T  37971521 taaaaatgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatgtgat 37971435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 41896775 - 41896669
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| ||| ||||||| ||| | ||||||| |||||| |||||| ||| | |||| ||||||| |||||||   ||||||||||||||||    
T  41896775 aataacatgatcaatattgctaaaaacgtatagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacgacaaaatgcctacaaata 41896676  T
Q  222 atatgat 228  Q
    |||||||    
T  41896675 atatgat 41896669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 7198045 - 7198132
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| ||||||||||||| ||| | |||||||||||| |||||||   ||||| ||| |||||||||||||    
T  7198045 ctaaaaacgtaaagggtgaatctgcgaataaactcacaacacccaaattaatagcatacaacgacaaaattcctgcaaataatatgat 7198132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 7883091 - 7883178
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  7883091 ctaaaaacgtaaagggtgaatctgcgaacaaactcacagcacccaagttaataggatacaacggcaaaatgcctacaaataatatgat 7883178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 16928607 - 16928694
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||| | |||| ||||||| ||||||  | |||||||||||||||||||||||    
T  16928607 ctaaaaacgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaatggcaaaatgcctacaaataatatgat 16928694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 14585947 - 14585829
Alignment:
Q  110 tacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaa 209  Q
    ||||||| | ||||||||||| |||| ||  ||||||| ||| | ||||||| |||||| |||||| ||  | |||| ||||||| ||||||| | ||||    
T  14585947 tacatcagagataataacatgatcaatatcgctaaaaacgtatagggtgaatctgcgaacaaactcacagcacccaagttaatagcatacaacggcaaaa 14585848  T
Q  210 tgcctacaaataatatgat 228  Q
     ||||||||||||||||||    
T  14585847 cgcctacaaataatatgat 14585829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 25190908 - 25191002
Alignment:
Q  134 aacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||||  ||||| ||||||| |||||| |||||| ||  | |||| ||||||| ||| || ||||||||||||||||||||||||||    
T  25190908 aacattgctaaaatcgtaaaaggtgaatctgcgaacaaactcacagcacccaagttaatagcataaaatagaaaaatgcctacaaataatatgat 25191002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 3673680 - 3673593
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||  ||| || |||||| ||  |||||| ||||||| ||||||| | |||||||||||||||||||||||    
T  3673680 ctaaaaacgtaaagggtgaaactgcaaacaaactcacagcatccaagttaataggatacaacggcaaaatgcctacaaataatatgat 3673593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 10377928 - 10377841
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| || |||||||||| |||||  |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  10377928 ctaaaaacgtgaatggtgaatctgcgagcaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 10377841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 27110315 - 27110402
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||| ||| | |||||||||||| |||||| ||| | |||| ||||||| |||||||   |||||| ||||||||||||||||    
T  27110315 ctaaaaatgcaaaagatgaatatgcgaacaaactcacaacacccaagttaatagcatacaacgataaaatgtctacaaataatatgat 27110402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 30568171 - 30568258
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||| | |||| ||||||| ||| ||| | ||||||||||||||||| |||||    
T  30568171 ctaaaaacgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcataaaacggcaaaatgcctacaaataacatgat 30568258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 33896338 - 33896260
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    ||||||||||||| | ||||| |||||| |||||| ||| |||||| ||||||| ||| ||||| | ||||||||||||    
T  33896338 ctaaaaatgtaaaggatgaatctgcgaaaaaactcacaacatccaagttaatagcatataacagcataatgcctacaaa 33896260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 26468969 - 26469034
Alignment:
Q  110 tacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactc 175  Q
    ||||||| ||||||||||||| | |||||| ||||||| ||||||||||||| ||  |||||||||    
T  26468969 tacatcatatataataacatgattaacattgctaaaaacgtaaatggtgaatctgtaaataaactc 26469034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 17693463 - 17693551
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacag-aaaaatgcctacaaataatatgat 228  Q
    |||||||||||||  |||||| | |||  |||||| ||| |||||| ||||||  ||||||||  ||||||||||||||||||||||||    
T  17693463 ctaaaaatgtaaagagtgaatctacgaccaaactcacaacatccaagttaataacatacaacaacaaaaatgcctacaaataatatgat 17693551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 15344547 - 15344460
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| | ||||| |||||| |||||| ||  | |||| ||||||| |||||||   |||||||||||||||||||||||    
T  15344547 ctaaaaacgtaaaggatgaatctgcgaacaaactcacagcacccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 15344460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 15433612 - 15433525
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| | ||||| |||||| |||||| ||  | |||| ||||||| |||||||   |||||||||||||||||||||||    
T  15433612 ctaaaaacgtaaaggatgaatctgcgaacaaactcacagcacccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 15433525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 15524916 - 15524829
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| | ||||| |||||| |||||| ||  | |||| ||||||| |||||||   |||||||||||||||||||||||    
T  15524916 ctaaaaacgtaaaggatgaatctgcgaacaaactcacagcacccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 15524829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 2656122 - 2656044
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    ||||||| ||||||| ||||| |||||| |||||| ||  |||||| ||||||| ||| ||||| | ||||||||||||    
T  2656122 ctaaaaacgtaaatgatgaatttgcgaacaaactcacagcatccaagttaatagcatataacagcataatgcctacaaa 2656044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 12184507 - 12184441
Alignment:
Q  162 atgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| |||||| ||  |||||| | ||||| ||||||||| ||||| |||||||||||||||||    
T  12184507 atgcgaagaaactcacatcatccaagtcaatagcatacaacagcaaaatacctacaaataatatgat 12184441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 12428935 - 12428869
Alignment:
Q  162 atgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| |||||| ||  |||||| | ||||| ||||||||| ||||| |||||||||||||||||    
T  12428935 atgcgaagaaactcacatcatccaagtcaatagcatacaacagcaaaatacctacaaataatatgat 12428869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 29617141 - 29617211
Alignment:
Q  158 gaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||| |||||| |||||| ||| ||  || ||||||| ||||||||  |||||||||||||||||||||||    
T  29617141 gaatctgcgaacaaactcacaacatttaagttaatagcatacaacaacaaaatgcctacaaataatatgat 29617211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 42046479 - 42046373
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| ||  ||||||| ||| | ||||||| |||||| |||||| ||| | |||| ||||||| |||| |    ||||||||||||||||    
T  42046479 aataacatgatcaatatcgctaaaaacgtatagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacgatgtcaaaatgcctacaaata 42046380  T
Q  222 atatgat 228  Q
    |||||||    
T  42046379 atatgat 42046373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 18890563 - 18890636
Alignment:
Q  155 ggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| |||||| |||||| ||  | |||| ||||||| |||||||   |||||||||||||||||||||||    
T  18890563 ggtgaatctgcgaacaaactcacagcacccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 18890636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 10832154 - 10832218
Alignment:
Q  157 tgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    |||||||||||| | |||| |||||| ||||||||||| |||||||   || |||||||||||||    
T  10832154 tgaatatgcgaacatactcacaatattcaaattaatagcatacaacgataagatgcctacaaata 10832218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 20553138 - 20553178
Alignment:
Q  188 ttaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||||| | |||||||||||||||||||||||    
T  20553138 ttaatagcatacaacggcaaaatgcctacaaataatatgat 20553178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 33347362 - 33347458
Alignment:
Q  132 tcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||  ||||||| ||||| ||||||| |||||| ||||||  || | | || ||||||| ||||||    |||||||||||||||||||||||    
T  33347362 tcaacatcgctaaaaaggtaaaaggtgaatctgcgaacaaactcataacacctaatttaatagcatacaatgacaaaatgcctacaaataatatgat 33347458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 39657650 - 39657606
Alignment:
Q  184 caaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| |||| ||||||| | |||||||||||||||||||||||    
T  39657650 caaattgatagaatacaacggcaaaatgcctacaaataatatgat 39657606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 7986 - 7865
Alignment:
Q  108 agtacatcaaatataataacatgttcaacattcctaaaaatgta-aatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaa 206  Q
    ||||||||||||| |||||| |||| |||||| ||||||| ||| || |||||||||||||| |||||| ||| | |||| ||||||  |||||| || |    
T  7986 agtacatcaaatacaataacttgtttaacattgctaaaaacgtacaagggtgaatatgcgaacaaactcacaacacccaagttaataacatacaatagca 7887  T
Q  207 aaatgcctacaaataatatgat 228  Q
    |||| |||||||||||||||||    
T  7886 aaatccctacaaataatatgat 7865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 14211463 - 14211376
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||| | ||||||| |||||| |||||| ||| | |||| ||||||| |||||||||||||||||||||||||||||||||    
T  14211463 ctaaaaacgtatagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacagaaaaatgcctacaaataatatgat 14211376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 2979139 - 2979245
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| ||  ||||||||||| | ||||||| |||||| |||||| ||| |||||| ||||||| ||||||| | | ||||||||||||||    
T  2979139 aataacatgatcaatatcgctaaaaatgtatagggtgaatctgcgaacaaactcacaacatccaagttaatagcatacaacggcacaatgcctacaaata 2979238  T
Q  222 atatgat 228  Q
    |||||||    
T  2979239 atatgat 2979245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 31391614 - 31391692
Alignment:
Q  150 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||| ||||||| |||||| |||||| ||| |||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  31391614 taaagggtgaatttgcgaacaaactcacaacatccaagttaatagcatacaacagaaaaatgcctacatataatatgat 31391692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 9113577 - 9113664
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| ||||||  || | |||| ||||||| ||||||| |||||||||||||||||||||||||    
T  9113577 ctaaaaacgtaaagggtgaatctgcgaacaaactcagaacacccaagttaatagcatacaacggaaaaatgcctacaaataatatgat 9113664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 13422169 - 13422082
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| | |||||||||||| |||||| ||| |||||| ||||||| ||| ||| |||||||||||||| ||||||||||    
T  13422169 ctaaaaacgtaaaggatgaatatgcgaacaaactcacaacatccaagttaatagcataaaacggaaaaatgcctacatataatatgat 13422082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 38598033 - 38597946
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||| | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  38598033 ctaaaaacgtaaagggtgaatttgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 38597946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 19121179 - 19121061
Alignment:
Q  110 tacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaa 209  Q
    ||||||| ||| |||||||||| ||||||  || |||| ||||| ||||||| |||||| |||||| ||  |||||||||||||  |||||| || ||||    
T  19121179 tacatcagatacaataacatgtccaacatctctgaaaacgtaaagggtgaatctgcgaacaaactcacatcatccaaattaatatcatacaagagcaaaa 19121080  T
Q  210 tgcctacaaataatatgat 228  Q
     | ||||||||||||||||    
T  19121079 cgtctacaaataatatgat 19121061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 28540727 - 28540845
Alignment:
Q  110 tacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaa 209  Q
    ||||||||| | ||||||||| |||| ||  ||||||| ||| | ||||||| |||||| |||||| ||  | |||| ||||||| ||||||| ||||||    
T  28540727 tacatcaaagacaataacatgatcaatatcgctaaaaacgtatagggtgaatctgcgaacaaactcacagcacccaagttaatagcatacaacggaaaaa 28540826  T
Q  210 tgcctacaaataatatgat 228  Q
    || ||||||||||||||||    
T  28540827 tgtctacaaataatatgat 28540845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 10722997 - 10722910
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||||||||||||| | |||| |||||| ||| |  ||| ||||||  ||||| | |||||||||||||||||||||||||    
T  10722997 ctaaaaatgtaaatggtgaatctacgaacaaactcacaacactcaagttaataacatacagcggaaaaatgcctacaaataatatgat 10722910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 11976787 - 11976874
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||||| | ||||| |||||| |||||| ||| |||||| ||||||  ||| ||| | |||||||||||||||||||||||    
T  11976787 ctaaaaatgtaaaggatgaatctgcgaacaaactcacaacatccaagttaataacataaaacgggaaaatgcctacaaataatatgat 11976874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 11867869 - 11867801
Alignment:
Q  157 tgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatat 225  Q
    ||||| |||||| || ||| ||||| |||||||||||| ||||||||  ||||||||||||||||||||    
T  11867869 tgaatctgcgaacaagctcacaatacccaaattaatagcatacaacaacaaaatgcctacaaataatat 11867801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 8096350 - 8096437
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||||| ||||||| |||||| |||||| ||  | |||| ||||||| ||| ||  | |||||||||||||||||||||||    
T  8096350 ctaaaaatgtaaagggtgaatttgcgaacaaactcacaccacccaagttaatagcataaaatggcaaaatgcctacaaataatatgat 8096437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 13007465 - 13007378
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| ||| || |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  13007465 ctaaaaacgtaaagggtgaatctgcaaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 13007378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 24229636 - 24229723
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| |||||  |||||| |||||| |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  24229636 ctaaaaacgtaaagagtgaatctgcgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 24229723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 26825666 - 26825579
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| | |||| |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  26825666 ctaaaaacgtaaagggtgaatctacgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 26825579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 34945629 - 34945542
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||| | |||| ||||||| |||||||   |||||||||| ||||||||||||    
T  34945629 ctaaaaacgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacgacaaaatgcctataaataatatgat 34945542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 8088054 - 8088151
Alignment:
Q  131 ttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| ||| ||||||| ||||| | ||||| |||||| ||||||  || | |||| ||||||| ||||||  | |||||||||||||||||||||||    
T  8088054 ttcaagattgctaaaaaggtaaaagatgaatctgcgaacaaactcataacacccaagttaatagcatacaaaggcaaaatgcctacaaataatatgat 8088151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 7886787 - 7886858
Alignment:
Q  157 tgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| || ||| |||||| || ||||||| ||||||| ||| ||||||| |||||||||||| ||||||||    
T  7886787 tgaatctgtgaacaaactcacagtatccaagttaatagcatataacagaataatgcctacaaaaaatatgat 7886858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 14082248 - 14082335
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||  |||| ||||||| |||||| |||||| ||  ||| || ||||||| |||||||   |||||||||||||||||||||||    
T  14082248 ctaaaaacataaagggtgaatctgcgaacaaactcccatcatcgaagttaatagcatacaacgacaaaatgcctacaaataatatgat 14082335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 14726313 - 14726400
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| || ||| |||||| ||  |||||| |||||| |||| |||   |||||||||||||||||||||||    
T  14726313 ctaaaaacgtaaagggtgaatctgtgaacaaactcacagcatccaagttaatattataaaacgacaaaatgcctacaaataatatgat 14726400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 25980393 - 25980306
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| ||| || |||||| ||  | |||| ||||||| ||| ||| | |||||||||||||||||||||||    
T  25980393 ctaaaaacgtaaagggtgaatctgcaaacaaactcacatcacccaagttaatagcatataacggcaaaatgcctacaaataatatgat 25980306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 6011991 - 6012077
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||| ||||||| |||||| |||||| ||  | |||| ||||||| ||| ||| | | |||||||||||||||||||||    
T  6011991 taaaaacgtaaagggtgaatctgcgaacaaactcacatcacccaagttaatagcataaaacggtagaatgcctacaaataatatgat 6012077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 26877962 - 26878047
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||| | ||||| |||||| |||||| ||| |||||| ||||||| |||||||   ||| |||||||||||||||||||    
T  26877962 taaaaacgtaaaggatgaatctgcgaacaaactcacaacatccaagttaatag-atacaacgacaaagtgcctacaaataatatgat 26878047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 39567537 - 39567419
Alignment:
Q  110 tacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaa 209  Q
    ||||||||| | ||||||||| |||| ||  ||||||| ||| ||||||||| | |||| |||||| ||| | ||||  |||||  |||||||   ||||    
T  39567537 tacatcaaagacaataacatgatcaatatcactaaaaacgtatatggtgaatctacgaacaaactcacaacacccaaggtaataacatacaacgacaaaa 39567438  T
Q  210 tgcctacaaataatatgat 228  Q
    || ||||||||||||||||    
T  39567437 tgtctacaaataatatgat 39567419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 43148974 - 43148896
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    ||||||||||||| | ||||| |||||| |||||| ||| |||||| ||||||| ||| ||| | | ||||||||||||    
T  43148974 ctaaaaatgtaaaggatgaatctgcgaacaaactcacaacatccaagttaatagcatataacggcataatgcctacaaa 43148896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 19103366 - 19103406
Alignment:
Q  188 ttaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||||| |||||||||||| ||||||||||||    
T  19103366 ttaatagcatacaacggaaaaatgcctataaataatatgat 19103406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 38142761 - 38142674
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||||| ||||||||||| || |||||| ||  || ||| ||||||||||||||||  |||||||||||||||||||||||    
T  38142761 ctaaaaatgtaaagggtgaatatgcaaacaaactcacagcattcaagttaatagtatacaacaataaaatgcctacaaataatatgat 38142674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 48650586 - 48650673
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||||| ||||||| |||||| |||||| ||| | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  48650586 ctaaaaatgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 48650673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 30830222 - 30830124
Alignment:
Q  130 gttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||| | |||||||||||| | ||||||||||||||||||| ||  || |||||||||||||||||||   ||||| | |||||||||||||||    
T  30830222 gttcaacatccttaaaaatgtaaaagatgaatatgcgaataaactcacatcatacaaattaatagtatacaactataaaatccgtacaaataatatgat 30830124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 42461004 - 42460898
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| ||  ||| ||||||||| ||||||| |||||| |||||| || || |||| ||||||| ||||||||  ||||||||||||||||    
T  42461004 aataacatgatcaatatcgctataaatgtaaagggtgaatctgcgaacaaactcacagtacccaagttaatagcatacaacaacaaaatgcctacaaata 42460905  T
Q  222 atatgat 228  Q
    |||||||    
T  42460904 atatgat 42460898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 45568297 - 45568384
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| ||||||||||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  45568297 ctaaaaacgtaaagggtgaatctgcgaataaactcacatcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 45568384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 51303495 - 51303582
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||| ||||||||| |||||| |||||| ||| | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  51303495 ctaaaaacgtatatggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 51303582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 27856420 - 27856314
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| ||  ||||||| ||||| | ||||| |||||| |||||| ||  |||||| ||||||| || |||| ||||||||||||||||||    
T  27856420 aataacatgatcaatatcgctaaaaacgtaaaagatgaatctgcgaacaaactcacatcatccaagttaatagcatgcaacggaaaaatgcctacaaata 27856321  T
Q  222 atatgat 228  Q
    |||||||    
T  27856320 atatgat 27856314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 24175964 - 24176045
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaaca 203  Q
    |||||||||||||||||  ||||||||||||| ||||||| ||| || |||||| ||||| |||| ||||||| ||||||||    
T  24175964 aataacatgttcaacatcgctaaaaatgtaaagggtgaatttgcaaacaaactcacaatacccaatttaatagcatacaaca 24176045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 628775 - 628862
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| | ||||| |||||| |||||| ||| | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  628775 ctaaaaacgtaaaggatgaatctgcgaacaaactcacaacacccaagttaatagaatacaacggcaaaatgcctacaaataatatgat 628862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 43017124 - 43017037
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| | |||||||| |||||||||| ||| | | || ||||||| ||||||| | |||||||||||||||||||||||    
T  43017124 ctaaaaacgtaaaggatgaatatgtgaataaactcacaacacctaagttaatagcatacaacggcaaaatgcctacaaataatatgat 43017037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 44959825 - 44959912
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| ||| ||||||||| ||  |||||| ||||||| ||||||  | |||||||||||||||||||||||    
T  44959825 ctaaaaacgtaaagggtgaatctgcaaataaactcacagcatccaagttaatagcatacaatggcaaaatgcctacaaataatatgat 44959912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 52922969 - 52923056
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  52922969 ctaaaaacgtaaagggtgaatctgcgaacaaactcacagcagccaagttaatagcatacaacggtaaaatgcctacaaataatatgat 52923056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 21289647 - 21289753
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| ||  ||||||| ||| | ||||||| |||||| |||||| ||  | |||| ||||||| ||||||| | ||||||||||||||||    
T  21289647 aataacatgatcaatatcgctaaaaacgtatagggtgaatctgcgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaata 21289746  T
Q  222 atatgat 228  Q
    |||||||    
T  21289747 atatgat 21289753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 51923982 - 51923876
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| ||  ||||||| ||| | | || ||||||||| |||||| ||| | |||| ||||||| ||||||| | ||||||||||||||||    
T  51923982 aataacatgatcaatatcgctaaaaacgtataggatggatatgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaata 51923883  T
Q  222 atatgat 228  Q
    |||||||    
T  51923882 atatgat 51923876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 50194178 - 50194274
Alignment:
Q  132 tcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||  ||||||| ||||| | ||||| |||||| |||||| ||| |||||| ||||||| ||| ||| | |||||||||||||| ||||||||    
T  50194178 tcaacatcgctaaaaacgtaaaggatgaatctgcgaacaaactcacaacatccaagttaatagcatataacggcaaaatgcctacaaaaaatatgat 50194274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 9998703 - 9998616
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| | |||| |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  9998703 ctaaaaacgtaaagggtgaatctacgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 9998616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 10108472 - 10108385
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| | |||| |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  10108472 ctaaaaacgtaaagggtgaatctacgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 10108385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 10229712 - 10229625
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| | |||| |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  10229712 ctaaaaacgtaaagggtgaatctacgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 10229625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 12050500 - 12050587
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||||| ||||||| |||||| |||||| || ||| ||| ||||||  |||||||   ||||||| |||||||||||||||    
T  12050500 ctaaaaatgtaaagggtgaatttgcgaacaaactcacactattcaagttaataacatacaacgacaaaatgcttacaaataatatgat 12050587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 21313272 - 21313185
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||||| ||||||| | |||| |||||| ||  | |||| ||||||| ||||||| | |||||| ||||||||||||||||    
T  21313272 ctaaaaatgtaaagggtgaatctccgaacaaactcacagcacccaagttaatagcatacaacggcaaaatggctacaaataatatgat 21313185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 21431849 - 21431762
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||||||||||| |||||| || ||| ||  | |||| ||||||  ||||||| | |||||||||||||||||||||||    
T  21431849 ctaaaaacgtaaatggtgaatctgcgaacaatctcacagcacccaagttaatatcatacaacggcaaaatgcctacaaataatatgat 21431762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 21533661 - 21533748
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||| ||| |||||| |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  21533661 ctaaaaacgtaaaaggtaaatctgcgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 21533748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 33580116 - 33580029
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| ||| || ||| | |||| ||||||| ||| ||| | |||||||||||||||||||||||    
T  33580116 ctaaaaacgtaaagggtgaatctgcgaacaaaatcacaacacccaagttaatagcataaaacggcaaaatgcctacaaataatatgat 33580029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 38859980 - 38860051
Alignment:
Q  157 tgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| |||||| |||||| ||| | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  38859980 tgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 38860051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 53807710 - 53807797
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| | ||||| |||||| |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  53807710 ctaaaaacgtaaaggatgaatctgcgaacaaactcacaccacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 53807797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 43564502 - 43564595
Alignment:
Q  110 tacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaaca 203  Q
    ||||||||||||||  |||| || ||||||  ||||||||||||  |||||| | |||| ||| || |||||| ||||||| ||||||||||||    
T  43564502 tacatcaaatataaacacatatttaacattgttaaaaatgtaaaatgtgaatctacgaacaaattcacaatattcaaattagtagtatacaaca 43564595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 46220877 - 46220812
Alignment:
Q  163 tgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| |||||||||  | |||||||||| | ||||||| | |||||||||||||||||||||||    
T  46220877 tgcgaacaaactcgcagcacccaaattaatggcatacaacggtaaaatgcctacaaataatatgat 46220812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 29922282 - 29922206
Alignment:
Q  152 aatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| |||| |||||| |||||| || | ||||| ||||||| ||||||| | |||||||||||||| ||||||||    
T  29922282 aatggggaatctgcgaacaaactcacattttccaagttaatagcatacaacggcaaaatgcctacaaacaatatgat 29922206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 29971435 - 29971359
Alignment:
Q  152 aatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| |||| |||||| |||||| || | ||||| ||||||| ||||||| | |||||||||||||| ||||||||    
T  29971435 aatggggaatctgcgaacaaactcacattttccaagttaatagcatacaacggcaaaatgcctacaaacaatatgat 29971359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 32701727 - 32701643
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatat 225  Q
    |||||||| |||| ||||||| |||||| |||||| ||  |||||| || |||| ||||||| | |||||||||||| |||||||    
T  32701727 ctaaaaatataaaaggtgaatctgcgaacaaactcacagcatccaagttcatagcatacaacggcaaaatgcctacagataatat 32701643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 43488445 - 43488529
Alignment:
Q  144 aaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||| ||||||| ||||| |||||| |||||| ||  | |||||||||||| ||||||| | |||| ||||| ||||||||||||    
T  43488445 aaaacgtaaatgatgaatctgcgaacaaactcacagcacccaaattaatagcatacaacggcaaaaagcctaaaaataatatgat 43488529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 4711702 - 4711631
Alignment:
Q  157 tgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| ||| || |||||| ||| | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  4711702 tgaatctgcaaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 4711631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 6954548 - 6954635
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| ||| || |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||| ||||    
T  6954548 ctaaaaacgtaaagggtgaatctgcaaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaataatttgat 6954635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 7546883 - 7546764
Alignment:
Q  110 tacatcaaatataataacatgttcaacattcctaaaaatgta-aatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaa 208  Q
    ||||||||| | ||| ||||| |||| ||  ||||||| ||| || ||||||| ||| || |||||| ||  | |||| ||||||| ||||||| | |||    
T  7546883 tacatcaaagacaatgacatgatcaatatcgctaaaaacgtataagggtgaatctgcaaacaaactcacagcacccaagttaatagcatacaacggcaaa 7546784  T
Q  209 atgcctacaaataatatgat 228  Q
    ||||||||||||||||||||    
T  7546783 atgcctacaaataatatgat 7546764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 8914948 - 8914861
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||| | ||||||| |||||| |||||| ||  |  ||| ||||||| ||||||| | |||||||||||||||||||||||    
T  8914948 ctaaaaacgtataaggtgaatctgcgaacaaactcacatcactcaagttaatagcatacaacggcaaaatgcctacaaataatatgat 8914861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 19619949 - 19619862
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||||| ||||| |||||  ||||||  || |||  | ||||||| ||||||| | |||||||||||||||||||||||    
T  19619949 ctaaaaacgtaaatgatgaatctgcgatcaaactcaaaacatcttagttaatagcatacaacggcaaaatgcctacaaataatatgat 19619862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 20987647 - 20987694
Alignment:
Q  181 atccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||||| ||||||| | |||||||||||||||||||||||    
T  20987647 atccaagttaatagcatacaactgcaaaatgcctacaaataatatgat 20987694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 38546035 - 38545948
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| || ||| |||||| ||  | |||| ||||||| ||| ||| | |||||||||||||||||||||||    
T  38546035 ctaaaaacgtaaagggtgaatctgggaacaaactcccaccacccaagttaatagcataaaacggcaaaatgcctacaaataatatgat 38545948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 40556938 - 40556851
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||  |||| ||||||| |||||| |||||| ||| | |||| |  |||| ||||||| | |||||||||||||||||||||||    
T  40556938 ctaaaaacataaagggtgaatctgcgaacaaactcacaacacccaagtgcatagcatacaacggcaaaatgcctacaaataatatgat 40556851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 7448767 - 7448853
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||||||||||| |||||| |||||| ||  | | || ||||||| ||||| | | |||||| ||||||||||||||||    
T  7448767 taaaaacgtaaatggtgaatctgcgaacaaactcacatcacctaagttaatagcatacagcggcaaaatgtctacaaataatatgat 7448853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 7456909 - 7456995
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||||||||||| |||||| |||||| ||  | | || ||||||| ||||| | | |||||| ||||||||||||||||    
T  7456909 taaaaacgtaaatggtgaatctgcgaacaaactcacatcacctaagttaatagcatacagcggcaaaatgtctacaaataatatgat 7456995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 10233297 - 10233219
Alignment:
Q  150 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||| ||||||| | |||| |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  10233297 taaagggtgaatgtacgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 10233219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 633114 - 633143
Alignment:
Q  49 tttaatccaccaataaattcttactttttt 78  Q
    ||||||||||||||||||||||||||||||    
T  633114 tttaatccaccaataaattcttactttttt 633143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 48200036 - 48199983
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactc 175  Q
    |||||||||||||||||  ||||||| ||||| ||||||| |||||| ||||||    
T  48200036 aataacatgttcaacatcgctaaaaacgtaaagggtgaatttgcgaacaaactc 48199983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 4822051 - 4821955
Alignment:
Q  132 tcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||| |||||||  ||||   ||||| |||||| |||||| ||  | |||| ||||||| ||| ||||| |||||||||||||| ||||||||    
T  4822051 tcaacattgctaaaaacataaagaatgaatctgcgaacaaactcacatcacccaagttaatagcatataacagcaaaatgcctacaaaaaatatgat 4821955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 32460859 - 32460787
Alignment:
Q  118 atataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaatta 190  Q
    ||||||||||||| |||| ||  ||||||||||||| ||| ||| |||||| ||| |  ||||||||||||||    
T  32460859 atataataacatgatcaatatcactaaaaatgtaaaaggtaaatttgcgaacaaatttacaatatccaaatta 32460787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 40487546 - 40487474
Alignment:
Q  156 gtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| |||||| |||||| ||| | |||| ||||||  ||| ||| | |||||||||||||||||||||||    
T  40487546 gtgaatttgcgaacaaactcacaacacccaagttaataacatataacggcaaaatgcctacaaataatatgat 40487474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 11985086 - 11985173
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||||| ||||| |||||| ||| || ||| |||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  11985086 ctaaaaacgtaaatgatgaatttgcgaacaaattcacaacatccaagttaataggatacaacagcaaaatgcctacaaataatatgat 11985173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 17151704 - 17151584
Alignment:
Q  108 agtacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaa 207  Q
    ||||||||| ||| |||||||||||||| ||   |||||| ||||| |||||||||||| | |||||| ||| || ||| ||||||| ||||||||  ||    
T  17151704 agtacatcagatacaataacatgttcaaaatcgttaaaaacgtaaagggtgaatatgcggacaaactcacaacattcaagttaatagcatacaacaacaa 17151605  T
Q  208 aatgcctacaaataatatgat 228  Q
    ||| ||||| |||||||||||    
T  17151604 aatacctactaataatatgat 17151584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 18107570 - 18107690
Alignment:
Q  108 agtacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaa 207  Q
    ||||||||| |||||||||||||||||  ||  ||||||| |||||  ||||||||||||| |||||| ||| |  ||| |||||| |||| |||   ||    
T  18107570 agtacatcacatataataacatgttcattatcactaaaaacgtaaagagtgaatatgcgaacaaactcacaacacgcaagttaataatataaaacgacaa 18107669  T
Q  208 aatgcctacaaataatatgat 228  Q
    |||||||||||||||||||||    
T  18107670 aatgcctacaaataatatgat 18107690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 7646725 - 7646638
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||| | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  7646725 ctaaaaacgtaaaaggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 7646638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 12554000 - 12554121
Alignment:
Q  108 agtacatcaaatataataacatgttcaacattcctaaaaat-gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaa 206  Q
    |||| |||| ||| |||||||| ||||||||| |||||||  ||||| ||||||| |||||| |||||| ||| | |||| ||||||  |||||||   |    
T  12554000 agtatatcagatacaataacatattcaacattgctaaaaaacgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatatcatacaacgaca 12554099  T
Q  207 aaatgcctacaaataatatgat 228  Q
    ||||||||||||||||||||||    
T  12554100 aaatgcctacaaataatatgat 12554121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 212
Target Start/End: Original strand, 28871595 - 28871712
Alignment:
Q  95 cattccaatagaaagtacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatag 194  Q
    ||||| ||| || ||||||||| ||| |||||||| ||||||||| |||||||| |||| |||||||   |||| |||||| ||  |||||| |||||||    
T  28871595 cattcaaattgagagtacatcagatacaataacattttcaacattgctaaaaatataaagggtgaatccacgaacaaactcacagcatccaagttaatag 28871694  T
Q  195 tatacaacagaaaaatgc 212  Q
    |||||||| | |||||||    
T  28871695 tatacaacggcaaaatgc 28871712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 31788703 - 31788618
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatg 226  Q
    ||||||| ||||| ||||||| |||||| |||||| ||  |||||| ||||||| ||||||| | |||||||||||||||||||||    
T  31788703 ctaaaaacgtaaagggtgaatctgcgaacaaactcacagcatccaagttaatagcatacaacggcaaaatgcctacaaataatatg 31788618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 37994540 - 37994444
Alignment:
Q  132 tcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| |||||||  ||||| | ||||| |||||| |||||| ||| | |||| ||||||| ||| ||||| |||||||||||||||||||||||    
T  37994540 tcaacatccctaaaatcgtaaaagatgaatctgcgaacaaactcacaacacccaagttaatagcatataacagcaaaatgcctacaaataatatgat 37994444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 4779000 - 4778913
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||  | |||||||||||  ||||||| | |||||||||||||||||||||||    
T  4779000 ctaaaaacgtaaagggtgaatctgcgaacaaactcacagcacccaaattaataacatacaacggcaaaatgcctacaaataatatgat 4778913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 18763715 - 18763628
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||| | |||| ||||||| ||| ||| | |||||||||||||||||||||||    
T  18763715 ctaaaaacgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcataaaacggcaaaatgcctacaaataatatgat 18763628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 19598109 - 19597999
Alignment:
Q  118 atataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctaca 217  Q
    ||||||||||||| |||||||| | ||||| |||||||   |||||||||| ||| || ||| |  ||| ||||||| ||||||| | |||||| |||||    
T  19598109 atataataacatgatcaacattgcaaaaaacgtaaatgaanaatatgcgaacaaattcacaacactcaagttaatagcatacaacggtaaaatgtctaca 19598010  T
Q  218 aataatatgat 228  Q
    |||||||||||    
T  19598009 aataatatgat 19597999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 27097260 - 27097347
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| ||| || |||||| ||| | |||| ||||||||||||||| | ||||| |||||||||||||||||    
T  27097260 ctaaaaacgtaaagggtgaatctgcaaacaaactcacaacacccaagttaatagtatacaacggcaaaattcctacaaataatatgat 27097347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 29279423 - 29279510
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| |||||||||||||||||||| |||||| ||| | |  | ||||||| ||| ||| | |||||||||||||||||||||||    
T  29279423 ctaaaaacgtaaatggtgaatatgcgaacaaactcacaacaccatagttaatagcataaaacggcaaaatgcctacaaataatatgat 29279510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 32448469 - 32448556
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||| |||||| ||||| |  ||| |||||| ||| |||||| ||||||| ||||||| | |||||||||||||||||||||||    
T  32448469 ctaaaaatataaatgatgaatctatgaacaaactcacaacatccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 32448556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 37876459 - 37876546
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||  |||||||||||| |||||| |||||||||  | |||| ||||||| |||| || | |||||||||||||||||||||||    
T  37876459 ctaaaaacataaatggtgaatctgcgaacaaactcgcatcacccaagttaatagcatacgacggcaaaatgcctacaaataatatgat 37876546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 3309211 - 3309105
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| ||  ||||||| ||| | ||||||| ||||||||||||| ||  | |||| ||||||| ||||||| | |||||| |||||||||    
T  3309211 aataacatgatcaatatcgctaaaaacgtatagggtgaatctgcgaataaactcacagcacccaagttaatagcatacaacggcaaaatgactacaaata 3309112  T
Q  222 atatgat 228  Q
    |||||||    
T  3309111 atatgat 3309105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 10237050 - 10237156
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| ||  ||||||| ||| | ||||||| |||||| |||||| ||| | |||| ||||||| |||||||   ||||||||||||||||    
T  10237050 aataacatgatcaatatcgctaaaaacgtatagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacgacaaaatgcctacaaata 10237149  T
Q  222 atatgat 228  Q
    |||||||    
T  10237150 atatgat 10237156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 32190902 - 32190824
Alignment:
Q  150 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||||||| ||| ||||||||| ||| ||  || ||||||| |||||| |||||||||| |||||||||||||||    
T  32190902 taaatggtgaatctgcaaataaactcacaacatttaagttaatagcatacaatagaaaaatgcttacaaataatatgat 32190824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 33585589 - 33585675
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||| | |||||||||||| |||||| ||| | |||| ||||||| ||||||| | ||||||| |||||||||||||||    
T  33585589 taaaaacgtaaaggatgaatatgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcatacaaataatatgat 33585675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 4100582 - 4100496
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||| | |||| ||||||  ||||||| | |||||||||||||||||||||||    
T  4100582 ctaaaaacgtaaagggtgaatctgcgaacaaactcacaaca-ccaagttaatatcatacaacggcaaaatgcctacaaataatatgat 4100496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 12677304 - 12677390
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||  |||| ||||||| |||||||||||||  |||| |||| ||||||| ||| ||| ||||||||||||| |||||||||||    
T  12677304 ctaaaaacataaagggtgaatctgcgaataaactcataatacccaagttaatagcataaaacggaaaaatgcctac-aataatatgat 12677390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 17249000 - 17249087
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||||| ||||| |||||| |||||| ||  | |||| ||||||| ||||||| | |||||| ||||||||||||||||    
T  17249000 ctaaaaacgtaaatgatgaatctgcgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgtctacaaataatatgat 17249087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 4041448 - 4041534
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||| ||||||| |||||| |||||| ||| | | || ||||||| || |||||| |||||| ||||||||||||||||    
T  4041448 taaaaacgtaaagggtgaatctgcgaacaaactcacaacacctaagttaatagcatgcaacagcaaaatggctacaaataatatgat 4041534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 16376185 - 16376099
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||||| | ||||||| |||||| |||||| ||  |||||| ||||| | ||||||||  |||||| ||||||||||||||||    
T  16376185 taaaaatgtagacggtgaatctgcgaacaaactcacatcatccaagttaatcgcatacaacaccaaaatgactacaaataatatgat 16376099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 9169110 - 9169198
Alignment:
Q  141 ctaaaaatgtaaatggt-gaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||| |||| || ||| |||||| ||  |||||| ||||||| ||||||| | |||||||||||||||||||||||    
T  9169110 ctaaaaacgtaaagggttgaatctgtgaacaaactcacagcatccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 9169198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 27477407 - 27477319
Alignment:
Q  131 ttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    |||||||||  |||||||||||||| ||||| |||||| | |||| ||| |||||| ||||||||||  ||| | | ||||||||||||    
T  27477407 ttcaacattgttaaaaatgtaaatgatgaatctgcgaacatactcacaacatccaagttaatagtatttaacggtataatgcctacaaa 27477319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 35220575 - 35220495
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||| ||||| |||||||||||||| |||||| ||  | |||| ||||||| |||||||   ||||||||||||||||    
T  35220575 ctaaaaacgtaaagggtgaatatgcgaacaaactcacagcacccaagttaatagcatacaacgacaaaatgcctacaaata 35220495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 1421922 - 1421836
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| ||| || |||||| ||| | |||| ||||||| |||||||   |||||||||||||||||||||||    
T  1421922 ctaaaaacgtaaa-ggtgaatctgcaaacaaactcacaacacccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 1421836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 4903998 - 4904085
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| | ||||| | |||| |||||| ||| |||||| ||||||| |||||||   |||||| ||||||||||||||||    
T  4903998 ctaaaaacgtaaaggctgaatctacgaacaaactcacaacatccaagttaatagcatacaacgacaaaatgtctacaaataatatgat 4904085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 10929912 - 10929825
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||  |||| ||||||||||| || |||||| ||  |||||| ||||||| || |||||  |||||||||| ||||||||||||    
T  10929912 ctaaaaacataaagggtgaatatgcaaacaaactcacagcatccaagttaatagcattcaacaacaaaatgcctataaataatatgat 10929825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 36692113 - 36692034
Alignment:
Q  149 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| ||||||| || ||| |||||| ||| | |||| ||||||| ||| ||| | |||||||||||||||||||||||    
T  36692113 gtaaagggtgaatctgtgaacaaactcacaacaaccaagttaatagcataaaacggcaaaatgcctacaaataatatgat 36692034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 19028768 - 19028854
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||||||| ||||||| |||||| || ||| ||| |  ||| ||||||| ||| |||  ||||||||||||||||| ||||||    
T  19028768 taaaaatgtaaaaggtgaatttgcgaacaatctcacaacactcaagttaatagcataaaacgaaaaaatgcctacaaatagtatgat 19028854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 28533788 - 28533894
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||||||   |||||| ||||| |||| || |||||| |||||| ||| |  ||| ||||||| |||||||   ||||| ||||||||||    
T  28533788 aataacatgatcaacatcgttaaaaacgtaaaaggtggatctgcgaacaaactcacaacactcaagttaatagcatacaacgacaaaatacctacaaata 28533887  T
Q  222 atatgat 228  Q
    |||||||    
T  28533888 atatgat 28533894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 41431277 - 41431199
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    ||||||| ||||| | | ||| ||||||||||||| ||| |||||| ||||||||||| ||| | | ||||||||||||    
T  41431277 ctaaaaacgtaaaggataaatctgcgaataaactcacaacatccaagttaatagtatataacggcataatgcctacaaa 41431199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 228
Target Start/End: Original strand, 33760000 - 33760133
Alignment:
Q  95 cattccaatagaaagtacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatag 194  Q
    ||||| ||| || ||||||| | ||| |||||||||||||||||  ||||||| ||||| | ||| | ||  || |||||  ||  |  ||| |||||||    
T  33760000 cattcaaatcgagagtacattagatacaataacatgttcaacatcgctaaaaacgtaaaggatgagtctgtaaacaaactaacagcacacaagttaatag 33760099  T
Q  195 tatacaacagaaaaatgcctacaaataatatgat 228  Q
      |||||||| |||||||||||||||||||||||    
T  33760100 cttacaacagcaaaatgcctacaaataatatgat 33760133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 8806125 - 8806037
Alignment:
Q  131 ttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    ||||||||  ||||||| ||||| | ||||| |||||| || ||| ||| |||||| ||||||| ||| ||| | ||||||||||||||    
T  8806125 ttcaacatcgctaaaaacgtaaaggatgaatctgcgaacaatctcacaacatccaagttaatagcatataacggcaaaatgcctacaaa 8806037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 43853731 - 43853613
Alignment:
Q  110 tacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaa 209  Q
    ||||||| ||| ||||||||  |||||||  ||||||||||||||||| ||| |||||| |||||| ||| |||||| ||||||  ||||||||  ||||    
T  43853731 tacatcagatacaataacatactcaacatcgctaaaaatgtaaatggttaatctgcgaacaaactcacaacatccaagttaataacatacaacaacaaaa 43853632  T
Q  210 tgcctacaaataatatgat 228  Q
    |||  ||||||||||||||    
T  43853631 tgctgacaaataatatgat 43853613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 52060756 - 52060862
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||||||||||   |||||||||||||  |||||| ||| || ||||||  || || ||||||||||||||||||||  |||||||||||||| |    
T  52060756 aataacatgttcaacaacactaaaaatgtaaaatgtgaatctgcaaacaaactcataacattcaaattaatagtatacaacaacaaaatgcctacaaaaa 52060855  T
Q  222 atatgat 228  Q
    |||||||    
T  52060856 atatgat 52060862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 36194996 - 36194878
Alignment:
Q  110 tacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaa 209  Q
    ||||||| | ||||||||| | |||| ||  |||||||  || | ||||||| |||||| |||||| ||| |||||| ||||||| ||||||| | ||||    
T  36194996 tacatcagacataataacacgatcaatatcactaaaaacatataaggtgaatctgcgaacaaactcacaacatccaagttaatagcatacaacggcaaaa 36194897  T
Q  210 tgcctacaaataatatgat 228  Q
    |||||||||||||||||||    
T  36194896 tgcctacaaataatatgat 36194878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 48257485 - 48257571
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||| ||||||| |||||| |||||| ||| |||||| ||||||| ||||||| | ||||| |||||||||||||||||    
T  48257485 taaaaacgtaaagggtgaatctgcgaacaaactcacaaaatccaagttaatagcatacaacggcaaaatacctacaaataatatgat 48257571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 2521036 - 2520953
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataata 224  Q
    ||||||| ||||| ||||||| |||||| |||||| ||| | |||| ||||||| ||||||| | |||||||||||||||||||    
T  2521036 ctaaaaacgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataata 2520953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 19853365 - 19853451
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| ||||| ||||||| |||||| |||||| ||| | |||| ||||||| ||||||| | |||||||||| ||||||||||||    
T  19853365 taaaaacgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctagaaataatatgat 19853451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 43095892 - 43095798
Alignment:
Q  134 aacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| |||||||| ||||||| ||||| |||||| |||||| ||  |||||||||||||| |||||||   ||||| ||||||||| |||||||    
T  43095892 aacatccctaaaaacgtaaatgatgaatctgcgaacaaactcacatcatccaaattaatagcatacaactacaaaatacctacaaatgatatgat 43095798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 12199533 - 12199632
Alignment:
Q  128 atgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatga 227  Q
    |||||||||||  ||| ||| ||||||||||||| |||||| |||||| ||| | |||| | ||||  ||||||||| ||||| ||||||||||||||||    
T  12199533 atgttcaacatcgctacaaacgtaaatggtgaatctgcgaacaaactcacaacacccaagt-aataacatacaacagtaaaatacctacaaataatatga 12199631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 31891139 - 31891223
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatat 225  Q
    ||||||| ||| | ||||||| |||||| |||||| ||| | |||| ||||||| ||||||| | ||||||||||||||||||||    
T  31891139 ctaaaaacgtatagggtgaatttgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatat 31891223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 1621344 - 1621448
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| ||| ||||||| ||| | ||||||| |||||| |||||| ||| |||||| ||||| | ||||||| ||||  || |||||||||    
T  1621344 aataacatgatcaatattgctaaaaacgtatagggtgaatctgcgaacaaactcacaacatccaagttaattgcatacaacggaaa--tgtctacaaata 1621441  T
Q  222 atatgat 228  Q
    |||||||    
T  1621442 atatgat 1621448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 22611440 - 22611353
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||  | |||| ||||||  ||||||| | |||||||||||||||||||||||    
T  22611440 ctaaaaacgtaaagggtgaatctgcgaacaaactcacagcacccaatttaataccatacaacggcaaaatgcctacaaataatatgat 22611353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 56040498 - 56040585
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||  |||||| ||  |||||| ||||||| |||||||   |||||||||||||||||||||||    
T  56040498 ctaaaaacgtaaagggtgaatctgcgagcaaactcacagcatccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 56040585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 33921294 - 33921224
Alignment:
Q  158 gaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||| |||||| ||| |||||| ||||||| |||||||   | |||||||||||||||||||||    
T  33921294 gaatatgcgaacaaactcacaacatccaagttaatagcatacaactatacaatgcctacaaataatatgat 33921224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 52097748 - 52097800
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaata 193  Q
    ||||||| ||||| ||||||||||||||||||||| ||| |||||| ||||||    
T  52097748 ctaaaaacgtaaagggtgaatatgcgaataaactcacaacatccaagttaata 52097800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 21686102 - 21686181
Alignment:
Q  149 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| |||||||||||||| |||||| ||  | |||| ||||||  ||||| | | |||||||||||||||||||||||    
T  21686102 gtaaagggtgaatatgcgaacaaactcacagcacccaagttaataacatacagcggcaaaatgcctacaaataatatgat 21686181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 35348564 - 35348477
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| ||| || |||||| ||| | |||| ||||||| ||| ||  | |||||||||||||||||||||||    
T  35348564 ctaaaaacgtaaagggtgaatctgcaaacaaactcacaacacccaagttaatagcataaaatggcaaaatgcctacaaataatatgat 35348477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 47320280 - 47320351
Alignment:
Q  157 tgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| |||||| |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  47320280 tgaatctgcgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 47320351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 51888063 - 51888150
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||||| |||| ||||||||| |||||| ||| | | || ||||||| || |||  | |||| ||||||||||||||||||    
T  51888063 ctaaaaatgtaaagggtggatatgcgaacaaactcacaacacctaagttaatagcatgcaatggcaaaacgcctacaaataatatgat 51888150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 53811284 - 53811198
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| || ||| ||| | |||| ||||||| |||||||   |||||||||||||||||||||||    
T  53811284 ctaaaaacgtaaagggtgaatctgcgaacaa-ctcacaacacccaagttaatagcatacaacgccaaaatgcctacaaataatatgat 53811198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 27652231 - 27652113
Alignment:
Q  110 tacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaa 209  Q
    ||||||||| | ||||||||| || | ||  ||||||| ||| | | ||||| |||||| |||||| ||| |  ||| ||||||| ||||||| | ||||    
T  27652231 tacatcaaagacaataacatgatcgatatcgctaaaaacgtataggatgaatctgcgaacaaactcacaacactcaagttaatagcatacaacggcaaaa 27652132  T
Q  210 tgcctacaaataatatgat 228  Q
    || ||||||||||||||||    
T  27652131 tgtctacaaataatatgat 27652113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 36161999 - 36161881
Alignment:
Q  110 tacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaa 209  Q
    ||||||||||| ||||||||| |||||||   |||||| |||||  |||||| || ||| |||||| ||| | |||| ||||||  ||| |||    |||    
T  36161999 tacatcaaatacaataacatgatcaacatcgttaaaaacgtaaagagtgaatctgtgaacaaactcacaacacccaagttaataacatataacgaccaaa 36161900  T
Q  210 tgcctacaaataatatgat 228  Q
    |||||||||||||||||||    
T  36161899 tgcctacaaataatatgat 36161881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 10496550 - 10496505
Alignment:
Q  183 ccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||| ||||||| |||| |||| |||||||||||||||||||||||    
T  10496550 ccaagttaatagcatacgacagcaaaatgcctacaaataatatgat 10496505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 17949178 - 17949263
Alignment:
Q  143 aaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||| ||||||| |||||| |||||| ||| | |||| ||||||  |||||| |  ||||||| |||| ||||||||||    
T  17949178 aaaaatgtaaagggtgaatctgcgaacaaactcacaacacccaagttaataacatacaagaacaaaatgcatacatataatatgat 17949263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 17953030 - 17953115
Alignment:
Q  143 aaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||| ||||||| |||||| |||||| ||| | |||| ||||||  |||||| |  ||||||| |||| ||||||||||    
T  17953030 aaaaatgtaaagggtgaatctgcgaacaaactcacaacacccaagttaataacatacaagaacaaaatgcatacatataatatgat 17953115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 40068843 - 40068782
Alignment:
Q  164 gcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatat 225  Q
    |||||||||||| ||| || ||| |||||||||||| |||| |||||||| | |||||||||    
T  40068843 gcgaataaactcacaacattcaagttaatagtatacgacagtaaaatgccaataaataatat 40068782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 48006678 - 48006605
Alignment:
Q  130 gttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaaca 203  Q
    |||||||||  ||||||||||||| | |||||||||||| ||| || |||| ||| | ||||||| ||||||||    
T  48006678 gttcaacatagctaaaaatgtaaaagatgaatatgcgaacaaattcacaatgtcctagttaatagcatacaaca 48006605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 18904 - 19021
Alignment:
Q  110 tacatcaaatataataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaa 209  Q
    ||||||| ||| ||||||||| ||||||| ||| ||||| |||| ||||||| | |||||||| ||  |  | |||||||||||||||||||| | ||||    
T  18904 tacatcagatacaataacatgatcaacatccctgaaaatctaaagggtgaatttacgaataaattcatagca-ccaaattaatagtatacaacggcaaaa 19002  T
Q  210 tgcctacaaataatatgat 228  Q
    ||| |||||||||||||||    
T  19003 tgcatacaaataatatgat 19021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0884 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 1825 - 1912
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| ||||||  || | |||| ||||||  ||||||||| |||||||||||||||||||||||    
T  1825 ctaaaaacgtaaagggtgaatctgcgaacaaactcataacacccaagttaataacatacaacagcaaaatgcctacaaataatatgat 1912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 1581 - 1494
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| ||| || |||||| ||| |||||| ||||||| ||| ||| | |||||||||||||||||||||||    
T  1581 ctaaaaacgtaaagggtgaatctgcaaacaaactcacaacatccaagttaatagcataaaacggcaaaatgcctacaaataatatgat 1494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 51012 - 50926
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||||||| ||||||| |||||| |||||| ||  | |||| ||||||| ||||||  | |||||||||||||||||||||||    
T  51012 taaaaatgtaaagggtgaatctgcgaacaaactcacagcacccaagttaatagcatacaatggcaaaatgcctacaaataatatgat 50926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 9894 - 9981
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| |||||| |||||| ||  | |||| | ||||| ||| ||| |||||||||||||||||||||||||    
T  9894 ctaaaaacgtaaagggtgaatctgcgaacaaactcacagcacccaagtcaatagcataaaacggaaaaatgcctacaaataatatgat 9981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 1511 - 1617
Alignment:
Q  122 aataacatgttcaacattcctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaata 221  Q
    ||||||||| |||| || ||| |||| ||| | ||||||| |||||| |||||| ||  ||| |||||||||| ||| |||   ||||||||||||||||    
T  1511 aataacatgatcaatatcccttaaaacgtatagggtgaatctgcgaacaaactcacatcatcaaaattaatagcatataacgataaaatgcctacaaata 1610  T
Q  222 atatgat 228  Q
    |||||||    
T  1611 atatgat 1617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 65895 - 65981
Alignment:
Q  142 taaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||||||||| ||||||| |||||| ||||||  || |  ||| ||||||| |||||||   |||||||||||||||||||||||    
T  65895 taaaaatgtaaagggtgaatctgcgaacaaactcataacactcaagttaatagcatacaacgacaaaatgcctacaaataatatgat 65981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 6267 - 6180
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||||||||| ||||||| ||| || |||||| ||| |||||| |||||||  |  ||||  |||||| ||||||||||||||||    
T  6267 ctaaaaatgtaaaaggtgaatctgcaaacaaactcacaacatccaagttaatagcttgtaacaacaaaatgtctacaaataatatgat 6180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 8933 - 8858
Alignment:
Q  144 aaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaa 219  Q
    |||||||||| | |||||||| ||| ||||||||| ||||||| ||||||| ||| ||| | | ||||||||||||    
T  8933 aaaatgtaaaggatgaatatgtgaacaaactcgcagtatccaagttaatagcatataacggcataatgcctacaaa 8858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 71730 - 71809
Alignment:
Q  149 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||| ||||||| | |||| |||||| ||  | |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  71730 gtaaagggtgaatctccgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 71809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 32599 - 32686
Alignment:
Q  141 ctaaaaatgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    ||||||| ||||| ||||||| || ||| |||||| ||| |  ||| ||||||||||||| |   |||||||||||||||||||||||    
T  32599 ctaaaaacgtaaagggtgaatctgggaacaaactcacaacactcaagttaatagtatacagcgacaaaatgcctacaaataatatgat 32686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 15714 - 15642
Alignment:
Q  156 gtgaatatgcgaataaactcgcaatatccaaattaatagtatacaacagaaaaatgcctacaaataatatgat 228  Q
    |||||| |||||| |||||| ||  | |||| ||||||| ||| ||| | |||||||||||||||||||||||    
T  15714 gtgaatctgcgaacaaactcacagcacccaagttaatagcatataacggcaaaatgcctacaaataatatgat 15642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University