View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_102 (Length: 210)
Name: NF8890_low_102
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_102 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 46 - 210
Target Start/End: Complemental strand, 42435480 - 42435316
Alignment:
| Q |
46 |
ttgcaaatcaacattttccactagtgttattagccc-tgcttacaaatgttaagatttcaaggtgttttttgaaatctgtaacaaaatcctgaaatgttt |
144 |
Q |
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||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
42435480 |
ttgcaaatcaacattttccactagtgttattggcccctacttacaaatgttaagatttcaaggtgttttttgaaatttgtaa-aaaatcctgaaatgttt |
42435382 |
T |
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| Q |
145 |
tatacaagacttccagaaatataaatacgagtatttcaaaaatttattcaaatcaagaaatatttt |
210 |
Q |
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| T |
42435381 |
tatacaagacttccagaaatataaatacgagtatttcaaaaatttattcaaatcaagaaatatttt |
42435316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 59 - 210
Target Start/End: Original strand, 28293411 - 28293563
Alignment:
| Q |
59 |
ttttccactagtgttattagccc-tgcttacaaatgttaagatttcaaggtgttttttgaaatctgtaacaaaatcctgaaatgttttatacaagacttc |
157 |
Q |
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|||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||| ||||||||| | ||| |
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| T |
28293411 |
ttttccactagtgttattggcccctgcttacaaatgttaggatttcgttgtgttttttgaaatttgtaaaaaaatcctgaaacgttttatacgggtcttt |
28293510 |
T |
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| Q |
158 |
cagaaatataaatacgagtatttcaaaaatttattcaaatcaagaaatatttt |
210 |
Q |
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| T |
28293511 |
cataaatataaatacgagtatttaaaaaatttattcaaatcgagaaacatttt |
28293563 |
T |
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