View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8890_low_106 (Length: 203)

Name: NF8890_low_106
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8890_low_106
NF8890_low_106
[»] chr3 (30 HSPs)
chr3 (1-198)||(15728337-15728534)
chr3 (4-198)||(15335489-15335683)
chr3 (1-198)||(18528931-18529128)
chr3 (1-198)||(5649378-5649575)
chr3 (2-194)||(15894232-15894424)
chr3 (1-198)||(16628006-16628202)
chr3 (1-198)||(4686581-4686778)
chr3 (2-198)||(4886050-4886246)
chr3 (2-198)||(8302783-8302979)
chr3 (2-194)||(31034444-31034636)
chr3 (2-194)||(32292491-32292683)
chr3 (2-134)||(16467862-16467994)
chr3 (2-197)||(8294515-8294710)
chr3 (2-198)||(18049802-18049998)
chr3 (2-198)||(35879306-35879502)
chr3 (2-195)||(14448442-14448635)
chr3 (2-195)||(15742599-15742792)
chr3 (2-198)||(4798175-4798371)
chr3 (1-196)||(4625164-4625356)
chr3 (1-196)||(4720173-4720365)
chr3 (1-196)||(6190858-6191050)
chr3 (1-196)||(18329216-18329408)
chr3 (1-196)||(5712444-5712636)
chr3 (1-196)||(29150279-29150470)
chr3 (1-196)||(5723354-5723546)
chr3 (1-196)||(5757919-5758111)
chr3 (1-196)||(5768822-5769014)
chr3 (1-196)||(17994630-17994822)
chr3 (1-69)||(22389205-22389273)
chr3 (84-172)||(50135619-50135707)
[»] chr1 (4 HSPs)
chr1 (1-197)||(20459685-20459881)
chr1 (1-198)||(20341120-20341317)
chr1 (1-194)||(28151638-28151831)
chr1 (43-198)||(16209505-16209660)
[»] scaffold0558 (1 HSPs)
scaffold0558 (1-198)||(307-504)
[»] chr7 (18 HSPs)
chr7 (1-198)||(16451362-16451559)
chr7 (1-198)||(16039905-16040102)
chr7 (9-194)||(2109177-2109362)
chr7 (2-198)||(16519782-16519978)
chr7 (2-198)||(16504746-16504942)
chr7 (2-194)||(18540578-18540770)
chr7 (2-194)||(26484473-26484665)
chr7 (2-194)||(2775138-2775330)
chr7 (2-198)||(10918232-10918428)
chr7 (2-196)||(2153152-2153346)
chr7 (1-194)||(39211195-39211385)
chr7 (2-196)||(11426145-11426339)
chr7 (1-198)||(5126574-5126768)
chr7 (1-196)||(31089155-31089347)
chr7 (1-196)||(45732720-45732912)
chr7 (1-69)||(5120060-5120128)
chr7 (1-157)||(9617233-9617386)
chr7 (84-196)||(11440222-11440334)
[»] chr2 (19 HSPs)
chr2 (1-198)||(21704631-21704828)
chr2 (1-198)||(34304077-34304274)
chr2 (1-198)||(19457870-19458067)
chr2 (2-198)||(27435913-27436109)
chr2 (2-198)||(27117959-27118155)
chr2 (2-198)||(20836493-20836689)
chr2 (2-198)||(12654117-12654313)
chr2 (53-191)||(27391638-27391776)
chr2 (2-198)||(23136863-23137059)
chr2 (2-198)||(28880789-28880985)
chr2 (1-196)||(31892122-31892314)
chr2 (1-196)||(34156266-34156458)
chr2 (1-196)||(3783909-3784101)
chr2 (1-196)||(16162854-16163046)
chr2 (1-157)||(37687420-37687573)
chr2 (1-157)||(37702685-37702838)
chr2 (1-69)||(40191130-40191198)
chr2 (3-69)||(34278046-34278112)
chr2 (84-196)||(12718077-12718189)
[»] scaffold0260 (1 HSPs)
scaffold0260 (1-198)||(3443-3640)
[»] chr6 (28 HSPs)
chr6 (1-198)||(27290592-27290789)
chr6 (1-198)||(22477886-22478083)
chr6 (1-194)||(27303776-27303969)
chr6 (1-194)||(27278885-27279078)
chr6 (2-194)||(24862293-24862485)
chr6 (1-198)||(13300375-13300572)
chr6 (2-198)||(15425741-15425937)
chr6 (2-198)||(22936284-22936480)
chr6 (2-198)||(23858729-23858925)
chr6 (2-198)||(24306042-24306238)
chr6 (2-198)||(26998648-26998844)
chr6 (105-194)||(14143514-14143603)
chr6 (105-194)||(26787822-26787911)
chr6 (2-198)||(26987580-26987776)
chr6 (105-194)||(27196195-27196284)
chr6 (105-194)||(27252956-27253045)
chr6 (1-196)||(26916959-26917151)
chr6 (1-196)||(28161913-28162105)
chr6 (1-196)||(8893058-8893250)
chr6 (1-196)||(8904293-8904485)
chr6 (1-196)||(13522821-13523013)
chr6 (1-196)||(33375004-33375196)
chr6 (1-75)||(20159321-20159395)
chr6 (1-75)||(22173436-22173510)
chr6 (1-196)||(16748433-16748624)
chr6 (84-196)||(27631135-27631247)
chr6 (1-52)||(27361559-27361610)
chr6 (1-52)||(27451902-27451953)
[»] chr4 (11 HSPs)
chr4 (1-198)||(1898853-1899050)
chr4 (1-198)||(15286388-15286585)
chr4 (1-166)||(15222638-15222803)
chr4 (2-198)||(14663612-14663808)
chr4 (53-191)||(15392804-15392942)
chr4 (2-198)||(17012594-17012790)
chr4 (48-198)||(14236988-14237138)
chr4 (2-198)||(24593792-24593985)
chr4 (1-196)||(24461410-24461602)
chr4 (3-196)||(30752340-30752530)
chr4 (1-46)||(34190569-34190614)
[»] chr8 (13 HSPs)
chr8 (1-198)||(16282030-16282227)
chr8 (1-198)||(19659783-19659980)
chr8 (1-194)||(33244442-33244635)
chr8 (2-198)||(21374979-21375175)
chr8 (2-198)||(27610345-27610541)
chr8 (53-191)||(22082301-22082439)
chr8 (2-198)||(14556206-14556402)
chr8 (2-198)||(16276133-16276329)
chr8 (2-198)||(19686677-19686873)
chr8 (2-198)||(2138699-2138895)
chr8 (1-196)||(44562360-44562552)
chr8 (1-196)||(9353881-9354073)
chr8 (1-144)||(31353103-31353243)
[»] chr5 (15 HSPs)
chr5 (2-198)||(23890812-23891008)
chr5 (2-198)||(24950698-24950894)
chr5 (1-197)||(29889259-29889455)
chr5 (2-198)||(24689535-24689731)
chr5 (75-196)||(25197693-25197814)
chr5 (2-198)||(23719361-23719557)
chr5 (2-198)||(30933224-30933420)
chr5 (1-198)||(23000492-23000686)
chr5 (1-196)||(33776077-33776269)
chr5 (2-196)||(11547942-11548136)
chr5 (1-196)||(11325062-11325254)
chr5 (1-196)||(13185350-13185542)
chr5 (1-196)||(13441196-13441388)
chr5 (1-196)||(33876515-33876707)
chr5 (3-196)||(9549923-9550113)
[»] scaffold0124 (2 HSPs)
scaffold0124 (9-196)||(18996-19184)
scaffold0124 (1-197)||(29031-29227)
[»] scaffold0089 (3 HSPs)
scaffold0089 (2-198)||(28342-28538)
scaffold0089 (2-198)||(41550-41746)
scaffold0089 (2-198)||(48466-48662)
[»] scaffold0099 (1 HSPs)
scaffold0099 (13-198)||(49681-49870)
[»] scaffold0131 (1 HSPs)
scaffold0131 (1-178)||(40239-40416)
[»] scaffold0109 (1 HSPs)
scaffold0109 (53-191)||(20215-20353)
[»] scaffold0143 (1 HSPs)
scaffold0143 (2-198)||(25871-26067)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-196)||(1613-1808)
[»] scaffold0159 (1 HSPs)
scaffold0159 (1-45)||(37251-37295)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 15728534 - 15728337
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||     
T  15728534 tttgaaaggtggctcgtgctcgaaaagtctacgaacctgacagaatccatcagactagatcatacagaaagaagaatttggtagctgtggaagaagaaaa 15728435  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  15728434 tgttcagctccgtaccgagttagcttctctgagggaagaattggctaaggccaatgataccatgactgctctgctagccgcccaggaacaatcagcca 15728337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 15335683 - 15335489
Alignment:
Q  4 gaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatggt 103  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |     
T  15335683 gaaaggtggctcgtgctcgaaaagtctacgaacctgacagaatccatcggactagatcatacagaaagaagaatttggtagctatggaagaagaaaatgc 15335584  T
Q  104 tcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    |||||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||| |||||| ||||||||||||||||||||||||    
T  15335583 tcagctccgtaccgagttagcttctctgagggaagaattggccaaggccaatgacaccatgactgctctgctagccgcccaggaacaatcagcca 15335489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 18528931 - 18529128
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||| ||||     
T  18528931 tttgaaaggtggctcgtgctcgaaaagtctacgaacctgacagaatccatcggactagatcatacagaaagaagaataaggtagctatggaagaggaaaa 18529030  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||| |||||||||    
T  18529031 tgctcagctccgtaccgagttagcttctctgagggaagaattggctaaggccaatgacaccatgactgctctgctagccgcccaggaataatcagcca 18529128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 5649378 - 5649575
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||  |||||||| |||||||||||||||||||||||| ||||     
T  5649378 tttgaaaggtggctcgtgctcggaaagtctacgaacctgacagaatacatcagactagactatacagaaagaagaatttggtagctatggaagaggaaaa 5649477  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  5649478 tgctcagctccgtaccgaattagcttctctgagggaagaattggctaaggccaatgataccatgactgctctgctagccgcccaggaacaatcagcca 5649575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 15894424 - 15894232
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||   ||||||| |||||||| ||||||||||||||||||||      
T  15894424 ttgaaaggtggctcgtgctcggaaagtctacgaacctgacagaatacatcggactagactctacagaaagaagaattcggtagctatggaagaagaaaac 15894325  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
    | |||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||    
T  15894324 gctcagctccgtaccgagttagctactctgagggaagaattggctaaggccaatgataccatgactgctctgctagccgctcaggaacaatca 15894232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 16628202 - 16628006
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||  ||||||||||||||| ||||     
T  16628202 tttgaaaggtggctcgtgctcgaaaagtctacgaacctgacagaatccatcagactagatcatacagaaagaagaataaggtagctatggaagaggaaaa 16628103  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| | |||||||||||||||||||||||||||||| | |||||||||||| || ||||| |||||| ||||||||||||||||||||||||    
T  16628102 tgctcagctccataccgagttagcttctctgagggaagaatt-gataaggccaatgacactatgactgctctgctagccgcccaggaacaatcagcca 16628006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 4686581 - 4686778
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||| | |||||||||||||||||||||||  ||| |||||||  |||||||| | |||||||||||||||||||||| ||||     
T  4686581 tttgaaaggtggctcgtgcttggaaagtctacgaacctgacagaatatatcagactagactatacagaaaggagaatttggtagctatggaagaggaaaa 4686680  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| |||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  4686681 tgctcagctccgtaccgaattagcttctctgagggaagaattggctaaggccaataataccatgactgctctgctagccgcccaggaacaatcagcca 4686778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 4886050 - 4886246
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||   ||||||| |||||||| ||||||||||||||||||||      
T  4886050 ttgaaaggtggctcgtgctcggaaagtctacgaaccagacagaatacatcggactagactctacagaaagaagaattcggtagctatggaagaagaaaat 4886149  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| |||||| ||||||  |||||| |||||| ||||||| ||||||||||||||||    
T  4886150 gctcagctccgtaccgagttagccactctaagggaagaattggctaaggctaatgatgtcatgactgctctgctagccgctcaggaacaatcagcca 4886246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 8302979 - 8302783
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| |||||||||||||| |||||||| || |||||||||   ||||||| |||||||| |||||| |||||||||||||      
T  8302979 ttgaaaggtggctcgtgctcgaaaagtctacgaaccagacagaatacaccggactagactctacagaaagaagaattcggtagccatggaagaagaaaat 8302880  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| |||||| ||||||  |||||| |||||| ||||||| ||||||||||||||||    
T  8302879 gctcagctccgtaccgagttagccactctaagggaagaattggctaaggctaatgatgtcatgacagctctgctagccgctcaggaacaatcagcca 8302783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 31034636 - 31034444
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| || ||| |||||||| ||||      
T  31034636 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaggaaaat 31034537  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
    | |||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  31034536 gctcagctccgtaccgaattagcttctctgagggaagaattagctaaggccaatgataccatgactgctctgctagccgcccaggaacaatca 31034444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 32292491 - 32292683
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| || ||| |||||||| ||||      
T  32292491 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaggaaaat 32292590  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
    | |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  32292591 gctcagctccgtaccgaattagcttctctgagggaagaattggctaaggccaatgataccatgactgctctgctagccgcctaggaacaatca 32292683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 2 - 134
Target Start/End: Complemental strand, 16467994 - 16467862
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| ||||||||||| ||||| ||||||||||||   ||||||| |||||||||||||||||||||||||||||      
T  16467994 ttgaaaggtggctcgtgctcggaaagtttacgaacctgatagaatacatcggactagactctacagaaagaagaatttggtagctatggaagaagaaaat 16467895  T
Q  102 gttcagcttcgtaccgagttagcttctctgagg 134  Q
    | |||||| ||||||||||||||||||||||||    
T  16467894 gctcagctccgtaccgagttagcttctctgagg 16467862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 8294515 - 8294710
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| |||||||||||||| || | ||| ||||||||||||   ||||||| |||||||| || ||| ||||||||||| |      
T  8294515 ttgaaaggtggctcgtgctcggaaagtctacgaaccagatacaatacatcggactagactctacagaaagaagaattcggcagccatggaagaagagaat 8294614  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcc 197  Q
    | |||||| ||||||||||||||  || | ||||||||||||| |||||| ||||||  ||||||||||||| ||||||| || ||||||||||||    
T  8294615 gctcagctccgtaccgagttagccactttaagggaagaattggctaaggctaatgatgtcatgaccgctctgctagccgctcaagaacaatcagcc 8294710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 18049802 - 18049998
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||||| |||||||| || |||||||||   ||||||| |||||||| || ||| ||||||||||| |      
T  18049802 ttgaaaggtggctcgtgctcggaaagtttacgaaccagacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaagagaat 18049901  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||||    
T  18049902 gctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagcca 18049998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 35879306 - 35879502
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||| | |||||||| |||||||| || ||||| |||   ||||||| |||||||| || ||| ||||||||||| |      
T  35879306 ttgaaaggtggctcgtgctcggaaaatttacgaaccagacagaatacaccggacaagactctacagaaagaagaattcggcagccatggaagaagagaac 35879405  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| |||||||||||||  || || ||||||  ||||||||||||| ||||||| || |||||||||||||    
T  35879406 gctcagctccgtaccgagttagccactctaagggaagaattggccaaagctaatgatgtcatgaccgctctgctagccgctcaagaacaatcagcca 35879502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 14448635 - 14448442
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||||| |||||||| || ||||| |||   ||||||| |||||||| || ||| ||||||||||| |      
T  14448635 ttgaaaggtggctcgtgctcggaaagtttacgaaccagacagaatacaccggacaagactctacagaaagaagaattcggcagccatggaagaagagaat 14448536  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcag 195  Q
    | |||||| ||||||||||||||  |||| |||||||||||||  || || ||||||  |||||| |||||| ||||||| || ||||||||||    
T  14448535 gctcagctccgtaccgagttagccactctaagggaagaattggccaaagctaatgatgtcatgactgctctgntagccgctcaagaacaatcag 14448442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 15742792 - 15742599
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| ||  || ||||||||||| |      
T  15742792 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggcggccatggaagaagagaat 15742693  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcag 195  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  ||||||||| ||| ||||||| || ||||||||||    
T  15742692 gctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgaccgccctgctagccgctcaagaacaatcag 15742599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 4798371 - 4798175
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || ||||| |||   ||||||| ||||||||  | ||| ||||||||||| |      
T  4798371 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggacaagactctacagaaagaagaattcagcagccatggaagaagagaat 4798272  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||||    
T  4798271 gctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagcca 4798175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 4625164 - 4625356
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||  ||||||||  |||||   ||   ||||||||||||| |     
T  4625164 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagaatacagaagaaagaaaaagg---ctatggaagaagagaa 4625260  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  4625261 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 4625356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 4720173 - 4720365
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || ||||||||||||||||||||| |||| || |||  ||||||||  | |||   ||   ||||||||||||| |     
T  4720173 tttgaaaagtggctcgtgctcagaaggtctacgaacctgacagaatcgatcgaaccagagaatacagaagaaggaaaaagg---ctatggaagaagagaa 4720269  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  4720270 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 4720365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 6190858 - 6191050
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || ||||||||||||||||||||| |||| || |||  ||||||||  | |||   ||   ||||||||||||| |     
T  6190858 tttgaaaagtggctcgtgctcagaaggtctacgaacctgacagaatcgatcgaaccagagaatacagaagaaggaaaaagg---ctatggaagaagagaa 6190954  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  6190955 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 6191050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 18329216 - 18329408
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || ||||||||||||||||||||| |||| || |||  ||| ||||  | |||   ||   ||||||||||||| |     
T  18329216 tttgaaaagtggctcgtgctcagaaggtctacgaacctgacagaatcgatcgaaccagagaatatagaagaaggaaaaagg---ctatggaagaagagaa 18329312  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  18329313 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 18329408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 5712444 - 5712636
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   |||||||  | |||   ||   ||||||||||||| |     
T  5712444 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 5712540  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  5712541 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 5712636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 29150470 - 29150279
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||  |||||||| ||| ||   ||   ||||||||||||| |     
T  29150470 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagaatacagaa-gaaaaaaaagg---ctatggaagaagagaa 29150375  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||  ||||||| || |||||||||||    
T  29150374 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctactagccgctcaagaacaatcagc 29150279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 5723354 - 5723546
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| ||||  | |||   |||||||  | |||   ||   ||||||||||||| |     
T  5723354 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgacccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 5723450  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  5723451 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 5723546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 5758111 - 5757919
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| ||||  | |||   |||||||  | |||   ||   ||||||||||||| |     
T  5758111 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgacccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 5758015  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  5758014 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 5757919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 5769014 - 5768822
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| ||||  | |||   |||||||  | |||   ||   ||||||||||||| |     
T  5769014 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgacccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 5768918  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  5768917 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 5768822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 17994822 - 17994630
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || | |   |||||||  | |||   ||   ||||||||||||| |     
T  17994822 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccatagagtacagaagaaggaaaaagg---ctatggaagaagagaa 17994726  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  17994725 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 17994630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22389273 - 22389205
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaa 69  Q
    |||||||||||||||||||||  || ||||||||||||||||||||| |||| || |||  ||||||||    
T  22389273 tttgaaaagtggctcgtgctcagaaggtctacgaacctgacagaatcgatcgaaccagagaatacagaa 22389205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 50135707 - 50135619
Alignment:
Q  84 gctatggaagaagaaatggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctct 172  Q
    |||||||||||||| |  | ||||||||| ||||||||||| ||||| | ||| ||||||| ||| || ||||||  |||||| |||||    
T  50135707 gctatggaagaagagaacgctcagcttcgcaccgagttagcctctctaaaggaggaattggctaaagctaatgatgtcatgactgctct 50135619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 20459685 - 20459881
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  20459685 tttgaaaggtggctcgtgctcgaaaagtctacgaacctgacagaatccatcggactagatcatacagaaggaagaatttggtagctatggaagaagaaaa 20459784  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcc 197  Q
     | |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||||||||||||    
T  20459785 tgctcagctccgtaccgagttagcttctctgagggaagaattggctaaggccaatgacaccatgactgctctgctagccgcccaggaacaatcagcc 20459881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 20341317 - 20341120
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  20341317 tttgaaaggtggctcgtgctcgaaaagtctacgaacctgacaaaatccatcggactagatcatacagaaagaagaatttggtagctatggaagaagaaaa 20341218  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| |||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| |||||| ||||||||||||||||||||||||    
T  20341217 tgctcagctccgtaccgagttagcttctctgagggaagaattggctaaggctaataataccatgactgctctgctagccgcccaggaacaatcagcca 20341120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 28151638 - 28151831
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||   ||||||| |||||||| || ||| |||||||| ||||     
T  28151638 tttgaaaggtggctcgtgctcggaaagtctacgaacctgacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaggaaaa 28151737  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
     | |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  28151738 tgctcagctccgtaccgaattagcttctctgagggaagaattggctaaggccaatgataccatgactgctctgctagccgcccaggaacaatca 28151831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 43 - 198
Target Start/End: Complemental strand, 16209660 - 16209505
Alignment:
Q  43 gaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatggttcagcttcgtaccgagttagcttctctgagggaagaatt 142  Q
    |||| ||||||||||||  |||||||| |||||||||||||||||||||||| ||||  | |||||| |||||||||||||||||||| |||||||||||    
T  16209660 gaatacatcggactagactatacagaaagaagaatttggtagctatggaagaggaaaatgctcagctccgtaccgagttagcttctctaagggaagaatt 16209561  T
Q  143 ggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    || ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  16209560 ggctaaggccaatgataccatgactgctctgctagccgcccaggaacaatcagcca 16209505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0558
Description:

Target: scaffold0558; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 504 - 307
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||     
T  504 tttgaaaggtggctcatgctcgaaaagtctacgaacctgacagaatccatcggactagatcatacagtaagaagaatttggtagctatggaagaagaaaa 405  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||||||||||||    
T  404 tgttcagctccgtaccgagttagcttctctgagggaagaattggctaaggccaatgataccatgactgctctgctagctgcccaggaacaatcagcca 307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 16451559 - 16451362
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||     
T  16451559 tttgaaaggtggctcgtgctcgaaaagtctacgaacctgacagaatccatcggactagatcatatagaaagaagaatttggaagctatggaagaagaaaa 16451460  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     || ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  16451459 tgtgcagctccgtaccgagttagcttctctgagggaagaattggctaaggccaatgataccatgactgctctgctagccgcccaggaacaatcagcca 16451362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 16039905 - 16040102
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||     
T  16039905 tttgaaaggtggctcgtgcttggaaagtctacgaacctgacagaatccatcggactagattacacagaaagaagaatttggtagctatggaagaagaaaa 16040004  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||| ||||||||||||||||||||||||    
T  16040005 tgctcagctccgtaccgagttagcttctctgagggaagaattggctaaggccaatgacaccatgactgctctgctagccgcccaggaacaatcagcca 16040102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 2109362 - 2109177
Alignment:
Q  9 gtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatggttcagc 108  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||  |||||||    
T  2109362 gtggctcgtgctcgaaaaatctacgaacctgacagaatccatcggactagattgtacagaaagaagaatttggtagctatggaagaagaaaatgttcagc 2109263  T
Q  109 ttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
    | |||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| |||||| ||||||||||||||||||||    
T  2109262 tccgtaccgagttaacttctctgagggaagaattggctaaggccaatgacaccatgactgctctgctagccgcccaggaacaatca 2109177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 16519978 - 16519782
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||   ||||||| |||||||| ||||||||||||||||||||      
T  16519978 ttgaaaggtggctcgtgctcggaaagtctatgaacctgacagaatacatcggactagactctacagaaagaagaattcggtagctatggaagaagaaaat 16519879  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||    
T  16519878 gctcagctccgtaccgagttagctactctaagggaagaattggctaaggccaatgataccatgactgctctgctagccgctcaggaacaatcagcca 16519782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 16504942 - 16504746
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||   ||||||| |||||||| ||||||||||||||||||||      
T  16504942 ttgaaaggtggctcgtgctcggaaagtctacgaacctgacagaatacatcggactagactctacagaaagaagaattcggtagctatggaagaagaaaat 16504843  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||  ||||  ||||| | ||||||||||||||||    
T  16504842 gctcagctccgtaccgagttagctactctaagggaagaattggctaaggccaatgataccatgactactcttctagccactcaggaacaatcagcca 16504746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 18540578 - 18540770
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| || ||| |||||||| ||||      
T  18540578 ttgaaaggtggctcgtgctcgaaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaggaaaat 18540677  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
    | |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  18540678 gctcagctccgtaccgaattagcttctctgagggaagaattggctaaggccaatgataccatgactgctctgctagccgcccaggaacaatca 18540770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 26484473 - 26484665
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| || ||| |||||||| ||||      
T  26484473 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaggaaaat 26484572  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
    | |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  26484573 gctcagctccgtaccgaattagcttctctgagggaagaattggctaaggccaatgataccatgactgctctgctagccgcctaggaacaatca 26484665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 2775138 - 2775330
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| |  |||||||||   ||||||| |||||||| || ||| |||||||| ||||      
T  2775138 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacgccggactagactctacagaaagaagaattcggcagccatggaagaggaaaat 2775237  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
    | |||||| |||||||| ||||||||| ||||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  2775238 gctcagctccgtaccgaattagcttctatgagggaagaattagctaaggccaatgataccatgactgctctgctagccgcccaggaacaatca 2775330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 10918428 - 10918232
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaaga-aat 100  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || ||||||| |   ||||||| |||||||| || ||| ||||||||||| |||    
T  10918428 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaattcaccggactaaactctacagaaagaagaattcggcagccatggaagaagagaat 10918329  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | || |||| ||||||||||||||  |||| ||||||||||||| |||||| ||||||| ||||||||||||| ||||||| || |||||||||||||    
T  10918328 gctt-agctccgtaccgagttagccactctaagggaagaattggctaaggctaatgatatcatgaccgctctgctagccgctcaagaacaatcagcca 10918232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 2153152 - 2153346
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| || ||| ||||||||||| |      
T  2153152 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaagagaat 2153251  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  2153252 gctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 2153346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 39211385 - 39211195
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   |||| ||  | |||   ||   ||||||||||||| |     
T  39211385 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacataagaaggaaaaagg---ctatggaagaagagaa 39211289  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
     | |||||| |||||||| ||| ||||||||||||||||||||| |||||||||||| |||||||| |||||| ||||||||||||||||||||    
T  39211288 cgctcagctccgtaccgaattaacttctctgagggaagaattggctaaggccaatgacaccatgactgctctgctagccgcccaggaacaatca 39211195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 11426339 - 11426145
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||| | |||||||| |||||||| || ||||| |||   ||||||| |||||||| || ||| ||||||||||| |      
T  11426339 ttgaaaggtggctcgtgctcggaaaatttacgaaccagacagaatacaccggacaagactctacagaaagaagaattcggcagccatggaagaagagaac 11426240  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
    | |||||| ||||||||||||||  |||| |||||||||||||  || || ||||||  |||||| || ||| ||||||| || |||||||||||    
T  11426239 gctcagctccgtaccgagttagccactctaagggaagaattggccaaagctaatgatgtcatgactgccctgctagccgctcaagaacaatcagc 11426145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 5126574 - 5126768
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||| |||||||||||||| |||| || |||  ||||||||  | |||   ||   ||||||||||||| |     
T  5126574 tttgaaaagtggctcgtgctcagaaggtctacaaacctgacagaatcgatcgaaccagagaatacagaagaaggaaaaagg---ctatggaagaagagaa 5126670  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||||    
T  5126671 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagcca 5126768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 31089347 - 31089155
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || ||||||||||| || |||||| |||| || |||  ||||||||  | |||   ||   ||||||||||||| |     
T  31089347 tttgaaaagtggctcgtgctcagaaggtctacgaacccgatagaatcgatcgaaccagagaatacagaagaaggaaaaagg---ctatggaagaagagaa 31089251  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  31089250 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 31089155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 45732720 - 45732912
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   |||||||  | |||   ||   ||||||||||||| |     
T  45732720 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 45732816  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  45732817 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 45732912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 5120060 - 5120128
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaa 69  Q
    |||||||||||||||||||||  || ||||||||||||||||||||| |||| || |||  ||||||||    
T  5120060 tttgaaaagtggctcgtgctcagaaggtctacgaacctgacagaatcgatcgaaccagagaatacagaa 5120128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 9617233 - 9617386
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||  |||| || |||  ||||||||  |||||   |   |||||||||||||| |     
T  9617233 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaattgatcgaaccagagaatacagaagaaagaaaagg---gctatggaagaagagaa 9617329  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatga 157  Q
     | ||||||||| ||||||||||| ||||| | ||| ||||||| ||| || |||||    
T  9617330 cgctcagcttcgcaccgagttagcctctctaaaggaggaattggctaaagctaatga 9617386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 11440222 - 11440334
Alignment:
Q  84 gctatggaagaagaaatggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgccc 183  Q
    |||||||||||||| |  | ||||||||| ||||| |||||  |||| ||||||||||||| ||| || |||||   |||||| |||||| |||| || |    
T  11440222 gctatggaagaagagaacgctcagcttcgcaccgaattagccactctaagggaagaattggctaaagctaatgacgtcatgactgctctgctagctgctc 11440321  T
Q  184 aggaacaatcagc 196  Q
    | || ||||||||    
T  11440322 aagagcaatcagc 11440334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 21704828 - 21704631
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  21704828 tttgaaaggtgactcgtgctcgaaaagtctacgaacctcacagaatccatcggactagatcatacagaaagaagaatttggtagctatggaagaagaaaa 21704729  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  21704728 tgctcagctccgtaccgagttagcttctctgagggaagaattggctaaggccaatgataccatgactgctctgctagccgcccaggaacaatcagcca 21704631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 34304274 - 34304077
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||  |||||||| |||||||||||||||||||||||| ||||     
T  34304274 tttgaaaggtggctcgtgctcggaaagtctacgaacctgacagaatacatcagactagactatacagaaagaagaatttggtagctatggaagaggaaaa 34304175  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  34304174 tgctcagctccgtaccgaattagcttctctgagggaagaattggctaaggccaatgataccatgactgctctgctagccgcccaggaacaatcagcca 34304077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 19458067 - 19457870
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| || |||||||  ||||||||||||||||||||     
T  19458067 tttgaaaggtggctcgtgctcgaaaagtctacgaacctgacagaatccatcagactagatcatacaaaaagaagaataaggtagctatggaagaagaaaa 19457968  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| |||||||||||||||||||||||||||||||||| |||| |||| || |||||||| |||||||| || |||||||||||||||||||    
T  19457967 tgctcagctccgtaccgagttagcttctctgagggaagaattggctaagaccaacgacaccatgactgctctgttggctgcccaggaacaatcagcca 19457870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 27436109 - 27435913
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||   ||||||| ||||||||  |||||||||||||||||||      
T  27436109 ttgaaaggtggctcgtgctcggaaagtctacgaacctgacagaatacatcggactagactctacagaaagaagaattcagtagctatggaagaagaaaac 27436010  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||    
T  27436009 gctcagctccgtaccgagttagctactctcagggaagaattggctaaggccaatgataccatgactgctctgctagccgctcaggaacaatcagcca 27435913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 27117959 - 27118155
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| || ||| |||||||| ||||      
T  27117959 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaggaaaat 27118058  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  27118059 gctcagctccgtaccgaattagcttctctgagggaagaattggctaaggccaatgataccatgactgctctgctagccgcccaggaacaatcagcca 27118155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 20836493 - 20836689
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| |||||| |||||||||||||      
T  20836493 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggtagccatggaagaagaaaat 20836592  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| |||||| ||||||  |||||| |||||| ||||||| || |||||||||||||    
T  20836593 gctcagctccgtaccgagttagccactctaagggaagaattggctaaggctaatgatgtcatgactgctctgctagccgctcaagaacaatcagcca 20836689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 12654117 - 12654313
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| |||||| |||||||||||||      
T  12654117 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggtagccatggaagaagaaaat 12654216  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||| ||||| |||||| ||||||  |||||| |||||| ||||||| || |||||||||||||    
T  12654217 gctcagctccgtaccgagttagccactctaagggaagtattggctaaggctaatgatgtcatgactgctctgctagccgctcaagaacaatcagcca 12654313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 53 - 191
Target Start/End: Original strand, 27391638 - 27391776
Alignment:
Q  53 gactagatcatacagaatgaagaatttggtagctatggaagaagaaatggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggcc 152  Q
    |||||||||||||| ||  | ||||  |||||| |||||||||||||  | |||||| |||||||||||||||||||||||||||||||||| |||||||    
T  27391638 gactagatcatacaaaagaaggaataaggtagccatggaagaagaaaatgctcagctccgtaccgagttagcttctctgagggaagaattggctaaggcc 27391737  T
Q  153 aatgataccatgaccgctctgttagccgcccaggaacaa 191  Q
    ||||| |||||||| |||||| |||||||||||||||||    
T  27391738 aatgacaccatgactgctctgctagccgcccaggaacaa 27391776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 23137059 - 23136863
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| || ||| ||||||||||| |      
T  23137059 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaagagaat 23136960  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  ||||||||||||| ||||||| || |||||||||||||    
T  23136959 gctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgaccgctctgctagccgctcaagaacaatcagcca 23136863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 28880789 - 28880985
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| || ||| ||||||||||| |      
T  28880789 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaagagaat 28880888  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  ||||||||||||| ||||||| || |||||||||||||    
T  28880889 gctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgaccgctctgctagccgctcaagaacaatcagcca 28880985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 31892314 - 31892122
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || ||||||||||||||||||||| |||| || |||  ||||||||  | |||   ||   ||||||||||||| |     
T  31892314 tttgaaaagtggctcgtgctcagaaggtctacgaacctgacagaatcgatcgaaccagagaatacagaagaaggaaaaagg---ctatggaagaagagaa 31892218  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  31892217 cgctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 31892122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 34156266 - 34156458
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||||| |||| |||| || |||  ||||||||  | |||   ||   ||||||||||||| |     
T  34156266 tttgaaaagtggctcgtgctcagaaggtctacgaacctgacaaaatcgatcgaaccagagaatacagaagaaggaaaaagg---ctatggaagaagagaa 34156362  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  34156363 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 34156458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 3783909 - 3784101
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   |||||||  | |||   ||   ||||||||||||| |     
T  3783909 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 3784005  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  3784006 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 3784101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 16162854 - 16163046
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| ||||  | |||   |||||||  | |||   ||   ||||||||||||| |     
T  16162854 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgatccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 16162950  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  16162951 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 16163046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 37687573 - 37687420
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||  ||||||||  |||||   |   |||||||||||||| |     
T  37687573 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagaatacagaagaaagaaaagg---gctatggaagaagagaa 37687477  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatga 157  Q
     | ||||||||| ||||||||||| ||||| | ||| ||||||| ||| || |||||    
T  37687476 cgctcagcttcgcaccgagttagcctctctaaaggaggaattggctaaagctaatga 37687420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 37702838 - 37702685
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||  ||||||||  |||||   |   |||||||||||||| |     
T  37702838 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagaatacagaagaaagaaaagg---gctatggaagaagagaa 37702742  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatga 157  Q
     | ||||||||| ||||||||||| ||||| | ||| ||||||| ||| || |||||    
T  37702741 cgctcagcttcgcaccgagttagcctctctaaaggaggaattggctaaagctaatga 37702685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 40191198 - 40191130
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaa 69  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||  ||||||||    
T  40191198 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagaatacagaa 40191130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 34278046 - 34278112
Alignment:
Q  3 tgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaa 69  Q
    |||||||||||||||||||  || |||||||||||||| |||||| |||| || |||  ||||||||    
T  34278046 tgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagaatacagaa 34278112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 196
Target Start/End: Complemental strand, 12718189 - 12718077
Alignment:
Q  84 gctatggaagaagaaatggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgccc 183  Q
    |||||||||||||| |  | ||||||||| ||||| |||||  |||| ||||||||||||| ||| || |||||   |||||| |||||| |||| || |    
T  12718189 gctatggaagaagagaacgctcagcttcgcaccgaattagccactctaagggaagaattggctaaagctaatgacgtcatgactgctctgctagctgctc 12718090  T
Q  184 aggaacaatcagc 196  Q
    | || ||||||||    
T  12718089 aagagcaatcagc 12718077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 3640 - 3443
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  3640 tttgaaaggtggctcgtgctcgaaaagtctacgaacctgacaaaatccatcggactagatcatacagaaagaagaatttggtagctatggaagaagaaaa 3541  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| |||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| |||||| ||||||||||||||||||||||||    
T  3540 tgctcagctccgtaccgagttagcttctctgagggaagaattggctaaggctaataataccatgactgctctgctagccgcccaggaacaatcagcca 3443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 27290789 - 27290592
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||     
T  27290789 tttgaaaggtggcttgtgctcgaagagtctacgaacttgacagaatccatcggactagatcataaagaaagaagaatttggtagctatggaagaagaaaa 27290690  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  27290689 tgttcagctccgtgccgagttagcttctctgagggaagaattggttaaggccaatgataccatgactgctctgctagccgcccaggaacaatcagcca 27290592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 22478083 - 22477886
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||     
T  22478083 tttgaaaggtggctcgtgctcgaaaaatctacgaacctgacagaatccatcggactagattatacagaaagaagaatttggtagctatggaagaagaaaa 22477984  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| |||||||||||||||||||| |||||| |||||| |||||||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  22477983 tgctcagctccgtaccgagttagcttctcttagggaataattggctaaggccaatgataccttgactgctctgctagccgcccaggaacaatcagcca 22477886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 27303969 - 27303776
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||| |     
T  27303969 tttgaaaggtggctcgtgctcgaaaagtctacgaacctggcagaatccatcggactagattgtacagaaagaagaatttggtagctatggaagaagagaa 27303870  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
       ||||||||| |||||||| ||| |||| ||||||||  ||| ||||||| ||||||||||||| |||||| |||| || || |||||||||    
T  27303869 cactcagcttcgcaccgagttggctactctaagggaagagctggctaaggcccatgataccatgactgctctgctagctgctcaagaacaatca 27303776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 27279078 - 27278885
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| |||||||||||||| | ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||| |     
T  27279078 tttgaaaggtggctcgtgctcgaaaagtctacgaacccggcagaatccatcggactagattgtacagaaagaagaatttggtagctatggaagaagagaa 27278979  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
       ||||||||| |||||||| ||| |||| ||||||||  ||| ||||||| ||||||||||||| |||||| |||| || || |||||||||    
T  27278978 cactcagcttcgcaccgagttggctactctaagggaagagctggctaaggcccatgataccatgactgctctgctagctgctcaagaacaatca 27278885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 24862293 - 24862485
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||||| |||||||| || |||||||||   ||||||| |||||||| |||||| |||||||||||||      
T  24862293 ttgaaaggtggctcgtgctcggaaagtttacgaaccagacagaatacaccggactagactctacagaaagaagaattcggtagccatggaagaagaaaat 24862392  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| |||||| ||||||  |||||| |||||| ||||||| || |||||||||    
T  24862393 gctcagctccgtaccgagttagccactctaagggaagaattggctaaggctaatgatgtcatgactgctctgctagccgctcaagaacaatca 24862485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 13300572 - 13300375
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| || ||| ||||||||||| |     
T  13300572 tttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaagagaa 13300473  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  ||||||||||||| ||||||| || |||||||||||||    
T  13300472 tgctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgaccgctctgctagccgctcaagaacaatcagcca 13300375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 15425937 - 15425741
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| || ||| ||||||||||| |      
T  15425937 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaagagaat 15425838  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| |||||||||||||  |||||||||| |  ||||||| || |||||||||||||    
T  15425837 gctcagctccgtaccgagttagccactctaagggaagaattggctaaggccaatgatgtcatgaccgctttactagccgctcaagaacaatcagcca 15425741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 22936480 - 22936284
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||| | ||||||   |||||||| || |||||||||   || |||| |||||||| || ||| |||||||||||||      
T  22936480 ttgaaaggtggctcgtgctcggaaaatttacgaatgagacagaatacaccggactagactctatagaaagaagaattcggcagccatggaagaagaaaat 22936381  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  |||||| |||||| ||||||| ||||||||||||||||    
T  22936380 gctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgactgctctgctagccgctcaggaacaatcagcca 22936284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 23858925 - 23858729
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||| | ||||||   |||||||| || |||||||||   || |||| |||||||| || ||| |||||||||||||      
T  23858925 ttgaaaggtggctcgtgctcggaaaatttacgaatgagacagaatacaccggactagactctatagaaagaagaattcggcagccatggaagaagaaaat 23858826  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  |||||| |||||| ||||||| ||||||||||||||||    
T  23858825 gctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgactgctctgctagccgctcaggaacaatcagcca 23858729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 24306238 - 24306042
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| ||  |||| |||   ||||||| |||||||| || ||| ||||||||||| |      
T  24306238 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacactggacaagactctacagaaagaagaattcggcagccatggaagaagagaat 24306139  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| |||||||||||||  ||||| ||||||  ||||||||||||| ||||||| || |||||||||||||    
T  24306138 gctcagctccgtaccgagttagccactctaagggaagaattggccaaggctaatgatgtcatgaccgctctgctagccgctcaagaacaatcagcca 24306042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 26998648 - 26998844
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || ||||| |||   ||||||| |||||||| || ||| ||||||||||| |      
T  26998648 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggacaagactctacagaaagaagaattcggcagccatggaagaagagaat 26998747  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  |||||| ||| || ||||||| || |||||||||||||    
T  26998748 gctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgactgctatgctagccgctcaagaacaatcagcca 26998844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 14143603 - 14143514
Alignment:
Q  105 cagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||||| |||||| |||||||| |||||| ||||||||||||||||||||    
T  14143603 cagctccgtaccgagttaacttctctgagggaagaattggctaaggtcaatgacaccatgactgctctgctagccgcccaggaacaatca 14143514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 26787822 - 26787911
Alignment:
Q  105 cagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||||| |||||| |||||||| |||||| ||||||||||||||||||||    
T  26787822 cagctccgtaccgagttaacttctctgagggaagaattggctaaggtcaatgacaccatgactgctctgctagccgcccaggaacaatca 26787911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 26987580 - 26987776
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaaga-aat 100  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || ||||  |||   ||||||| |||||||| || ||| ||||||||||| |||    
T  26987580 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggataagactctacagaaagaagaattcggcagccatggaagaagagaat 26987679  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | || |||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||||    
T  26987680 gctt-agctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagcca 26987776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 27196195 - 27196284
Alignment:
Q  105 cagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||||| |||||| |||||||| |||||| ||||||||||||||||||||    
T  27196195 cagctccgtaccgagttaacttctctgagggaagaattggctaaggtcaatgacaccatgactgctctgctagccgcccaggaacaatca 27196284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 27253045 - 27252956
Alignment:
Q  105 cagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||||| |||||| |||||||| |||||| ||||||||||||||||||||    
T  27253045 cagctccgtaccgagttaacttctctgagggaagaattggctaaggtcaatgacaccatgactgctctgctagccgcccaggaacaatca 27252956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 26916959 - 26917151
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || ||||||||||||||||||||| |||| || |||  ||||||||  | |||   ||   ||||||||||||| |     
T  26916959 tttgaaaagtggctcgtgctcagaaggtctacgaacctgacagaatcgatcgaaccagagaatacagaagaaggaaaaagg---ctatggaagaagagaa 26917055  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  26917056 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 26917151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 28161913 - 28162105
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || ||||||||||||||||||||| |||| || |||  ||||||||  | |||   ||   ||||||||||||| |     
T  28161913 tttgaaaagtggctcgtgctcagaaggtctacgaacctgacagaatcgatcgaaccagagaatacagaagaaggaaaaagg---ctatggaagaagagaa 28162009  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  28162010 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 28162105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 8893250 - 8893058
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   |||||||  | |||   ||   ||||||||||||| |     
T  8893250 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 8893154  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  8893153 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 8893058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 8904485 - 8904293
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   |||||||  | |||   ||   ||||||||||||| |     
T  8904485 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 8904389  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  8904388 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 8904293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 13523013 - 13522821
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   |||||||  | |||   ||   ||||||||||||| |     
T  13523013 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 13522917  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  13522916 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 13522821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 33375196 - 33375004
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   |||||||  | |||   ||   ||||||||||||| |     
T  33375196 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 33375100  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  33375099 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 33375004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 20159321 - 20159395
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaaga 75  Q
    ||||||| ||||||| |||||| || |||||||||||||||||||||||||| ||| | |||||||||| |||||    
T  20159321 tttgaaaggtggctcatgctcggaaggtctacgaacctgacagaatccatcgtactcggtcatacagaaagaaga 20159395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 22173510 - 22173436
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaaga 75  Q
    ||||||| ||||||| |||||| || |||||||||||||||||||||||||| ||| | |||||||||| |||||    
T  22173510 tttgaaaggtggctcatgctcggaaggtctacgaacctgacagaatccatcgtactcggtcatacagaaagaaga 22173436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 16748433 - 16748624
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || ||||||||||||||||||||| |||| || |||  ||||||||  | |||   |   |||||||||||||| |     
T  16748433 tttgaaaagtggctcgtgctcagaaggtctacgaacctgacagaatcgatcgaaccagagaatacagaagaaggaaaaag---gctatggaagaagagaa 16748529  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||  ||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  16748530 cgctcagctccgta-agagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 16748624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 196
Target Start/End: Complemental strand, 27631247 - 27631135
Alignment:
Q  84 gctatggaagaagaaatggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgccc 183  Q
    |||||||||||||| |  | |||||| || |||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| |    
T  27631247 gctatggaagaagagaacgctcagctccgcaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctc 27631148  T
Q  184 aggaacaatcagc 196  Q
    | || ||||||||    
T  27631147 aagagcaatcagc 27631135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 27361610 - 27361559
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcg 52  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| ||||    
T  27361610 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcg 27361559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 27451953 - 27451902
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcg 52  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| ||||    
T  27451953 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcg 27451902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 1898853 - 1899050
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||     
T  1898853 tttgaaaggtggctcgtgctcggaaaatctacgaacctgacagaatccatcggactagattatacagaaagaagaatttggtagctatggaagaggaaaa 1898952  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     |  ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  1898953 tgcacagctccgtaccgagttagcttctctgagggaagaattggctaaggccaatgataccatgactgctctgctagccgcccaggaacaatcagcca 1899050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 15286585 - 15286388
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||  ||||| ||||||||||||||     
T  15286585 tttgaaaggtggctcgtgctcgaaaagtctacgaacctgacagaatccatcagactagatcatacagaaagaagaataaggtagttatggaagaagaaaa 15286486  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| |||||||||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||| || |||||||||||||||||||    
T  15286485 tgctcagctccgtaccgagttagcttctctgagggaagaattggctaaggccaacgacaccatgactgctctgttggctgcccaggaacaatcagcca 15286388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 15222638 - 15222803
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  15222638 tttgaaaggtggctcgtgctcggaaagtctatgaacctgacagaatccatcggactagatcatacagaaagaagaatttggtagctatggaagaagaaaa 15222737  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgac 166  Q
     |||||||| |||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||    
T  15222738 tgttcagctccgtaccgagttagcttctctaagggaagaattggctaaagccaatgataccatgac 15222803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 14663612 - 14663808
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||||| || ||||| || |||||||||   ||||||| |||||||| |||||| |||||||||||||      
T  14663612 ttgaaaggtggctcgtgctcggaaagtttacgaaccagatagaatacaccggactagactctacagaaagaagaattcggtagccatggaagaagaaaat 14663711  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| |||||| ||||||  |||||| |||||| ||||||| || |||||||||||||    
T  14663712 gctcagctccgtaccgagttagccactctaagggaagaattggctaaggctaatgatgtcatgactgctctgctagccgctcaagaacaatcagcca 14663808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 15392942 - 15392804
Alignment:
Q  53 gactagatcatacagaatgaagaatttggtagctatggaagaagaaatggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggcc 152  Q
    |||||||||||||||||  | ||||  |||||| |||||||||||||  | |||||| |||||||||||||||||||||||||||||||||| |||||||    
T  15392942 gactagatcatacagaagaaggaataaggtagccatggaagaagaaaatgctcagctccgtaccgagttagcttctctgagggaagaattggctaaggcc 15392843  T
Q  153 aatgataccatgaccgctctgttagccgcccaggaacaa 191  Q
    ||||| |||||||| |||||| ||||| |||||||||||    
T  15392842 aatgagaccatgactgctctgctagccacccaggaacaa 15392804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 17012594 - 17012790
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| || ||| ||||||||||| |      
T  17012594 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaagagaat 17012693  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  ||||||||||||| ||||||| || |||||||||||||    
T  17012694 gctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgaccgctctgctagccgctcaagaacaatcagcca 17012790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 48 - 198
Target Start/End: Complemental strand, 14237138 - 14236988
Alignment:
Q  48 catcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatggttcagcttcgtaccgagttagcttctctgagggaagaattggtta 147  Q
    |||| ||||||||||||||||| |||||||  ||||||||||||||| ||||  | |||||| |||||||||||||||||||||||||||||||||| ||    
T  14237138 catcagactagatcatacagaaggaagaataaggtagctatggaagaggaaaatgctcagctccgtaccgagttagcttctctgagggaagaattggcta 14237039  T
Q  148 aggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    ||||  |||| || ||||  |||||| | ||||||||||||||| ||||||    
T  14237038 aggctcatgacactatgattgctctgctggccgcccaggaacaagcagcca 14236988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 24593985 - 24593792
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||  || ||||||||||||||||||||| |||| || |||  ||||||||  | |||   ||   ||||||||||||| |      
T  24593985 ttgaaaggtggctcgtgctcagaaggtctacgaacctgacagaatcgatcgaaccagagaatacagaagaaggaaaaagg---ctatggaagaagagaac 24593889  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||||    
T  24593888 gctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagcca 24593792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 24461602 - 24461410
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   ||||||| |||| |   ||  |||||||||||||| |     
T  24461602 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacagaa-gaaggaaaagg--gctatggaagaagagaa 24461506  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | ||||||||| |||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  24461505 cgctcagcttcgcaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 24461410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 196
Target Start/End: Original strand, 30752340 - 30752530
Alignment:
Q  3 tgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatgg 102  Q
    |||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   ||||||| |||| |   ||  |||||||||||||| |  |    
T  30752340 tgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacagaa-gaaggaaaagg--gctatggaagaagagaacg 30752436  T
Q  103 ttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     ||||||||| ||||| |||||  |||| ||||| ||||||| ||| || |||||   |||||| |||||| |||| || || || ||||||||    
T  30752437 ctcagcttcgcaccgaattagccactctaagggaggaattggctaaagctaatgacgtcatgactgctctgctagctgctcaagagcaatcagc 30752530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34190614 - 34190569
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaat 46  Q
    |||||||||||||||||||||  || |||||||||||||| |||||    
T  34190614 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaat 34190569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 16282030 - 16282227
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||   |||| || |||||||||||||||||||||||||||||     
T  16282030 tttgaaaggtggctcgtgctcggaaagtctacgaacctgacagaatacatcgaactagactctacataaagaagaatttggtagctatggaagaagaaaa 16282129  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  16282130 tgctcagctccgtaccgagttagcttctctgagggaagaattggctaaggccaatgataccatgactgctctgctagccgcccaggaacaatcagcca 16282227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 19659980 - 19659783
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||  ||||| || |||||||||||||||||||||||| ||||     
T  19659980 tttgaaaggtggctcgtgctcggaaagtctacgaacctgacagaatacatcagactagactatacataaagaagaatttggtagctatggaagaggaaaa 19659881  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  19659880 tgctcagctccgtaccgaattagcttctctgagggaagaattggctaaggccaatgataccatgactgctctgctagccgcccaggaacaatcagcca 19659783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 33244442 - 33244635
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||| |||| |||||||  |||||||| |||||||||||||||||||||||||||||     
T  33244442 tttgaaaggtggctcgtgctcggaaagtctacaaacctgacagaatacatcagactagactatacagaaagaagaatttggtagctatggaagaagaaaa 33244541  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatca 194  Q
     | |||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  33244542 tgctcagctccgtaccgagttagcttctctgagggaagaattggctaaggccaataataccatgactgctctgctagccgcccaggaacaatca 33244635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 21375175 - 21374979
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||||| |||||||| || ||||| |||   ||||||| |||||||| || ||| ||||||||||| |      
T  21375175 ttgaaaggtggctcgtgctcggaaagtttacgaaccagacagaatacaccggacaagactctacagaaagaagaattcggcagccatggaagaagagaac 21375076  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  |||||| |||||| ||||||||||||||||||||||||    
T  21375075 gctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgactgctctgctagccgcccaggaacaatcagcca 21374979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 27610541 - 27610345
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||||| |||||||| || ||||| |||   ||||||| |||||||| || ||| ||||||||||| |      
T  27610541 ttgaaaggtggctcgtgctcggaaagtttacgaaccagacagaatacaccggacaagactctacagaaagaagaattcggcagccatggaagaagagaac 27610442  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||||||||||||||||| ||| || ||||||  ||||||||||||| ||||||| || |||||||||||||    
T  27610441 gctcagctccgtaccgagttagccactctgagggaagaattggctaaagctaatgatgtcatgaccgctctgctagccgctcaagaacaatcagcca 27610345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 22082439 - 22082301
Alignment:
Q  53 gactagatcatacagaatgaagaatttggtagctatggaagaagaaatggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggcc 152  Q
    |||||||||||||||||  | ||||  |||||| |||||||||||||  | |||||| |||||||||||||||||| ||||||||||||||| |||||||    
T  22082439 gactagatcatacagaagaaggaataaggtagccatggaagaagaaaatgctcagctccgtaccgagttagcttctttgagggaagaattggctaaggcc 22082340  T
Q  153 aatgataccatgaccgctctgttagccgcccaggaacaa 191  Q
    ||||| |||||||| |||||| |||||||||||||||||    
T  22082339 aatgacaccatgactgctctgctagccgcccaggaacaa 22082301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 14556206 - 14556402
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || ||||| |||   ||||||| |||||||| || ||| ||||||||||| |      
T  14556206 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggacaagactctacagaaagaagaattcggcagccatggaagaagagaat 14556305  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| |||||| ||||||  ||||||||||||| ||||||| || |||||||||||||    
T  14556306 gctcagctccgtaccgagttagccactctaagggaagaattggctaaggctaatgatgtcatgaccgctctgctagccgctcaagaacaatcagcca 14556402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 16276133 - 16276329
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| || ||| ||||||||||| |      
T  16276133 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaagagaat 16276232  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  ||||||||||||| ||||||| || |||||||||||||    
T  16276233 gctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgaccgctctgctagccgctcaagaacaatcagcca 16276329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 19686677 - 19686873
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||||| |||||||| || |||||||||   ||||||| |||||||| |||||| ||||||||||| |      
T  19686677 ttgaaaggtggctcgtgctcggaaagtttacgaaccagacagaatacaccggactagactctacagaaagaagaattcggtagccatggaagaagagaat 19686776  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| |||||||| || | |||||| ||||||  |||||| |||||| ||||||| || |||||||||||||    
T  19686777 gctcagctccgtaccgagttagccactctaagggaagagttagctaaggctaatgatgtcatgactgctctgctagccgctcaagaacaatcagcca 19686873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 2138895 - 2138699
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | || ||||| || ||||| |||   ||||||| |||||||| |||||| ||||||||||| |      
T  2138895 ttgaaaggtggctcgtgctcggaaagtttacgaatcagatagaatacaccggacaagactctacagaaagaagaattcggtagccatggaagaagagaat 2138796  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| |||||| ||||||  |||||| |||||| ||||||| || |||||||||||||    
T  2138795 gctcagctccgtaccgagttagccactctaagggaagaattggctaaggctaatgatgtcatgactgctctgctagccgctcaagaacaatcagcca 2138699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 44562360 - 44562552
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   ||||||| |||| |   ||  |||||||||||||| |     
T  44562360 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacagaa-gaaggaaaagg--gctatggaagaagagaa 44562456  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | ||||||||| |||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  44562457 cgctcagcttcgcaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 44562552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 9353881 - 9354073
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   |||||||  | |||   ||   ||||||||||||| |     
T  9353881 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 9353977  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  9353978 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 9354073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 31353103 - 31353243
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   |||||||  |||||   |   |||||||||||||| |     
T  31353103 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacagaagaaagaaaagg---gctatggaagaagagaa 31353199  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattgg 144  Q
     | ||||||||| ||||||||||| ||||| | ||| |||||||    
T  31353200 cgctcagcttcgcaccgagttagcctctctaaaggaggaattgg 31353243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 23890812 - 23891008
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||  ||||| || |||||||||||||||||||||||| ||||      
T  23890812 ttgaaaggtggctcgtgctcggaaagtctacgaacctgacagaatacatcggactagactatacataaagaagaatttggtagctatggaagaggaaaat 23890911  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| |||||||||||||    
T  23890912 gctcagctccgtaccgagttagcttctctgagggaagaattggctaaggccaatgataccatgactgctctgctagccgcccaagaacaatcagcca 23891008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 24950698 - 24950894
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||   ||||||| |||||||| ||||||||||||||||||||      
T  24950698 ttgaaaggtggctcgtgctcggaaagtctacgaacctgacagaatacatcggactagactctacagaaagaagaattcggtagctatggaagaagaaaac 24950797  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||    
T  24950798 gctcagctccgtaccgagttagctactctaagggaagaattggctaaggccaatgataccatgacagctctgctagccgctcaggaacaatcagcca 24950894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 29889455 - 29889259
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||  |||||||||||||||||||| ||||| |     
T  29889455 tttgaaaggtggctcgtgctcgaaaagtctacgaacctgacagaatccatcggactagattgtacagaaaaaagaatttggtagctatggaggaagagaa 29889356  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcc 197  Q
       ||||||||| |||||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||| ||||||||  |||||||||||||    
T  29889355 cactcagcttcgcaccgagttggcttctctgagggaagaattggcaaaggccaatgataccatgactgctctgctagccgcctgggaacaatcagcc 29889259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 24689731 - 24689535
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||||| |||||||| || |||||||||   ||||||| |||||||| |||||| |||||||||||||      
T  24689731 ttgaaaggtggctcgtgctcggaaagtttacgaaccagacagaatacaccggactagactctacagaaagaagaattcggtagccatggaagaagaaaat 24689632  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| |||||| ||||||  |||||| |||||| ||||||| || |||||||||||||    
T  24689631 gctcagctccgtaccgagttagccactctaagggaagaattggctaaggctaatgatgtcatgactgctctgctagccgctcaagaacaatcagcca 24689535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 75 - 196
Target Start/End: Original strand, 25197693 - 25197814
Alignment:
Q  75 aatttggtagctatggaagaagaaatggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgt 174  Q
    |||||||||||||||||||| ||||  | |||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||||||     
T  25197693 aatttggtagctatggaagaggaaaatgctcagctccgtaccgagttagcttctttgagggaagaattagctaaggccaatgataccatgactgctctgc 25197792  T
Q  175 tagccgcccaggaacaatcagc 196  Q
    ||||||||||||||||||||||    
T  25197793 tagccgcccaggaacaatcagc 25197814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 23719557 - 23719361
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| || ||| ||||||||||| |      
T  23719557 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaagagaat 23719458  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| || |||||||||||  |||| ||||||||||||| ||| |||||||||  ||||||||||||| ||||||| || |||||||||||||    
T  23719457 gctcagctccgcaccgagttagccactctaagggaagaattggctaaagccaatgatgtcatgaccgctctgctagccgctcaagaacaatcagcca 23719361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 30933224 - 30933420
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   ||||||| |||||||| || ||| |||||||||||||      
T  30933224 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctacagaaagaagaattcggcagccatggaagaagaaaat 30933323  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| |||||| ||||||  |||||||||| || |||| || || |||||||||||||    
T  30933324 gctcagctccgtaccgagttagccactctaagggaagaattggctaaggctaatgatgtcatgaccgctttgctagctgctcaagaacaatcagcca 30933420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 23000686 - 23000492
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || ||||||||||||||||||||| |||| || |||  ||||||||  | |||   ||   ||||||||||||| |     
T  23000686 tttgaaaagtggctcgtgctcagaaggtctacgaacctgacagaatcgatcgaaccagagaatacagaagaaggaaaaagg---ctatggaagaagagaa 23000590  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||||    
T  23000589 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagcca 23000492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 33776077 - 33776269
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || ||||||||||||||||||||| |||| || |||  ||||||||  | |||   ||   ||||||||||||| |     
T  33776077 tttgaaaagtggctcgtgctcagaaggtctacgaacctgacagaatcgatcgaaccagagaatacagaagaaggaaaaagg---ctatggaagaagagaa 33776173  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  33776174 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 33776269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 11547942 - 11548136
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||| | |||||||| || ||||| || ||||| |||   ||||||| |||||||| || ||| ||||||||||| |      
T  11547942 ttgaaaggtggctcgtgctcggaaaatttacgaaccagatagaatacaccggacaagactctacagaaagaagaattcggcagccatggaagaagagaac 11548041  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
    | |||||| |||||||| |||||  |||| |||||||||||||  || || ||||||  |||||| || ||| ||||||| || |||||| ||||    
T  11548042 gctcagctccgtaccgaattagccactctaagggaagaattggccaaagctaatgatgtcatgactgccctgctagccgctcaagaacaaccagc 11548136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 11325062 - 11325254
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   |||||||  | |||   ||   ||||||||||||| |     
T  11325062 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 11325158  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  11325159 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 11325254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 13185542 - 13185350
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   |||||||  | |||   ||   ||||||||||||| |     
T  13185542 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 13185446  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  13185445 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 13185350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 13441388 - 13441196
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   |||||||  | |||   ||   ||||||||||||| |     
T  13441388 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcaatcgaaccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 13441292  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  13441291 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 13441196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 33876515 - 33876707
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    |||||||||||||||||||||  || |||||||||||||| |||||| |||| || |||   |||||||  | |||   ||   ||||||||||||| |     
T  33876515 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaatcgatcgaaccagagagtacagaagaaggaaaaagg---ctatggaagaagagaa 33876611  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  33876612 cgctcagctccgtaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 33876707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 9550113 - 9549923
Alignment:
Q  3 tgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatgg 102  Q
    |||||||||||||||||||  |  |||||||||||||| |||||  |||| || |||  ||||||||  |||||   ||   ||||||||||||| |  |    
T  9550113 tgaaaagtggctcgtgctcagagggtctacgaacctgatagaattgatcgaaccagagaatacagaagaaagaaaaagg---ctatggaagaagagaacg 9550017  T
Q  103 ttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     |||||| || |||||||||||  |||| ||||| ||||||| ||| || ||||||  |||||| |||||| ||||||| || || ||||||||    
T  9550016 ctcagctccgcaccgagttagccactctaagggaggaattggctaaagctaatgatgtcatgactgctctgctagccgctcaagagcaatcagc 9549923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 18996 - 19184
Alignment:
Q  9 gtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaag-aaatggttcag 107  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| |||| | ||||    
T  18996 gtggctcgtgctcggaaagtctacgaacctgacagaatacatcggactagattatacagaaagaagaatttggtagttatggaagaagaaaatagctcag 19095  T
Q  108 cttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
    ||  ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| |||||| ||||||||||||||||||||||    
T  19096 ctctgtaccgagttagcttctttgagggaagaattggctaaagccaatgataccatgactgctctgctagccgcccaggaacaatcagc 19184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 29031 - 29227
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| ||||| |||||||| |||||||| || ||||| |||   ||||||| |||||||| || ||| ||||||||||| |     
T  29031 tttgaaaggtggctcgtgctcggaaagtttacgaaccagacagaatacaccggacaagactctacagaaagaagaattcggcagccatggaagaagagaa 29130  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcc 197  Q
     | |||||| ||||||||||||||  |||| ||||||||||||| ||| || || |||  |||||| |||||| ||||||| || ||||||||||||    
T  29131 cgctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaacgatgtcatgactgctctgctagccgctcaagaacaatcagcc 29227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 121; Significance: 3e-62; HSPs: 3)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 28342 - 28538
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||   ||||||| |||||||| ||||||||||||||||||||      
T  28342 ttgaaaggtggctcgtgctcggaaagtctacgaacctgacagaatacatcggactagactctacagaaagaagaattcggtagctatggaagaagaaaat 28441  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||  ||||| ||||||| ||||||||||||||||    
T  28442 gctcagctccgtaccgagttagctactctaagggaagaattggctaaggccaatgataccatgactactctgctagccgctcaggaacaatcagcca 28538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 41746 - 41550
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||||| |||||||| || |||||||||   ||||||| |||||||| |||||| |||||||||||||      
T  41746 ttgaaaggtggctcgtgctcggaaagtttacgaaccagacagaatacaccggactagactctacagaaagaagaattcggtagccatggaagaagaaaat 41647  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| |||||| ||||||  |||||| |||||| ||||||| || |||||||||||||    
T  41646 gctcagctccgtaccgagttagccactctaagggaagaattggctaaggctaatgatgtcatgactgctctgctagccgctcaagaacaatcagcca 41550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 48662 - 48466
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||||| |||||| | |||||||| || |||||||||   || |||| |||||||| || ||| ||||||||||| |      
T  48662 ttgaaaggtggctcgtgctcggaaagtttacgaatcagacagaatacaccggactagactctatagaaagaagaattcggcagccatggaagaagagaat 48563  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||  ||||||||||||| ||||||| || |||||||||||||    
T  48562 gctcagctccgtaccgagttagccactctaagggaagaattggctaaagctaatgatgtcatgaccgctctgctagccgctcaagaacaatcagcca 48466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 49870 - 49681
Alignment:
Q  13 ctcgtgctcgcaaagtctacgaacctgacagaatccatcggactaga-tcatacagaatgaagaatttggtagctatggaagaagaaatggttcagcttc 111  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||| || ||||||| |||||||| ||||||||||||||||||||  | |||||| |    
T  49870 ctcgtgctcggaaagtctacgaacctgacagaatacatcggactagactcttacagaaagaagaattcggtagctatggaagaagaaaacgctcagctcc 49771  T
Q  112 gtaccgagttagctt--ctct-gagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    ||||||||||||  |  ||||  ||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||    
T  49770 gtaccgagttagactaactctaaagggaagaattggctaaggccaatgataccatgacagctctgctagccgctcaggaacaatcagcca 49681  T

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Target: scaffold0131 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 40239 - 40416
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||  ||||||| ||||||||||||||||||||| ||||| |     
T  40239 tttgaaaggtggctcgtgctcgaaaagtctacgaacctgacagaattcatcggactagattgtacagaaagaagaatttggtagctatggaggaagagaa 40338  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagc 178  Q
       ||||||||| |||||||| ||| || |||||||||| |||| ||||||| ||||||||||||| ||| |||||||    
T  40339 cactcagcttcgcaccgagttggctactttgagggaagagttggctaaggcccatgataccatgactgctttgttagc 40416  T

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Target: scaffold0109 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 53 - 191
Target Start/End: Original strand, 20215 - 20353
Alignment:
Q  53 gactagatcatacagaatgaagaatttggtagctatggaagaagaaatggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggcc 152  Q
    |||||||||||||||||  | ||||  |||||| |||||||||||||  | |||||| |||||| ||| ||||||||||||||||||||||| |||||||    
T  20215 gactagatcatacagaagaaggaataaggtagccatggaagaagaaaatgctcagctccgtaccaagtgagcttctctgagggaagaattggctaaggcc 20314  T
Q  153 aatgataccatgaccgctctgttagccgcccaggaacaa 191  Q
    ||||| |||||||| |||||| |||||||||| ||||||    
T  20315 aatgacaccatgactgctctgctagccgcccaagaacaa 20353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 25871 - 26067
Alignment:
Q  2 ttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaatg 101  Q
    |||||| |||||||||||||| ||| | |||||||| |||||||| || || || |||   ||||||| |||||||| || ||| ||||||||||| |      
T  25871 ttgaaaggtggctcgtgctcggaaaatttacgaaccagacagaatacaccgaacaagactctacagaaagaagaattcggcagccatggaagaagagaac 25970  T
Q  102 gttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagcca 198  Q
    | |||||| ||||||||||||||  |||| |||||||||||||  || || ||||||  ||||||||||||| ||||||| || |||||||||||||    
T  25971 gctcagctccgtaccgagttagccactctaagggaagaattggccaaagctaatgatgtcatgaccgctctgctagccgctcaagaacaatcagcca 26067  T

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Target: scaffold0029 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 1808 - 1613
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaatccatcggactagatcatacagaatgaagaatttggtagctatggaagaagaaat 100  Q
    ||||||| |||||||||||||| ||| | |||||||| |||||||| || ||||| |||   || |||| |||||||| |||||| ||||||||||| |     
T  1808 tttgaaaggtggctcgtgctcggaaaatttacgaaccagacagaatacaccggacaagactctatagaaagaagaattcggtagccatggaagaagagaa 1709  T
Q  101 ggttcagcttcgtaccgagttagcttctctgagggaagaattggttaaggccaatgataccatgaccgctctgttagccgcccaggaacaatcagc 196  Q
     | |||||| ||||||||||||||  |||| |||||||||||||  || || ||||||  |||||| |||||| ||||||| || |||||||||||    
T  1708 cgctcagctccgtaccgagttagccactctaagggaagaattggccaaagctaatgatgtcatgactgctctgctagccgctcaagaacaatcagc 1613  T

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Target: scaffold0159 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37295 - 37251
Alignment:
Q  1 tttgaaaagtggctcgtgctcgcaaagtctacgaacctgacagaa 45  Q
    |||||||||||||||||||||  || |||||||||||||| ||||    
T  37295 tttgaaaagtggctcgtgctcagaaggtctacgaacctgatagaa 37251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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