View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8890_low_11 (Length: 651)

Name: NF8890_low_11
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8890_low_11
NF8890_low_11
[»] chr1 (26 HSPs)
chr1 (1-637)||(2020506-2021165)
chr1 (383-637)||(2007774-2008028)
chr1 (1-155)||(2011253-2011407)
chr1 (1-144)||(2012750-2012893)
chr1 (1-125)||(2007267-2007391)
chr1 (1-146)||(1793497-1793642)
chr1 (174-389)||(2007499-2007720)
chr1 (33-123)||(3373534-3373624)
chr1 (161-236)||(2011471-2011548)
chr1 (430-596)||(3217176-3217342)
chr1 (451-596)||(3363965-3364110)
chr1 (524-596)||(3380264-3380336)
chr1 (1-131)||(3379525-3379655)
chr1 (1-136)||(4334124-4334259)
chr1 (482-596)||(3366390-3366504)
chr1 (186-262)||(1793701-1793777)
chr1 (521-593)||(2947210-2947282)
chr1 (453-596)||(3374067-3374210)
chr1 (209-270)||(2013019-2013080)
chr1 (521-590)||(3353406-3353475)
chr1 (79-131)||(4332673-4332725)
chr1 (522-596)||(3342702-3342776)
chr1 (33-131)||(6600951-6601049)
chr1 (541-590)||(1794138-1794187)
chr1 (500-609)||(4333563-4333672)
chr1 (500-596)||(6599659-6599755)
[»] chr2 (6 HSPs)
chr2 (33-141)||(20935260-20935368)
chr2 (445-609)||(20936082-20936246)
chr2 (445-596)||(20954323-20954474)
chr2 (51-141)||(20953816-20953906)
chr2 (451-596)||(20924478-20924623)
chr2 (452-609)||(39275231-39275388)
[»] chr4 (2 HSPs)
chr4 (1-131)||(21238277-21238407)
chr4 (541-596)||(21238958-21239013)


Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 637
Target Start/End: Original strand, 2020506 - 2021165
Alignment:
Q  1 cttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaactgctctatgtgtgttcagaagcgcacctaatcttaa 100  Q
    |||||||||||||||||||||||| ||| |||||||||||| |||| || |||||||||||||||||||||||||||||||||||| | |||||||||||    
T  2020506 cttgtattaatctaacatatctttggtttagtataaacttctatgactttaaggaaatttcaactgctctatgtgtgttcagaagctcgcctaatcttaa 2020605  T
Q  101 aaaactagaaatatttgtgagtactcatttacttt---------------------aacttgacttttatttgctgggaaggaaatcgcaaacctttttc 179  Q
    ||||||||||||| |||||||||||||||||||||                     ||||||||||||||||||||||||||||||||||||||||||||    
T  2020606 aaaactagaaataattgtgagtactcatttactttgacttgacttttctttactttaacttgacttttatttgctgggaaggaaatcgcaaacctttttc 2020705  T
Q  180 tgcgttaagtatttgtttagtacatttaaagttcccagtctagtattggaagttagtttctaaaacttgtacacttgggttacgattgcctacagaagtt 279  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  2020706 tgcgttaagtatttgtttagtacatttaaagttcccagtttagtattggaagttagtttctaaaacttgtacacttgagttacgattgcctgcagaagtt 2020805  T
Q  280 atgcgttgggttcaatataggtatagttacgattaattggattagagtcctata--aatcagactcatgtatcttcctattcatgttgtatcgatcaata 377  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||    
T  2020806 atgcgttgggttcaatataggtatagttacgatttattgcattagagtcctatataaatcagactcatgtatcttcctattcatgttgtatcaatcaata 2020905  T
Q  378 caatatgatttatggatttggcacaatttcatgtaggcagtacaggaggagaatactgtcgttttagcacctgcctccttttgttgggaaaatgtctttt 477  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  2020906 caatatgatttatggatttggcacaatttcatgtaggcagcacaggaggagaatacggtcgttttagcacctgcctcctattgttgggaaaatgtctttt 2021005  T
Q  478 tggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattc 577  Q
    |||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2021006 tggagccatccatacccatccaagtgtgacatgtgtgtattgaaggcatctctggtatgaaagctgaattagattttttgagatttctacttctctattc 2021105  T
Q  578 gcctatgctagaaaagatggaagtgaagcctgatttgaacgtcggatctaagttgatgtc 637  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2021106 gcctatgctagaaaagatggaagtgaagcctgatttgaacgtcggatctaagttgatgtc 2021165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 383 - 637
Target Start/End: Original strand, 2007774 - 2008028
Alignment:
Q  383 tgatttatggatttggcacaatttcatgtaggcagtacaggaggagaatactgtcgttttagcacctgcctccttttgttgggaaaatgtctttttggag 482  Q
    |||||||| ||||||  |||||| ||||||||||  ||| ||| |||| ||| ||||||||||||| |||| |||||| |||||| || ||||| |||||    
T  2007774 tgatttatagatttgtaacaattgcatgtaggcaaaacatgagaagaaaactatcgttttagcacccgccttcttttgctgggaagatatctttctggag 2007873  T
Q  483 ccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgccta 582  Q
    |||||||| | || || ||||||||||||   |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||     
T  2007874 ccatccatgctcacccgagtgcgacatgtagggattgaaggcatctctggcatcaaatctgaattagattttatgagatttctacttctccattcgcctg 2007973  T
Q  583 tgctagaaaagatggaagtgaagcctgatttgaacgtcggatctaagttgatgtc 637  Q
    ||||||||||||||  |||||||||  |||| ||||| ||||| |||||||||||    
T  2007974 tgctagaaaagatgagagtgaagcccaattttaacgttggatcgaagttgatgtc 2008028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 2011253 - 2011407
Alignment:
Q  1 cttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaactgctctatgtgtgttcagaagcgcacctaatcttaa 100  Q
    |||||||||||||||  | ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||    
T  2011253 cttgtattaatctaatgtctctatggttaagtataaacttcaatgagttgaaggaaatttcaactgctctaagtgtgttcagaagctcgcctaatcttaa 2011352  T
Q  101 aaaactagaaatatttgtgagtactcatttactttaacttgacttttatttgctg 155  Q
    | ||||| ||||||||||||||||||||||||||| | ||||||||| |||||||    
T  2011353 agaactaaaaatatttgtgagtactcatttactttgaattgacttttctttgctg 2011407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 2012750 - 2012893
Alignment:
Q  1 cttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaactgctctatgtgtgttcagaagcgcacctaatcttaa 100  Q
    |||||||||||||||| ||||||| |||||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||| | |||||||||||    
T  2012750 cttgtattaatctaacgtatctttggttaagtataaacttctacgacttgaaagaaatttcaactgctctatgtgtgttcagaagctcgcctaatcttaa 2012849  T
Q  101 aaaactagaaatatttgtgagtactcatttactttaacttgact 144  Q
    | || || | ||||||||||||||||||||| |||  |||||||    
T  2012850 agaattaaatatatttgtgagtactcatttagtttggcttgact 2012893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 2007267 - 2007391
Alignment:
Q  1 cttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaactgctctatgtgtgttcagaagcgcacctaatcttaa 100  Q
    |||||||||||||||||||||||| ||| |||||||||||| |||| || |||||||||||||||||||||||||||||||| ||| | |||||||||||    
T  2007267 cttgtattaatctaacatatctttggtttagtataaacttctatgactttaaggaaatttcaactgctctatgtgtgttcaggagctcgcctaatcttaa 2007366  T
Q  101 aaaactagaaatatttgtgagtact 125  Q
    | || || | |||||||||||||||    
T  2007367 agaattaaatatatttgtgagtact 2007391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 1793497 - 1793642
Alignment:
Q  1 cttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaactgctctatgtgtgttcagaagcgcacctaatcttaa 100  Q
    ||||||| ||| |||||||||||| |||||| |||||||||||||| ||||||||||||||| |||||||||| ||||| |||||| | |||||||||||    
T  1793497 cttgtatcaatataacatatctttggttaagcataaacttcaatgacttgaaggaaatttcagctgctctatgcgtgtttagaagctcgcctaatcttaa 1793596  T
Q  101 aaaactagaaatatttgtgagtactcatttactttaacttgacttt 146  Q
    | ||||| | ||||| |||||| |||||||| |||  |||||||||    
T  1793597 agaactacatatattagtgagtgctcatttagtttggcttgacttt 1793642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 174 - 389
Target Start/End: Original strand, 2007499 - 2007720
Alignment:
Q  174 tttttctgcgttaagtatttgtttagtacatttaaagttcccagtctagtattggaagttagtttctaaaacttgtacacttgggttacgattgcctaca 273  Q
    ||||| ||| |||||||||| |||||| | ||| ||||||||| || |||||||||| ||| ||||||||||||||||||||| ||||||||||||| ||    
T  2007499 tttttttgctttaagtatttttttagtgcctttcaagttcccaatccagtattggaaattattttctaaaacttgtacacttgagttacgattgcctgca 2007598  T
Q  274 gaagttatgcgttgggttcaatataggta----tagttac-gattaattggattagagtcctataaatc--agactcatgtatcttcctattcatgttgt 366  Q
    ||||||    ||  |||||||| ||||||    ||||||| |||| | || | ||||  ||||||||||  |||||||||||||||| | ||||| || |    
T  2007599 gaagttccaagtcaggttcaatttaggtagagttagttacagatttagtgcagtagaaccctataaatcagagactcatgtatcttctttttcatctt-t 2007697  T
Q  367 atcgatcaatacaatatgattta 389  Q
    ||| |||||||||||||||||||    
T  2007698 atcaatcaatacaatatgattta 2007720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 3373534 - 3373624
Alignment:
Q  33 ataaacttcaatgagttgaaggaaatttcaactgctctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagta 123  Q
    |||||||||||||| ||||||||||||||| ||||||| ||  || |||||||| ||||||||||||||||| ||||||||||||||||||    
T  3373534 ataaacttcaatgacttgaaggaaatttcagctgctctttgcttgctcagaagctcacctaatcttaaaaaattagaaatatttgtgagta 3373624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 2011471 - 2011548
Alignment:
Q  161 gaaatcgcaaacctttttctgcgttaagtatttgtttagtacatttaaagttcccagtc--tagtattggaagttagt 236  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||||| || ||  |||||||||||||||||    
T  2011471 gaaatcgcaaacttttttctgcgttaagtatttgtttagtgcctttaaagttcacaatctatagtattggaagttagt 2011548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 430 - 596
Target Start/End: Complemental strand, 3217342 - 3217176
Alignment:
Q  430 atactgtcgttttagcacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctc 529  Q
    |||||| | ||||| |||| ||||||| ||||||| || ||||||||||||||||| || | ||| ||| |||||| ||||||   ||  |||| |||||    
T  3217342 atactgaccttttaacacccgcctcctattgttggaaagatgtctttttggagccacccgtgcccctccgagtgcgccatgtgagcataaaaggaatctc 3217243  T
Q  530 tggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 596  Q
    ||  |  | | |||||||||||||||| |||||||||||| | ||||| || |||||||||||||||    
T  3217242 tgacaatacatctgaattagattttatcagatttctacttatgtattctcccatgctagaaaagatg 3217176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 451 - 596
Target Start/End: Original strand, 3363965 - 3364110
Alignment:
Q  451 cctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattaga 550  Q
    |||||| ||||||||||||| | |||| ||||||| | || |||||  ||||||||||||||  |||  | |||||||||||  | ||| ||||||||||    
T  3363965 cctcctattgttgggaaaatatattttcggagccaacaatgcccattgaagtgcgacatgtgaggatgcatggcatctctggctttaaatctgaattaga 3364064  T
Q  551 ttttatgagatttctacttctctattcgcctatgctagaaaagatg 596  Q
    |||||| |||||||| ||| | ||||| ||| | ||||||||||||    
T  3364065 ttttatcagatttctgcttttatattctcctgtactagaaaagatg 3364110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 524 - 596
Target Start/End: Original strand, 3380264 - 3380336
Alignment:
Q  524 catctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 596  Q
    |||||||||||| ||| | ||||||||||||||  | ||||||||||||||||| ||||||||||||||||||    
T  3380264 catctctggtatcaaatcggaattagattttattcggtttctacttctctattctcctatgctagaaaagatg 3380336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 3379525 - 3379655
Alignment:
Q  1 cttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaactgctctatgtgtgttcagaagcgcacctaatcttaa 100  Q
    |||||||  ||||||  |||||||  ||| |||||||||||||||  ||||||||||||||  |||| || ||  || |||||||| | ||||| |||||    
T  3379525 cttgtatcgatctaagttatctttccttatgtataaacttcaatgtcttgaaggaaatttcggctgccctttgcttgctcagaagctcccctaaccttaa 3379624  T
Q  101 aaaactagaaatatttgtgagtactcattta 131  Q
    |||| | |||||||||||||||||| |||||    
T  3379625 aaaattggaaatatttgtgagtacttattta 3379655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 4334259 - 4334124
Alignment:
Q  1 cttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaactgctctatgtgtgttcagaagcgcacctaatcttaa 100  Q
    |||||||||||||||  | |||||  ||||  ||||||||| || |  || ||||||||||  | ||||| ||||||||||||||| ||||||| ||| |    
T  4334259 cttgtattaatctaagttttctttccttaaccataaacttcgataacatggaggaaatttcggccgctctttgtgtgttcagaagctcacctaaccttca 4334160  T
Q  101 aaaactagaaatatttgtgagtactcatttacttta 136  Q
    |||| || |||||| ||||||||||| |||| ||||    
T  4334159 aaaattaaaaatatctgtgagtactcgtttagttta 4334124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 482 - 596
Target Start/End: Original strand, 3366390 - 3366504
Alignment:
Q  482 gccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcct 581  Q
    |||| |||| ||||| | |||||||||||||   || || |||||||||||||| ||| | ||| ||||||||||  | |||||||||| |||||| |||    
T  3366390 gccagccatgcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaactagattttattcggtttctacttcgctattctcct 3366489  T
Q  582 atgctagaaaagatg 596  Q
    |||||||| ||||||    
T  3366490 atgctagacaagatg 3366504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 1793701 - 1793777
Alignment:
Q  186 aagtatttgtttagtacatttaaagttcccagtctagtattggaagttagtttctaaaacttgtacacttgggttac 262  Q
    |||||||||| |||| | ||| |||||  || |||||||||||||||| | |||||||||||||||||||| |||||    
T  1793701 aagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttac 1793777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 521 - 593
Target Start/End: Complemental strand, 2947282 - 2947210
Alignment:
Q  521 aggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaag 593  Q
    |||||| |||||||| ||| |||||||||||||||| |||||||| |||||  |||| || ||||||||||||    
T  2947282 aggcatttctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaaaag 2947210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 453 - 596
Target Start/End: Original strand, 3374067 - 3374210
Alignment:
Q  453 tccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagatt 552  Q
    |||| |||||||||| || ||||||  | |||| |||| ||||| ||||| | |||||||   || || |||||||||||||| | | | ||||||||||    
T  3374067 tcctattgttgggaagatatcttttcagggccagccatgcccattcaagtacaacatgtgacaatagatggcatctctggtatcagatcagaattagatt 3374166  T
Q  553 ttatgagatttctacttctctattcgcctatgctagaaaagatg 596  Q
    ||||  | ||||||||||  ||||| ||| ||||||||||||||    
T  3374167 ttattcggtttctacttcgatattctcctgtgctagaaaagatg 3374210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 2013019 - 2013080
Alignment:
Q  209 agttcccagtctagtattggaagttagtttctaaaacttgtacacttgggttacgattgcct 270  Q
    |||||| | ||||||||||||||||||||||||||| |||| |||||| | ||| |||||||    
T  2013019 agttcctaatctagtattggaagttagtttctaaaatttgtgcacttgagctacaattgcct 2013080  T

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Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 521 - 590
Target Start/End: Original strand, 3353406 - 3353475
Alignment:
Q  521 aggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaa 590  Q
    |||||| |||||||| ||| |||||||||||||||| |||||||| |||||  |||| || |||||||||    
T  3353406 aggcatttctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaa 3353475  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 4332725 - 4332673
Alignment:
Q  79 tcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcattta 131  Q
    |||||||| |||||||||||  |||| ||||||||| ||||||||||||||||    
T  4332725 tcagaagctcacctaatcttcgaaaagtagaaatatctgtgagtactcattta 4332673  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 596
Target Start/End: Original strand, 3342702 - 3342776
Alignment:
Q  522 ggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 596  Q
    |||||||||||||  ||| ||||||||||||||||   |||||||||||| ||||| |||   ||||||||||||    
T  3342702 ggcatctctggtaccaaatctgaattagattttatccaatttctacttctatattctcctgatctagaaaagatg 3342776  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 6601049 - 6600951
Alignment:
Q  33 ataaacttcaatgagttgaaggaaatttcaactgctctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcattta 131  Q
    ||||||||| |||| |  |||||||||||| ||||||| ||  | ||||||||| ||||||||||   | |||| |||||||| ||||||||| |||||    
T  6601049 ataaacttctatgattcaaaggaaatttcagctgctctttgccttttcagaagctcacctaatctacgagaactcgaaatattggtgagtacttattta 6600951  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 590
Target Start/End: Original strand, 1794138 - 1794187
Alignment:
Q  541 ctgaattagattttatgagatttctacttctctattcgcctatgctagaa 590  Q
    |||||||||||||||| |||||||||||||| ||||| ||| | ||||||    
T  1794138 ctgaattagattttatcagatttctacttctatattctcctgtcctagaa 1794187  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 609
Target Start/End: Complemental strand, 4333672 - 4333563
Alignment:
Q  500 agtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatggaa 599  Q
    |||||||||||||  ||| || |||||||||||||   |  |||||||| |||| || |||||||||||||| ||||| |   ||||||||||||||       
T  4333672 agtgcgacatgtgacgatagatggcatctctggtacccagtctgaattaaatttgatcagatttctacttctatattctctggtgctagaaaagatgatt 4333573  T
Q  600 gtgaagcctg 609  Q
    ||||||||||    
T  4333572 gtgaagcctg 4333563  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 596
Target Start/End: Complemental strand, 6599755 - 6599659
Alignment:
Q  500 agtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 596  Q
    |||||||||||||   || || |||||||||||||| ||| |||| ||||| || || || ||| ||||||| ||||| ||| ||||||||| ||||    
T  6599755 agtgcgacatgtgagaatagatggcatctctggtatcaaacctgagttagacttcatcagctttatacttctatattctcctgtgctagaaaggatg 6599659  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 20935260 - 20935368
Alignment:
Q  33 ataaacttcaatgagttgaaggaaatttcaactgctctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcatttac 132  Q
    ||||||||| |||| ||||||||||||||  ||||||| ||  || |||||||| |||||||||||  |||| ||||||||||||||||||||||||||     
T  20935260 ataaacttcgatgacttgaaggaaatttcggctgctctttgcttgctcagaagctcacctaatcttcgaaaattagaaatatttgtgagtactcatttag 20935359  T
Q  133 tttaacttg 141  Q
    |||| ||||    
T  20935360 tttagcttg 20935368  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 445 - 609
Target Start/End: Original strand, 20936082 - 20936246
Alignment:
Q  445 cacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctga 544  Q
    |||||||  ||| ||||||||||||  |||||| || |||| |||| ||||| | |||||||||||||  ||| || ||||||| |||||  |||   ||    
T  20936082 cacctgctgcctattgttgggaaaaaatcttttcggcgccagccatgcccattcgagtgcgacatgtgacgatagatggcatctttggtaacaaattgga 20936181  T
Q  545 attagattttatgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagcctg 609  Q
    |||||||||||| | |||||||||||| ||||| ||| ||||||||||||||   ||||||||||    
T  20936182 attagattttatcaaatttctacttctatattctcctgtgctagaaaagatgactgtgaagcctg 20936246  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 445 - 596
Target Start/End: Original strand, 20954323 - 20954474
Alignment:
Q  445 cacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctga 544  Q
    |||||||| ||| |||||||||| || | |||| ||  ||| |||| ||||| |||||||||||||||  |||||| ||||||| |||||  ||    ||    
T  20954323 cacctgccgcctattgttgggaagatatattttcggcaccagccatgcccattcaagtgcgacatgtggcgattgatggcatctttggtaccaatttgga 20954422  T
Q  545 attagattttatgagatttctacttctctattcgcctatgctagaaaagatg 596  Q
    |||||||||||| | |||||||||||| ||||| || |||||||||||||||    
T  20954423 attagattttatcaaatttctacttctatattctcccatgctagaaaagatg 20954474  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 20953816 - 20953906
Alignment:
Q  51 aaggaaatttcaactgctctatgtgtgttcagaagcgcacctaatcttaaaaaactagaaatatttgtgagtactcatttactttaacttg 141  Q
    |||||||||||  ||||||| ||  || |||||||| |||||||||||  |||| |||||||||||||||||||||||||| |||| ||||    
T  20953816 aaggaaatttcggctgctctttgcttgctcagaagctcacctaatcttcgaaaattagaaatatttgtgagtactcatttagtttagcttg 20953906  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 451 - 596
Target Start/End: Original strand, 20924478 - 20924623
Alignment:
Q  451 cctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattaga 550  Q
    |||||| |||||||||| || |||||| |||||||   || | | || || ||| |||||||  |||  ||| |||||||||||  ||| ||||||||||    
T  20924478 cctcctattgttgggaagatatcttttcggagccagatatgctcctcaaattgcaacatgtggagatacaagacatctctggtaccaaatctgaattaga 20924577  T
Q  551 ttttatgagatttctacttctctattcgcctatgctagaaaagatg 596  Q
    |||||| |||||||||||||||||||| ||| ||||  ||||||||    
T  20924578 ttttatcagatttctacttctctattcacctgtgctcaaaaagatg 20924623  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 452 - 609
Target Start/End: Original strand, 39275231 - 39275388
Alignment:
Q  452 ctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagat 551  Q
    ||||| |||||||||| ||  |||||  | |||| |||| ||||||||||| |||||||||   || |  |||||| |||| || ||| |||||||||||    
T  39275231 ctcctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagat 39275330  T
Q  552 tttatgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagcctg 609  Q
    ||||| | |||||| ||  | ||||| |||||||||||||| |||   ||||||||||    
T  39275331 tttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctg 39275388  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 21238277 - 21238407
Alignment:
Q  1 cttgtattaatctaacatatcttttgttaagtataaacttcaatgagttgaaggaaatttcaactgctctatgtgtgttcagaagcgcacctaatcttaa 100  Q
    |||||||| ||||||   ||||||||||||  |||||||||||||| ||||||||||| ||  ||||||| ||  || |||||||| ||||||||||       
T  21238277 cttgtattcatctaagccatcttttgttaaacataaacttcaatgacttgaaggaaatctcggctgctctctgcttgctcagaagctcacctaatctgcg 21238376  T
Q  101 aaaactagaaatatttgtgagtactcattta 131  Q
    |||| || |||||| ||||||||||| ||||    
T  21238377 aaaattaaaaatatctgtgagtactcgttta 21238407  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 596
Target Start/End: Original strand, 21238958 - 21239013
Alignment:
Q  541 ctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 596  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| |||||||||||    
T  21238958 ctgagttagattttatcagatttctacttctcaattctcctatgttagaaaagatg 21239013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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