View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_13 (Length: 619)
Name: NF8890_low_13
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 2 - 609
Target Start/End: Complemental strand, 50212571 - 50211964
Alignment:
| Q |
2 |
caaataatacatcttcaatctaatgtgttagtgttttgtagcnnnnnnnnagcttctatgtttgttttgttggtgctatggatttgaatttgattaatgc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50212571 |
caaataatacatcttcaatctaatgtgttagtgttttgtagcttttttttagcttctatgtttgttttgttggtgctatggatttgaatttgattaatgc |
50212472 |
T |
|
| Q |
102 |
agtagcaatataatatagcatcacctttatgaacatgaccttgtgcaacattgagaacacaatttctccttgaatgtttggatgacttgaggaagaatct |
201 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50212471 |
agtagcaatataatatagcatcacctttacgaacatgaccttgtgcagcattgagaacacaatttctccttgaatgtttggatgacttgaggaagaatct |
50212372 |
T |
|
| Q |
202 |
aatgaaacggggacttaatttgcttattcaacatggcaaacctgaagatattcttccttctctagttaaagcttatggagctcatacagttagtatttga |
301 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50212371 |
aatgaaacggggacttaatttgcttattcaacatggcaaacctgaagatattcttccttctctagttaaagcttatggagctcatacagttagtatttga |
50212272 |
T |
|
| Q |
302 |
gtatcannnnnnnaattatgtttaataagctagtttagattgatgaaatttccaaattttgtgataattgaagaatctttagggttggttcattaattag |
401 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50212271 |
gtatcatttttttaattatgtttaataagctagtttagattgatgaaatttccaaattttgtgataattgaagaatctttagggttggttcattaattag |
50212172 |
T |
|
| Q |
402 |
tgaatgtgaaattgtcaggtttatgcacagaaagaaacttgtagcgaagagttgaatgttgaaaggtctgtaaacaatcgtcttcaacaagtggtggtac |
501 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50212171 |
tgaatgtgaaattgtcaggtttatgcacagaaagaaacttgtagcgaagagttgaatgttgaaaggtctgtaaacaatcgtcttcaacaagtggtggtac |
50212072 |
T |
|
| Q |
502 |
catctaatggatctgctggggcggcaacaacttctaacagccaccccaaattacagtttgtttggggcaccactatgtaccaccatgatgatcttccttt |
601 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50212071 |
catctaatggatctgctggggcggcaacaacttctaacagccaccccaaattacagtttgtttggggcaccactatgtaccaccatgatgatcttccttt |
50211972 |
T |
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| Q |
602 |
tgatgtcc |
609 |
Q |
| |
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|||||||| |
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| T |
50211971 |
tgatgtcc |
50211964 |
T |
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