View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8890_low_14 (Length: 577)

Name: NF8890_low_14
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8890_low_14
NF8890_low_14
[»] chr2 (33 HSPs)
chr2 (13-308)||(179448-179743)
chr2 (536-575)||(1415826-1415865)
chr2 (536-577)||(5427661-5427702)
chr2 (536-577)||(31788723-31788764)
chr2 (537-577)||(30923250-30923290)
chr2 (537-577)||(31193129-31193169)
chr2 (537-577)||(38445433-38445473)
chr2 (536-571)||(2808247-2808282)
chr2 (536-571)||(4193109-4193144)
chr2 (536-571)||(22422000-22422035)
chr2 (536-571)||(25087307-25087342)
chr2 (536-571)||(27248925-27248960)
chr2 (536-571)||(31580429-31580464)
chr2 (536-575)||(32448409-32448448)
chr2 (536-571)||(32913500-32913535)
chr2 (536-575)||(33923974-33924013)
chr2 (536-571)||(36234270-36234305)
chr2 (536-574)||(4041386-4041424)
chr2 (537-571)||(4228395-4228429)
chr2 (537-571)||(21570183-21570217)
chr2 (536-577)||(4779020-4779061)
chr2 (536-573)||(7646749-7646786)
chr2 (536-577)||(9374337-9374378)
chr2 (536-577)||(12553961-12554002)
chr2 (536-577)||(18763735-18763776)
chr2 (536-577)||(36942914-36942955)
chr2 (536-577)||(37876398-37876439)
chr2 (536-577)||(41328006-41328047)
chr2 (537-577)||(459051-459091)
chr2 (539-575)||(4100599-4100635)
chr2 (536-568)||(26025270-26025302)
chr2 (537-577)||(36692141-36692181)
chr2 (539-571)||(38575263-38575295)
[»] chr1 (28 HSPs)
chr1 (385-438)||(21695315-21695368)
chr1 (536-577)||(41081478-41081519)
chr1 (536-577)||(49504386-49504427)
chr1 (537-577)||(11462274-11462314)
chr1 (537-577)||(14872899-14872939)
chr1 (539-575)||(24583211-24583247)
chr1 (539-575)||(24583407-24583443)
chr1 (537-577)||(36894200-36894240)
chr1 (536-575)||(5984078-5984117)
chr1 (536-571)||(9686979-9687014)
chr1 (536-571)||(20266574-20266609)
chr1 (536-571)||(30879347-30879382)
chr1 (536-571)||(34519400-34519435)
chr1 (536-575)||(34878069-34878108)
chr1 (536-571)||(48217709-48217744)
chr1 (537-575)||(21687640-21687678)
chr1 (537-571)||(35584398-35584432)
chr1 (536-577)||(26535596-26535637)
chr1 (536-577)||(27456749-27456790)
chr1 (536-569)||(27914881-27914914)
chr1 (536-569)||(30712083-30712116)
chr1 (536-577)||(32395257-32395298)
chr1 (536-569)||(33816942-33816975)
chr1 (536-569)||(33876412-33876445)
chr1 (536-577)||(44915899-44915940)
chr1 (537-577)||(10776253-10776293)
chr1 (539-571)||(18569088-18569120)
chr1 (537-577)||(44637683-44637723)
[»] chr6 (18 HSPs)
chr6 (536-577)||(606462-606503)
chr6 (536-577)||(7514994-7515035)
chr6 (536-577)||(32327011-32327052)
chr6 (537-577)||(12170726-12170766)
chr6 (536-571)||(7028123-7028158)
chr6 (536-571)||(8497236-8497271)
chr6 (536-571)||(23947091-23947126)
chr6 (536-574)||(28634887-28634925)
chr6 (536-577)||(3913365-3913406)
chr6 (536-577)||(9341442-9341483)
chr6 (536-573)||(14174862-14174899)
chr6 (536-573)||(14179398-14179435)
chr6 (536-577)||(33052959-33053000)
chr6 (537-573)||(1450528-1450564)
chr6 (539-571)||(7880879-7880911)
chr6 (536-568)||(29319668-29319700)
chr6 (537-577)||(34185486-34185526)
chr6 (539-575)||(34489465-34489501)
[»] chr4 (23 HSPs)
chr4 (536-577)||(13634392-13634433)
chr4 (536-577)||(4142555-4142596)
chr4 (536-577)||(19853303-19853344)
chr4 (536-577)||(21686033-21686074)
chr4 (537-577)||(2521056-2521096)
chr4 (537-577)||(26633463-26633503)
chr4 (537-577)||(56040438-56040478)
chr4 (536-571)||(2115362-2115397)
chr4 (536-575)||(6155000-6155039)
chr4 (536-571)||(9284191-9284226)
chr4 (536-571)||(9528651-9528686)
chr4 (536-571)||(20569537-20569572)
chr4 (536-571)||(25274163-25274198)
chr4 (536-575)||(47320204-47320243)
chr4 (536-574)||(12265738-12265776)
chr4 (537-571)||(53616425-53616459)
chr4 (536-577)||(17949114-17949155)
chr4 (536-577)||(17952966-17953007)
chr4 (536-577)||(32766791-32766832)
chr4 (544-577)||(32952540-32952573)
chr4 (13-70)||(45440000-45440057)
chr4 (540-577)||(46990909-46990946)
chr4 (536-577)||(53811295-53811336)
[»] chr3 (30 HSPs)
chr3 (536-577)||(21533600-21533641)
chr3 (538-577)||(48650527-48650566)
chr3 (536-577)||(6954487-6954528)
chr3 (536-577)||(20464756-20464797)
chr3 (536-577)||(43017144-43017185)
chr3 (536-577)||(52922908-52922949)
chr3 (537-577)||(40487581-40487621)
chr3 (536-575)||(628715-628754)
chr3 (536-571)||(2342713-2342748)
chr3 (536-571)||(4178830-4178865)
chr3 (536-571)||(25162701-25162736)
chr3 (536-571)||(38854813-38854848)
chr3 (536-575)||(47041839-47041878)
chr3 (537-575)||(29503722-29503760)
chr3 (537-571)||(32607734-32607768)
chr3 (537-571)||(44907174-44907208)
chr3 (539-577)||(45568239-45568277)
chr3 (537-571)||(50611193-50611227)
chr3 (536-573)||(9797325-9797362)
chr3 (536-577)||(10108492-10108533)
chr3 (536-577)||(10229732-10229773)
chr3 (536-577)||(10233326-10233367)
chr3 (536-577)||(36910557-36910598)
chr3 (540-577)||(43488386-43488423)
chr3 (539-575)||(3085085-3085121)
chr3 (537-577)||(9998723-9998763)
chr3 (536-568)||(17238073-17238105)
chr3 (537-577)||(23799740-23799780)
chr3 (537-573)||(46178831-46178867)
chr3 (537-577)||(46304313-46304353)
[»] chr8 (10 HSPs)
chr8 (536-575)||(1236487-1236526)
chr8 (536-577)||(10377933-10377974)
chr8 (536-575)||(3240642-3240681)
chr8 (536-571)||(14906697-14906732)
chr8 (536-575)||(30568110-30568149)
chr8 (538-577)||(40211091-40211130)
chr8 (539-577)||(33214463-33214501)
chr8 (536-577)||(7883030-7883071)
chr8 (536-577)||(23230902-23230943)
chr8 (537-574)||(28240113-28240150)
[»] scaffold0014 (1 HSPs)
scaffold0014 (537-575)||(201148-201186)
[»] chr7 (20 HSPs)
chr7 (536-577)||(28044547-28044588)
chr7 (536-577)||(48316610-48316651)
chr7 (537-577)||(12141099-12141139)
chr7 (536-576)||(21266655-21266695)
chr7 (537-577)||(48061681-48061721)
chr7 (536-571)||(1448606-1448641)
chr7 (536-571)||(12502026-12502061)
chr7 (536-571)||(12527660-12527695)
chr7 (536-571)||(14627672-14627707)
chr7 (536-571)||(26492633-26492668)
chr7 (536-571)||(42066836-42066871)
chr7 (537-571)||(32684936-32684970)
chr7 (537-571)||(34773979-34774013)
chr7 (537-571)||(45198808-45198842)
chr7 (536-577)||(17611653-17611694)
chr7 (537-577)||(3267009-3267049)
chr7 (537-573)||(20083604-20083640)
chr7 (536-568)||(23425147-23425179)
chr7 (537-577)||(35261559-35261599)
chr7 (536-572)||(39328585-39328621)
[»] chr5 (18 HSPs)
chr5 (536-577)||(6011929-6011970)
chr5 (536-577)||(9113516-9113557)
chr5 (537-577)||(24229576-24229616)
chr5 (536-575)||(8088004-8088043)
chr5 (536-575)||(13422190-13422229)
chr5 (536-575)||(14726252-14726291)
chr5 (536-571)||(21060057-21060092)
chr5 (536-571)||(34881987-34882022)
chr5 (536-575)||(38007615-38007654)
chr5 (537-571)||(781658-781692)
chr5 (539-577)||(8096293-8096331)
chr5 (537-575)||(35851055-35851093)
chr5 (536-577)||(13007485-13007526)
chr5 (538-571)||(18677242-18677275)
chr5 (536-577)||(26825686-26825727)
chr5 (537-577)||(27576160-27576200)
chr5 (536-568)||(30371894-30371926)
chr5 (537-573)||(36057103-36057139)
[»] scaffold0884 (1 HSPs)
scaffold0884 (537-575)||(1765-1803)
[»] scaffold0445 (1 HSPs)
scaffold0445 (536-577)||(1629-1670)
[»] scaffold0146 (1 HSPs)
scaffold0146 (536-568)||(16094-16126)
[»] scaffold0022 (1 HSPs)
scaffold0022 (537-569)||(83212-83244)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 179448 - 179743
Alignment:
Q  13 atggacatcacagacatggcggtttatttagattctctcctttcaattaatctcatcaataccaccagctcaaagttccatattcatgtagcccttatcc 112  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||  ||||| ||||    
T  179448 atgggcatcacagatatggcggtttattcagattctctcctttcaattaatctcatcactaccaccagttcaaagttccatattcatgcggccctaatcc 179547  T
Q  113 aagacatcagagacaagctttctctaaagaatttttcgctcaaccacaccctccgggaaggaaatcaaagtgctgactatttggctaaactaggtgcaat 212  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  179548 aagatatcagagacaagctttctctaaggaatttttcgctcaaccacaccctccgggaaggaaatcaaagtgctgactatttggctaaactaggtgcaat 179647  T
Q  213 gtcagatatcaacgtcctaatacaccagttgcctccggatgagctacgccctttgttgaagattgatgcagcaggaaccttgtttctgagatctta 308  Q
    ||||||| ||||||| ||||||||||||| |||||||||||| ||  ||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  179648 gtcagatgtcaacgttctaatacaccagtcgcctccggatgaactctgccctttgttgaagaatgatgcagcaggaaccttgttcctgagatctta 179743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 536 - 575
Target Start/End: Complemental strand, 1415865 - 1415826
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  1415865 gacaaaaacaaaatgatattcattcattcaaatcgataga 1415826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 5427661 - 5427702
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  5427661 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 5427702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 31788764 - 31788723
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  31788764 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 31788723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 30923250 - 30923290
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  30923250 acaaaaacaaaatgatattcattcattcaaattgatagagt 30923290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 31193129 - 31193169
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  31193129 acaaaaacaaaacgatattcattcattcaaatcgatagagt 31193169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 38445473 - 38445433
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  38445473 acaaaaacaaaacgatattcattcattcaaatcgatagagt 38445433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Original strand, 2808247 - 2808282
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  2808247 gacaaaaacaaaatgatattcattcattcaaatcga 2808282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 4193144 - 4193109
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  4193144 gacaaaaacaaaatgatattcattcattcaaatcga 4193109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 22422035 - 22422000
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  22422035 gacaaaaacaaaatgatattcattcattcaaatcga 22422000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 25087342 - 25087307
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  25087342 gacaaaaacaaaatgatattcattcattcaaatcga 25087307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Original strand, 27248925 - 27248960
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  27248925 gacaaaaacaaaatgatattcattcattcaaatcga 27248960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Original strand, 31580429 - 31580464
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  31580429 gacaaaaacaaaatgatattcattcattcaaatcga 31580464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 575
Target Start/End: Original strand, 32448409 - 32448448
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  32448409 gacaaaaacaaaatgatattcattcattcaaattgataga 32448448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 32913535 - 32913500
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  32913535 gacaaaaacaaaatgatattcattcattcaaatcga 32913500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 575
Target Start/End: Complemental strand, 33924013 - 33923974
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  33924013 gacaaaaacaaaacgatattcattcattcaaatcgataga 33923974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 36234305 - 36234270
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  36234305 gacaaaaacaaaatgatattcattcattcaaatcga 36234270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 574
Target Start/End: Original strand, 4041386 - 4041424
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatag 574  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  4041386 gacaaaaataaaatgatattcattcattcaaatcgatag 4041424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 571
Target Start/End: Complemental strand, 4228429 - 4228395
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    |||||||||||||||| ||||||||||||||||||    
T  4228429 acaaaaacaaaatgatattcattcattcaaatcga 4228395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 571
Target Start/End: Original strand, 21570183 - 21570217
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    |||||||||||||||| ||||||||||||||||||    
T  21570183 acaaaaacaaaatgatattcattcattcaaatcga 21570217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 4779061 - 4779020
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||||  || ||||||||||||||||||||||||    
T  4779061 gacaaaaacaaaactatattcattcattcaaatcgatagagt 4779020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 573
Target Start/End: Complemental strand, 7646786 - 7646749
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgata 573  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  7646786 gacaaaaacaaaacgatattcattcattcaaatcgata 7646749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 9374337 - 9374378
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| |||||||||||||||||| |||||    
T  9374337 gacaaaaacaaaacgatattcattcattcaaatcgacagagt 9374378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 12553961 - 12554002
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||| |||||||| ||||||||||||||| ||||||||    
T  12553961 gacaaaaataaaatgatattcattcattcaaattgatagagt 12554002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 18763776 - 18763735
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| |||||||||||||||| |||||||    
T  18763776 gacaaaaacaaaacgatattcattcattcaaatcaatagagt 18763735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 36942914 - 36942955
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| |||||||||||||||| |||||||    
T  36942914 gacaaaaacaaaacgatattcattcattcaaatcaatagagt 36942955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 37876398 - 37876439
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  37876398 gacaaaaacaaaacgatattcattcattcaaattgatagagt 37876439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 41328047 - 41328006
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  41328047 gacaaaaacaaaacgatattcattcattcaaattgatagagt 41328006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 459051 - 459091
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||| |||| ||| ||||||||||||||||||||||||    
T  459051 acaaaaataaaacgatattcattcattcaaatcgatagagt 459091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 4100635 - 4100599
Alignment:
Q  539 aaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  4100635 aaaaacaaaacgatattcattcattcaaatcgataga 4100599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 26025270 - 26025302
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaat 568  Q
    ||||||||||||||||| |||||||||||||||    
T  26025270 gacaaaaacaaaatgatattcattcattcaaat 26025302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 36692181 - 36692141
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||| ||| | ||||||||||||||||||||||    
T  36692181 acaaaaacaaaacgatatacattcattcaaatcgatagagt 36692141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 571
Target Start/End: Original strand, 38575263 - 38575295
Alignment:
Q  539 aaaaacaaaatgatgttcattcattcaaatcga 571  Q
    |||||||||||||| ||||||||||||||||||    
T  38575263 aaaaacaaaatgatattcattcattcaaatcga 38575295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 21695315 - 21695368
Alignment:
Q  385 tgtgtcaatatttttcatttcgaattagatgacaagaaaaatgatatagaagag 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21695315 tgtgtcaatatttttcatttcgaattagatgacaagaaaaatgatatagaagag 21695368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 41081478 - 41081519
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  41081478 gacaaaaacaaaatgatattcattcattcaaatcgatagagt 41081519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 49504386 - 49504427
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  49504386 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 49504427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 11462274 - 11462314
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  11462274 acaaaaacaaaacgatattcattcattcaaatcgatagagt 11462314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 14872939 - 14872899
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  14872939 acaaaaacaaaatgatattcattcatttaaatcgatagagt 14872899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 24583247 - 24583211
Alignment:
Q  539 aaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    |||||||||||||| ||||||||||||||||||||||    
T  24583247 aaaaacaaaatgatattcattcattcaaatcgataga 24583211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 24583443 - 24583407
Alignment:
Q  539 aaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    |||||||||||||| ||||||||||||||||||||||    
T  24583443 aaaaacaaaatgatattcattcattcaaatcgataga 24583407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 36894200 - 36894240
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  36894200 acaaaaacaaaacgatattcattcattcaaatcgatagagt 36894240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 575
Target Start/End: Complemental strand, 5984117 - 5984078
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  5984117 gacaaaaacaaaacgatattcattcattcaaatcgataga 5984078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Original strand, 9686979 - 9687014
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9686979 gacaaaaacaaaatgatattcattcattcaaatcga 9687014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 20266609 - 20266574
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  20266609 gacaaaaacaaaatgatattcattcattcaaatcga 20266574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 30879382 - 30879347
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  30879382 gacaaaaacaaaatgatattcattcattcaaatcga 30879347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 34519435 - 34519400
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  34519435 gacaaaaacaaaatgatattcattcattcaaatcga 34519400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 575
Target Start/End: Original strand, 34878069 - 34878108
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  34878069 gacaaaaacaaaacgatattcattcattcaaatcgataga 34878108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 48217744 - 48217709
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  48217744 gacaaaaacaaaatgatattcattcattcaaatcga 48217709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 575
Target Start/End: Complemental strand, 21687678 - 21687640
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  21687678 acaaaaacaaaacgatattcattcattcaaatcgataga 21687640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 571
Target Start/End: Original strand, 35584398 - 35584432
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    |||||||||||||||| ||||||||||||||||||    
T  35584398 acaaaaacaaaatgatattcattcattcaaatcga 35584432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 26535637 - 26535596
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  26535637 gacaaaaacaaaacgatattcattcattcaaattgatagagt 26535596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 27456790 - 27456749
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  27456790 gacaaaaacaaaacgatattcattcattcaaattgatagagt 27456749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 569
Target Start/End: Original strand, 27914881 - 27914914
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatc 569  Q
    ||||||||||||||||| ||||||||||||||||    
T  27914881 gacaaaaacaaaatgatattcattcattcaaatc 27914914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 569
Target Start/End: Original strand, 30712083 - 30712116
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatc 569  Q
    ||||||||||||||||| ||||||||||||||||    
T  30712083 gacaaaaacaaaatgatattcattcattcaaatc 30712116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 32395298 - 32395257
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||    
T  32395298 gacaaaaacaaaacgatattcatccattcaaatcgatagagt 32395257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 569
Target Start/End: Original strand, 33816942 - 33816975
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatc 569  Q
    ||||||||||||||||| ||||||||||||||||    
T  33816942 gacaaaaacaaaatgatcttcattcattcaaatc 33816975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 569
Target Start/End: Original strand, 33876412 - 33876445
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatc 569  Q
    ||||||||||||||||| ||||||||||||||||    
T  33876412 gacaaaaacaaaatgatcttcattcattcaaatc 33876445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 44915940 - 44915899
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||| |||||||| ||||||||||||||| ||||||||    
T  44915940 gacaaaaataaaatgatattcattcattcaaattgatagagt 44915899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 10776253 - 10776293
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||||||| ||| ||||||||||| ||||||||    
T  10776253 acaaaaacaaaatgatattcgttcattcaaattgatagagt 10776293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 571
Target Start/End: Original strand, 18569088 - 18569120
Alignment:
Q  539 aaaaacaaaatgatgttcattcattcaaatcga 571  Q
    |||||||||||||| ||||||||||||||||||    
T  18569088 aaaaacaaaatgatattcattcattcaaatcga 18569120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 44637723 - 44637683
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||| |||||||| ||||||||||| ||||||||||||    
T  44637723 acaaaaataaaatgatattcattcattccaatcgatagagt 44637683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 606503 - 606462
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  606503 gacaaaaacaaaatgatattcattcattcaaatcgatagagt 606462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 7514994 - 7515035
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  7514994 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 7515035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 32327011 - 32327052
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  32327011 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 32327052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 12170766 - 12170726
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  12170766 acaaaaacaaaacgatattcattcattcaaatcgatagagt 12170726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 7028158 - 7028123
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  7028158 gacaaaaacaaaatgatattcattcattcaaatcga 7028123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 8497271 - 8497236
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  8497271 gacaaaaacaaaatgatattcattcattcaaatcga 8497236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Original strand, 23947091 - 23947126
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  23947091 gacaaaaacaaaatgatattcattcattcaaatcga 23947126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 574
Target Start/End: Original strand, 28634887 - 28634925
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatag 574  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  28634887 gacaaaaacaaactgatattcattcattcaaatcgatag 28634925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 3913365 - 3913406
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||| |||| ||| ||||||||||||||||||||||||    
T  3913365 gacaaaaataaaacgatattcattcattcaaatcgatagagt 3913406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 9341442 - 9341483
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| |||  |||||||||||||||||||||||    
T  9341442 gacaaaaacaaaacgatactcattcattcaaatcgatagagt 9341483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 573
Target Start/End: Original strand, 14174862 - 14174899
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgata 573  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  14174862 gacaaaaacaaaacgatattcattcattcaaatcgata 14174899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 573
Target Start/End: Original strand, 14179398 - 14179435
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgata 573  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  14179398 gacaaaaacaaaacgatattcattcattcaaatcgata 14179435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 33052959 - 33053000
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  33052959 gacaaaaacaaaacgatattcattcattcaaattgatagagt 33053000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 573
Target Start/End: Original strand, 1450528 - 1450564
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgata 573  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  1450528 acaaaaataaaatgatattcattcattcaaatcgata 1450564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 571
Target Start/End: Original strand, 7880879 - 7880911
Alignment:
Q  539 aaaaacaaaatgatgttcattcattcaaatcga 571  Q
    |||||||||||||| ||||||||||||||||||    
T  7880879 aaaaacaaaatgatattcattcattcaaatcga 7880911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 29319668 - 29319700
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaat 568  Q
    ||||||||||||||||| |||||||||||||||    
T  29319668 gacaaaaacaaaatgatattcattcattcaaat 29319700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 34185486 - 34185526
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||| |||||||| ||||||||||||||| ||||||||    
T  34185486 acaaaaataaaatgatattcattcattcaaattgatagagt 34185526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 34489501 - 34489465
Alignment:
Q  539 aaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    |||||||||||||| || |||||||||||||||||||    
T  34489501 aaaaacaaaatgatatttattcattcaaatcgataga 34489465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 13634433 - 13634392
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  13634433 gacaaaaacaaaatgatattcattcattcaaatcgatagagt 13634392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 4142555 - 4142596
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  4142555 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 4142596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 19853303 - 19853344
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  19853303 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 19853344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 21686033 - 21686074
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  21686033 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 21686074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 2521096 - 2521056
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  2521096 acaaaaacaaaacgatattcattcattcaaatcgatagagt 2521056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 26633463 - 26633503
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  26633463 acaaaaacaaaacgatattcattcattcaaatcgatagagt 26633503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 56040438 - 56040478
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  56040438 acaaaaacaaaacgatattcattcattcaaatcgatagagt 56040478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Original strand, 2115362 - 2115397
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  2115362 gacaaaaacaaaatgatattcattcattcaaatcga 2115397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 575
Target Start/End: Original strand, 6155000 - 6155039
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  6155000 gacaaaaacaaaatgatattcattcattcaaattgataga 6155039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 9284226 - 9284191
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9284226 gacaaaaacaaaatgatattcattcattcaaatcga 9284191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Original strand, 9528651 - 9528686
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9528651 gacaaaaacaaaatgatattcattcattcaaatcga 9528686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 20569572 - 20569537
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  20569572 gacaaaaacaaaatgatattcattcattcaaatcga 20569537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 25274198 - 25274163
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  25274198 gacaaaaacaaaatgatattcattcattcaaatcga 25274163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 575
Target Start/End: Original strand, 47320204 - 47320243
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  47320204 gacaaaaacaaaattatattcattcattcaaatcgataga 47320243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 574
Target Start/End: Complemental strand, 12265776 - 12265738
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatag 574  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  12265776 gacaaaaacaaactgatattcattcattcaaatcgatag 12265738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 571
Target Start/End: Original strand, 53616425 - 53616459
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    |||||||||||||||| ||||||||||||||||||    
T  53616425 acaaaaacaaaatgatattcattcattcaaatcga 53616459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 17949114 - 17949155
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||| |||||||| ||| ||||||||||||||||||||||||    
T  17949114 gacagaaacaaaacgatattcattcattcaaatcgatagagt 17949155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 17952966 - 17953007
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||| |||||||| ||| ||||||||||||||||||||||||    
T  17952966 gacagaaacaaaacgatattcattcattcaaatcgatagagt 17953007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 32766832 - 32766791
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||||  || ||||||||||||||||||||||||    
T  32766832 gacaaaaacaaaacaatattcattcattcaaatcgatagagt 32766791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 577
Target Start/End: Original strand, 32952540 - 32952573
Alignment:
Q  544 caaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||| ||||||||||||||||||||||||    
T  32952540 caaaatgatattcattcattcaaatcgatagagt 32952573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 45440057 - 45440000
Alignment:
Q  13 atggacatcacagacatggcggtttatttagattctctcctttcaattaatctcatca 70  Q
    |||| |||| |||| ||||  |||||||||||||| |||||||||||||| |||||||    
T  45440057 atgggcatctcagatatggttgtttatttagattccctcctttcaattaacctcatca 45440000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 577
Target Start/End: Original strand, 46990909 - 46990946
Alignment:
Q  540 aaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  46990909 aaaaaaaaatgatattcattcattcaaatcgatagagt 46990946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 53811336 - 53811295
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| |||||||||| |||||||||||||    
T  53811336 gacaaaaacaaaacgatattcattcatttaaatcgatagagt 53811295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 21533600 - 21533641
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  21533600 gacaaaaacaaaatgatattcattcattcaaatcgatagagt 21533641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 538 - 577
Target Start/End: Original strand, 48650527 - 48650566
Alignment:
Q  538 caaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  48650527 caaaaacaaaatgatattcattcattcaaatcgatagagt 48650566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 6954487 - 6954528
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  6954487 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 6954528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 20464756 - 20464797
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  20464756 gacaaaaacaaaatgatattcattcattcaaattgatagagt 20464797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 43017185 - 43017144
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  43017185 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 43017144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 52922908 - 52922949
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  52922908 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 52922949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 40487621 - 40487581
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  40487621 acaaaaacaaaacgatattcattcattcaaatcgatagagt 40487581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 575
Target Start/End: Original strand, 628715 - 628754
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  628715 gacaaaaacaaaatgatattcattcattcaaattgataga 628754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 2342748 - 2342713
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  2342748 gacaaaaacaaaatgatattcattcattcaaatcga 2342713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 4178865 - 4178830
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  4178865 gacaaaaacaaaatgatattcattcattcaaatcga 4178830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 25162736 - 25162701
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  25162736 gacaaaaacaaaatgatattcattcattcaaatcga 25162701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Original strand, 38854813 - 38854848
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  38854813 gacaaaaacaaaatgatattcattcattcaaatcga 38854848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 575
Target Start/End: Original strand, 47041839 - 47041878
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  47041839 gacaaaaacaaaatgatattcattcattcaaatagataga 47041878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 575
Target Start/End: Complemental strand, 29503760 - 29503722
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  29503760 acaaaaacaaaatgatattcattcattcaaatcaataga 29503722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 571
Target Start/End: Complemental strand, 32607768 - 32607734
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    |||||||||||||||| ||||||||||||||||||    
T  32607768 acaaaaacaaaatgatattcattcattcaaatcga 32607734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 571
Target Start/End: Original strand, 44907174 - 44907208
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    |||||||||||||||| ||||||||||||||||||    
T  44907174 acaaaaacaaaatgatattcattcattcaaatcga 44907208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 539 - 577
Target Start/End: Original strand, 45568239 - 45568277
Alignment:
Q  539 aaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  45568239 aaaaacaaaacgatattcattcattcaaatcgatagagt 45568277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 571
Target Start/End: Original strand, 50611193 - 50611227
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    |||||||||||||||| ||||||||||||||||||    
T  50611193 acaaaaacaaaatgatattcattcattcaaatcga 50611227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 573
Target Start/End: Original strand, 9797325 - 9797362
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgata 573  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  9797325 gacaaaaacaaaacgatattcattcattcaaatcgata 9797362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 10108533 - 10108492
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||| |||| ||| ||||||||||||||||||||||||    
T  10108533 gacaaaaataaaacgatattcattcattcaaatcgatagagt 10108492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 10229773 - 10229732
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||| |||| ||| ||||||||||||||||||||||||    
T  10229773 gacaaaaataaaacgatattcattcattcaaatcgatagagt 10229732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 10233367 - 10233326
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||| |||| ||| ||||||||||||||||||||||||    
T  10233367 gacaaaaataaaacgatattcattcattcaaatcgatagagt 10233326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 36910557 - 36910598
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||| |||| ||| ||||||||||||||||||||||||    
T  36910557 gacaaaaataaaacgatattcattcattcaaatcgatagagt 36910598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 577
Target Start/End: Original strand, 43488386 - 43488423
Alignment:
Q  540 aaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  43488386 aaaacaaaacgatattcattcattcaaatcgatagagt 43488423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 575
Target Start/End: Original strand, 3085085 - 3085121
Alignment:
Q  539 aaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  3085085 aaaaacaaaatgatattcattcattcaaattgataga 3085121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 9998763 - 9998723
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||| |||| ||| ||||||||||||||||||||||||    
T  9998763 acaaaaataaaacgatattcattcattcaaatcgatagagt 9998723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 568
Target Start/End: Complemental strand, 17238105 - 17238073
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaat 568  Q
    ||||||||||||||||| |||||||||||||||    
T  17238105 gacaaaaacaaaatgatattcattcattcaaat 17238073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 23799740 - 23799780
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||| ||| ||||||||||||||| ||||||||    
T  23799740 acaaaaacaaaacgatattcattcattcaaattgatagagt 23799780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 573
Target Start/End: Complemental strand, 46178867 - 46178831
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgata 573  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  46178867 acaaaaacaaaacgattttcattcattcaaatcgata 46178831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 46304313 - 46304353
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||| ||| ||||||||||||||| ||||||||    
T  46304313 acaaaaacaaaacgatattcattcattcaaattgatagagt 46304353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 536 - 575
Target Start/End: Original strand, 1236487 - 1236526
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  1236487 gacaaaaacaaaatgatattcattcattcaaatcgataga 1236526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 10377974 - 10377933
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  10377974 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 10377933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 575
Target Start/End: Complemental strand, 3240681 - 3240642
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  3240681 gacaaaaacaaaacgatgttcattcattcaaattgataga 3240642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Original strand, 14906697 - 14906732
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  14906697 gacaaaaacaaaatgatattcattcattcaaatcga 14906732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 575
Target Start/End: Original strand, 30568110 - 30568149
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  30568110 gacaaaaacaaaatgatattcattcattcaaattgataga 30568149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 538 - 577
Target Start/End: Original strand, 40211091 - 40211130
Alignment:
Q  538 caaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  40211091 caaaaacaaaacgatattcattcattcaaatcgatagagt 40211130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 539 - 577
Target Start/End: Original strand, 33214463 - 33214501
Alignment:
Q  539 aaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  33214463 aaaaacaaaacgatattcattcattcaaatcgatagagt 33214501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 7883030 - 7883071
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| |||||||||||||||| |||||||    
T  7883030 gacaaaaacaaaacgatattcattcattcaaatcaatagagt 7883071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 23230943 - 23230902
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||| ||||| ||| ||||||||||||||||||||||||    
T  23230943 gacaaaagcaaaacgatattcattcattcaaatcgatagagt 23230902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 574
Target Start/End: Complemental strand, 28240150 - 28240113
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatag 574  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  28240150 acaaaaacaaactgatattcattcattcaaatcgatag 28240113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 575
Target Start/End: Original strand, 201148 - 201186
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  201148 acaaaaacaaaatgatattcattcattcaaatcgataga 201186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 28044547 - 28044588
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  28044547 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 28044588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 48316610 - 48316651
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  48316610 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 48316651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 12141099 - 12141139
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  12141099 acaaaaacaaaacgatattcattcattcaaatcgatagagt 12141139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 536 - 576
Target Start/End: Complemental strand, 21266695 - 21266655
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagag 576  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  21266695 gacaaaaacaaaatgatattcattcattcaaatcgagagag 21266655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 48061721 - 48061681
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  48061721 acaaaaacaaaacgatattcattcattcaaatcgatagagt 48061681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Original strand, 1448606 - 1448641
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  1448606 gacaaaaacaaaatgatattcattcattcaaatcga 1448641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Original strand, 12502026 - 12502061
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  12502026 gacaaaaacaaaatgatattcattcattcaaatcga 12502061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Original strand, 12527660 - 12527695
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  12527660 gacaaaaacaaaatgatattcattcattcaaatcga 12527695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Original strand, 14627672 - 14627707
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  14627672 gacaaaaacaaaatgatattcattcattcaaatcga 14627707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 26492668 - 26492633
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  26492668 gacaaaaacaaaatgatattcattcattcaaatcga 26492633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Original strand, 42066836 - 42066871
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  42066836 gacaaaaacaaaatgatattcattcattcaaatcga 42066871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 571
Target Start/End: Complemental strand, 32684970 - 32684936
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    |||||||||||||||| ||||||||||||||||||    
T  32684970 acaaaaacaaaatgatattcattcattcaaatcga 32684936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 571
Target Start/End: Complemental strand, 34774013 - 34773979
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    |||||||||||||||| ||||||||||||||||||    
T  34774013 acaaaaacaaaatgatattcattcattcaaatcga 34773979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 571
Target Start/End: Original strand, 45198808 - 45198842
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    |||||||||||||||| ||||||||||||||||||    
T  45198808 acaaaaacaaaatgatattcattcattcaaatcga 45198842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 17611694 - 17611653
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  17611694 gacaaaaacaaaacgatattcattcattcaaattgatagagt 17611653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 3267009 - 3267049
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||||||| ||||||||||||||| | ||||||    
T  3267009 acaaaaacaaaatgatattcattcattcaaattgttagagt 3267049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 573
Target Start/End: Complemental strand, 20083640 - 20083604
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgata 573  Q
    |||||||||||||||| || |||||||||||||||||    
T  20083640 acaaaaacaaaatgatatttattcattcaaatcgata 20083604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 23425147 - 23425179
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaat 568  Q
    ||||||||||||||||| |||||||||||||||    
T  23425147 gacaaaaacaaaatgatattcattcattcaaat 23425179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 35261599 - 35261559
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||| |||||| ||||||||||||||| ||||||||    
T  35261599 acaaaaacagaatgatattcattcattcaaattgatagagt 35261559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 572
Target Start/End: Original strand, 39328585 - 39328621
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgat 572  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  39328585 gacaaaaacaaaacgatattcattcattcaaatcgat 39328621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 6011929 - 6011970
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  6011929 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 6011970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 9113516 - 9113557
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  9113516 gacaaaaacaaaacgatattcattcattcaaatcgatagagt 9113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 24229576 - 24229616
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  24229576 acaaaaacaaaacgatattcattcattcaaatcgatagagt 24229616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 575
Target Start/End: Original strand, 8088004 - 8088043
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  8088004 gacaaaaacaaaatgatattcattcattcaaattgataga 8088043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 575
Target Start/End: Complemental strand, 13422229 - 13422190
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  13422229 gacaaaaacaaaatgatattcattcattcaaattgataga 13422190  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 575
Target Start/End: Original strand, 14726252 - 14726291
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  14726252 gacaaaaacaaaacgatattcattcattcaaatcgataga 14726291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Original strand, 21060057 - 21060092
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  21060057 gacaaaaacaaaatgatattcattcattcaaatcga 21060092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 571
Target Start/End: Complemental strand, 34882022 - 34881987
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||||| ||||||||||||||||||    
T  34882022 gacaaaaacaaaatgatattcattcattcaaatcga 34881987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 575
Target Start/End: Complemental strand, 38007654 - 38007615
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  38007654 gacaaaaacaaaacgatattcattcattcaaatcgataga 38007615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 571
Target Start/End: Complemental strand, 781692 - 781658
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcga 571  Q
    |||||||||||||||| ||||||||||||||||||    
T  781692 acaaaaacaaaatgatattcattcattcaaatcga 781658  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 539 - 577
Target Start/End: Original strand, 8096293 - 8096331
Alignment:
Q  539 aaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  8096293 aaaaacaaaacgatattcattcattcaaatcgatagagt 8096331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 575
Target Start/End: Complemental strand, 35851093 - 35851055
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  35851093 acaaaaacaaaatgatattcattcattcaaatcaataga 35851055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 13007526 - 13007485
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  13007526 gacaaaaacaaaacgatattcattcattcaaattgatagagt 13007485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 571
Target Start/End: Original strand, 18677242 - 18677275
Alignment:
Q  538 caaaaacaaaatgatgttcattcattcaaatcga 571  Q
    ||||||||||||||| ||||||||||||||||||    
T  18677242 caaaaacaaaatgatattcattcattcaaatcga 18677275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 26825727 - 26825686
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    |||||||| |||| ||| ||||||||||||||||||||||||    
T  26825727 gacaaaaataaaacgatattcattcattcaaatcgatagagt 26825686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 27576160 - 27576200
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||  || ||||||||||||||||||||||||    
T  27576160 acaaaaacaaaacaatattcattcattcaaatcgatagagt 27576200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 568
Target Start/End: Complemental strand, 30371926 - 30371894
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaat 568  Q
    ||||||||||||||||| |||||||||||||||    
T  30371926 gacaaaaacaaaatgatattcattcattcaaat 30371894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 573
Target Start/End: Original strand, 36057103 - 36057139
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgata 573  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  36057103 acaaaaataaaatgatattcattcattcaaatcgata 36057139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0884 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 575
Target Start/End: Original strand, 1765 - 1803
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatcgataga 575  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  1765 acaataacaaaatgatattcattcattcaaatcgataga 1803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 1670 - 1629
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaatcgatagagt 577  Q
    ||||||||||||| ||| |||||||||||||||| |||||||    
T  1670 gacaaaaacaaaacgatattcattcattcaaatcaatagagt 1629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 16094 - 16126
Alignment:
Q  536 gacaaaaacaaaatgatgttcattcattcaaat 568  Q
    ||||||||||||||||| |||||||||||||||    
T  16094 gacaaaaacaaaatgatattcattcattcaaat 16126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 569
Target Start/End: Original strand, 83212 - 83244
Alignment:
Q  537 acaaaaacaaaatgatgttcattcattcaaatc 569  Q
    |||||||||||||||| ||||||||||||||||    
T  83212 acaaaaacaaaatgatattcattcattcaaatc 83244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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