View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_16 (Length: 558)
Name: NF8890_low_16
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 13 - 527
Target Start/End: Original strand, 48545708 - 48546222
Alignment:
| Q |
13 |
tggacatcatagcaaggatccttgcaatggtacctccatggacacgtgtttatagagttcagcgggatattccaatgcctttggtgacctctggggttga |
112 |
Q |
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| T |
48545708 |
tggacatcatagcaaggatccttgcaatggtacctccatggacacgtgtttatagagttcagcgggatattccaatgcctttggtgacctctggggttga |
48545807 |
T |
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| Q |
113 |
gaaagggaatctaagggagttagcattagctcgaatggaagacttgggtttaaaatgtcgtgatgttcgcaccagagaagctggaatccaggtaattatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48545808 |
gaaagggaatctaagggagttagcattagctcgaatggaagacttgggtttaaaatgtcgtgatgttcgcaccagagaagctggaatccaggtaattatc |
48545907 |
T |
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| Q |
213 |
tagaaccaatctcgtctggaaattttatttaactaagatttttaaatcttgacacactttgttaaccagtattattttggagcaccaaccgacattctgt |
312 |
Q |
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| T |
48545908 |
tagaaccaatcttgtctggaaattttatttaactaagatttttaaatcttgacacactttgttaaccagtattattttggagcaccaaccgacattctgt |
48546007 |
T |
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| Q |
313 |
gtttctttgtaggatattcatcaccaaattaaaccagaagaggtggaacttgttcgtcgtgattatatggcaaatgaaggttgggaaacatttttgtcat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48546008 |
gtttctttgtaggatattcatcaccaaattaaaccagaagaggtggaacttgttcgtcgtgattatatggcaaatgaaggttgggaaacatttttgtcat |
48546107 |
T |
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| Q |
413 |
atgaagatacacggcaggtgattttaccttctttcctcagcctctcttattagtgcctgtccttttgtctatcatcattttctactttgagttgtaacgt |
512 |
Q |
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| T |
48546108 |
acgaagatacacggcaggtgattttaccttctttcctcagcctctcttaatagtgcctgtccttttgtctatcatcattttctactttgagttgtaacgt |
48546207 |
T |
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| Q |
513 |
gtgagtctagtttgt |
527 |
Q |
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||||||||||||||| |
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| T |
48546208 |
gtgagtctagtttgt |
48546222 |
T |
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