View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8890_low_2 (Length: 1037)

Name: NF8890_low_2
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8890_low_2
NF8890_low_2
[»] chr5 (3 HSPs)
chr5 (12-1027)||(14312421-14313435)
chr5 (675-817)||(2310807-2310949)
chr5 (720-816)||(28661249-28661345)
[»] chr3 (4 HSPs)
chr3 (631-814)||(27009263-27009442)
chr3 (710-760)||(2004336-2004386)
chr3 (368-449)||(27008875-27008958)
chr3 (466-526)||(27008956-27009016)
[»] chr4 (4 HSPs)
chr4 (379-522)||(37127894-37128037)
chr4 (720-818)||(15333039-15333130)
chr4 (631-739)||(37127520-37127626)
chr4 (720-815)||(37500791-37500886)
[»] chr7 (4 HSPs)
chr7 (631-815)||(35063908-35064090)
chr7 (382-526)||(35064353-35064497)
chr7 (682-740)||(17765670-17765728)
chr7 (708-758)||(44266581-44266631)
[»] chr8 (4 HSPs)
chr8 (685-815)||(518879-519009)
chr8 (712-768)||(16920519-16920575)
chr8 (368-419)||(519404-519457)
chr8 (682-740)||(9583908-9583966)
[»] chr1 (3 HSPs)
chr1 (720-812)||(51739557-51739649)
chr1 (718-816)||(49835076-49835174)
chr1 (725-814)||(43276554-43276643)


Alignment Details
Target: chr5 (Bit Score: 924; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 924; E-Value: 0
Query Start/End: Original strand, 12 - 1027
Target Start/End: Complemental strand, 14313435 - 14312421
Alignment:
Q  12 tggacatcacggtattgttttataatttataatcttgccacactaatttgttttttaagctttttaattagaaactgcggtcatttggtagtcatttttg 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  14313435 tggacatcacggtattgttttagaatttataatcttgccacactaatttgttttttaagcttgtcaattagaaactgcggtcatttggtagtcatttttg 14313336  T
Q  112 gtttggctttctcgtctactttggttctactcaatgtttcttggttgcatcaggctctatgttccagaccgttgttaatctagttttcaatagatatagg 211  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14313335 gtttggctttctcgtatactttggttctactcaatgtttcttggttgcatcaggctcaatgttccagaccgttgttaatctagttttcaatagatatagg 14313236  T
Q  212 catacactctgaccagtgcaaaatctgatattaagtagttcttatttatttgaggctatgtttcaattcagcattcagacatttgttgttccaagaatgg 311  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14313235 catacactctgaccagtgcaaaatctgatattaagtagtgcttatttatttgaggctatgtttcaattcagcattcagacatttgttgttccaagaatgg 14313136  T
Q  312 ttattaagagcgtgatatagattgtgagatctcatgtgttattctctctccaccgtgccggagcggtgcgcgcagaggaagatcttggaatcgtgggagc 411  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14313135 ttgttaagagcgtgatatagattgtgagatctcatgtgtttttctctctccaccgtgccggagcggtgcgcgcagaggaagatcttggaatcgtgggagc 14313036  T
Q  412 ggcgctttcccttgcgctgttttcacacgttctcaacctgggttgtacatctcgacccggctgacccggaaaagctcccaccttcacagcccagtttcac 511  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14313035 ggcgctttcccttgcgccgttttcacacgttctcaacctgggttgtacatctcgacccggctgacccggaacagctcccaccttcacagcccagtttcac 14312936  T
Q  512 atgttttgacttggagtttgacccgtttatcattgaaagggagggatacattgaacttgcattttctttttggactcagtgggttttaagtgagagaaat 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14312935 atgttttgacttggagtttgacccgtttatcattgaaagggagggatacattgaacttgcattttttttttggactcagtgggttttaagtgagagaaat 14312836  T
Q  612 tgcattgtataatttatgttttgttcaaactctcatctttatgattaaattaacnnnnnnnnnttatggtaaggttattttcctcagttattcctgtaat 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||| ||||    
T  14312835 tgcattgtataatttatgttttgttcaaactctcatctttatgattaaattaac-aaaaaaaattatggtaaggttattttcctcagttattcctataat 14312737  T
Q  712 tttgtgtatttggtgggatcttacgatctgtgttacgatcttacgatttgtgcttttttaaaacccaaacgatatttggtgaaatcccgagtttgtcaac 811  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14312736 tttgtgtatttggtgggatcttacgatctgtgttacgatcttacgatttgcgcttttttaaaacccaaacgatatttggtgaaatcccgagtttgtcaac 14312637  T
Q  812 catggttccaaattttgcaatcagttgcctcaaattttctattggctgaatttattttgacaatcttatctggaattcaattatactatcggaatagttt 911  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14312636 catggttccaaattttgcaatcagttgcctcaaattttctattggctgaatttattttgacaatcttatctggaattcaattatactatcggaatagttt 14312537  T
Q  912 tcagcaataactaaaagttatggtaatgattattgacaacttaaaggttctaatattaagtctgatacgaggaacaatatctgagacttcactatttaat 1011  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14312536 tcagcaataactaaaagttatggtaatgattattgacaacttaaaggttctaatattaagtctgatacgaggaacaatatctgagacttcactgtttaat 14312437  T
Q  1012 gttagattatgatgtc 1027  Q
    ||| ||||||||||||    
T  14312436 gtttgattatgatgtc 14312421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 675 - 817
Target Start/End: Original strand, 2310807 - 2310949
Alignment:
Q  675 ttatggtaaggttattttcctcagttattcctgtaattttgtgtatttggtgggatcttacgatctgtgttacgatcttacgatttgtgcttttttaaaa 774  Q
    ||||| |||||||||||| ||  ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||||   |||||| || |    
T  2310807 ttatgttaaggttatttttctttgttattcctataattttgtgtatttggtgggatcttacgatccgtgttacgatcctgcgatttacactttttcaata 2310906  T
Q  775 cccaaacgatatttggtgaaatcccgagtttgtcaaccatggt 817  Q
    |||||||||| |||| || ||||||||||||| ||||||||||    
T  2310907 cccaaacgatctttgatggaatcccgagtttgacaaccatggt 2310949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 720 - 816
Target Start/End: Complemental strand, 28661345 - 28661249
Alignment:
Q  720 tttggtgggatcttacgatctgtgttacgatcttacgatttgtgcttttttaaaacccaaacgatatttggtgaaatcccgagtttgtcaaccatgg 816  Q
    |||||||||||||||||||||  ||||||||||||||||||  | ||||| || | ||||||||| || ||||| ||||||| |||  |||||||||    
T  28661345 tttggtgggatcttacgatcttggttacgatcttacgatttacgatttttcaatatccaaacgatcttaggtgagatcccgattttaacaaccatgg 28661249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 631 - 814
Target Start/End: Original strand, 27009263 - 27009442
Alignment:
Q  631 tttgttcaaactctcatctttatgattaaattaacnnnnnnnnnttatggtaaggttattttcctcagttattcctgtaattttgtgtatttggtgggat 730  Q
    |||| |||||||||||||||||||||| |||||||         | ||||||| |||||||| || |||||||||| |||||||||||  |||||| |||    
T  27009263 tttggtcaaactctcatctttatgattgaattaactaaaaaa--tgatggtaaagttatttttcttagttattcctataattttgtgt--ttggtgagat 27009358  T
Q  731 cttacgatctgtgttacgatcttacgatttgtgcttttttaaaacccaaacgatatttggtgaaatcccgagtttgtcaaccat 814  Q
    ||||||||| | ||||||||| ||| ||||| |||||||| | ||||||||||| ||||||  |||||| |||||| |||||||    
T  27009359 cttacgatccgagttacgatcctactatttgcgctttttttacacccaaacgatctttggttgaatcccaagtttgacaaccat 27009442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 710 - 760
Target Start/End: Complemental strand, 2004386 - 2004336
Alignment:
Q  710 attttgtgtatttggtgggatcttacgatctgtgttacgatcttacgattt 760  Q
    ||||||| |||| |||||||||||||||||  |||||||||||||||||||    
T  2004386 attttgtctattaggtgggatcttacgatccttgttacgatcttacgattt 2004336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 27008875 - 27008958
Alignment:
Q  368 gccggagcggtg--cgcgcagaggaagatcttggaatcgtgggagcggcgctttcccttgcgctgttttcacacgttctcaacc 449  Q
    ||||||||||||  ||||||||||||||||||| |||||| ||||| |||||||  |  | |||| ||||||||||||| ||||    
T  27008875 gccggagcggtgagcgcgcagaggaagatcttgaaatcgtaggagcagcgctttatcccgtgctggtttcacacgttcttaacc 27008958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 466 - 526
Target Start/End: Original strand, 27008956 - 27009016
Alignment:
Q  466 acccggctgacccggaaaagctcccaccttcacagcccagtttcacatgttttgacttgga 526  Q
    ||||||||||||||||| | | | |||||| |||||| ||||||||| |||||||||||||    
T  27008956 acccggctgacccggaacaacccgcacctttacagcctagtttcacacgttttgacttgga 27009016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 379 - 522
Target Start/End: Complemental strand, 37128037 - 37127894
Alignment:
Q  379 gcgcgcagaggaagatcttggaatcgtgggagcggcgctttcccttgcgctgttttcacacgttctcaacctgggttgtacatctcgacccggctgaccc 478  Q
    ||||| ||||||||||||||||||||| ||| | |||||||  |  | |||| ||||||||||||| |||| |||| | |||||| ||||||| ||||||    
T  37128037 gcgcgtagaggaagatcttggaatcgtaggatcagcgctttatcccgtgctggtttcacacgttcttaacccgggtcgcacatcttgacccggttgaccc 37127938  T
Q  479 ggaaaagctcccaccttcacagcccagtttcacatgttttgact 522  Q
    |||| | | | |||||| ||||||||||||| || |||||||||    
T  37127937 ggaacaacccgcacctttacagcccagtttcgcacgttttgact 37127894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 720 - 818
Target Start/End: Complemental strand, 15333130 - 15333039
Alignment:
Q  720 tttggtgggatcttacgatctgtgttacgatcttacgatttgtgcttttttaaaacccaaacgatatttggtgaaatcccgagtttgtcaaccatggtt 818  Q
    |||||||||||||||||||||  |||||||||||||||       ||||| || ||||||||||| || ||||| ||||||| |||| |||||||||||    
T  15333130 tttggtgggatcttacgatcttggttacgatcttacga-------tttttcaatacccaaacgatcttaggtgagatcccgattttgacaaccatggtt 15333039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 631 - 739
Target Start/End: Complemental strand, 37127626 - 37127520
Alignment:
Q  631 tttgttcaaactctcatctttatgattaaattaacnnnnnnnnnttatggtaaggttattttcctcagttattcctgtaattttgtgtatttggtgggat 730  Q
    |||| |||||||||||||||||||||| |||||||         | ||||||| |||||||| || |||||||||| ||||||||| | ||||||| |||    
T  37127626 tttggtcaaactctcatctttatgattgaattaactaaaaaa--tgatggtaaagttatttttcttagttattcctataattttgtctgtttggtgagat 37127529  T
Q  731 cttacgatc 739  Q
    |||||||||    
T  37127528 cttacgatc 37127520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 720 - 815
Target Start/End: Complemental strand, 37500886 - 37500791
Alignment:
Q  720 tttggtgggatcttacgatctgtgttacgatcttacgatttgtgcttttttaaaacccaaacgatatttggtgaaatcccgagtttgtcaaccatg 815  Q
    ||||||||||||||||||||| |||||||||| ||||||||  | ||||| || |||| |  ||| || ||||| ||||||| |||| ||||||||    
T  37500886 tttggtgggatcttacgatctttgttacgatcctacgatttacgatttttcaataccctagagatcttaggtgagatcccgattttgacaaccatg 37500791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 631 - 815
Target Start/End: Complemental strand, 35064090 - 35063908
Alignment:
Q  631 tttgttcaaactctcatctttatgattaaattaacnnnnnnnnnttatggtaaggttattttcctcagttattcctgtaattttgtgtatttggtgggat 730  Q
    |||| |||||||||||||||||||||| |||||||         | ||||||| |||||||| || |||||||||| ||||||||| | ||||||| |||    
T  35064090 tttggtcaaactctcatctttatgattgaattaactaaaaaa--tgatggtaaagttatttttcttagttattcctataattttgtctgtttggtgagat 35063993  T
Q  731 cttacgatctgtgttacgatcttacgatttgtgcttttttaaaacccaaacgatatttggtgaaatcccgagtttgtcaaccatg 815  Q
    ||||||||| | ||||||||| || |||||  |||||||| | || |||||| | ||||||  |||||| | |||| ||||||||    
T  35063992 cttacgatccgagttacgatcctatgatttacgctttttttacacgcaaacggtctttggttgaatcccaaatttgacaaccatg 35063908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 382 - 526
Target Start/End: Complemental strand, 35064497 - 35064353
Alignment:
Q  382 cgcagaggaagatcttggaatcgtgggagcggcgctttcccttgcgctgttttcacacgttctcaacctgggttgtacatctcgacccggctgacccgga 481  Q
    |||||||||||||||||||||||| ||| | |||||||  |  | |||| ||||||||||||| |||| |||| | |||||| ||||||| ||||| |||    
T  35064497 cgcagaggaagatcttggaatcgtaggatcagcgctttatcccgtgctggtttcacacgttcttaacccgggtcgcacatcttgacccggttgacctgga 35064398  T
Q  482 aaagctcccaccttcacagcccagtttcacatgttttgacttgga 526  Q
    | | | | |||||| ||||||||||||  || |||||||||||||    
T  35064397 acaacccgcacctttacagcccagttttgcacgttttgacttgga 35064353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 682 - 740
Target Start/End: Original strand, 17765670 - 17765728
Alignment:
Q  682 aaggttattttcctcagttattcctgtaattttgtgtatttggtgggatcttacgatct 740  Q
    ||||||||||| || |||||||  | ||||||||| | |||||||||||||||||||||    
T  17765670 aaggttatttttcttagttatttttataattttgtctgtttggtgggatcttacgatct 17765728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 708 - 758
Target Start/End: Complemental strand, 44266631 - 44266581
Alignment:
Q  708 taattttgtgtatttggtgggatcttacgatctgtgttacgatcttacgat 758  Q
    ||||||||| |||| |||||||||||||||||  |||||||||| ||||||    
T  44266631 taattttgtctattaggtgggatcttacgatccttgttacgatcctacgat 44266581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 3e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 685 - 815
Target Start/End: Complemental strand, 519009 - 518879
Alignment:
Q  685 gttattttcctcagttattcctgtaattttgtgtatttggtgggatcttacgatctgtgttacgatcttacgatttgtgcttttttaaaacccaaacgat 784  Q
    |||||||| || || ||||||| ||||||||| | ||||||| |||||||||||    ||||||||||||||||||  |||||||| |  ||||||||||    
T  519009 gttatttttcttagctattcctataattttgtctgtttggtgagatcttacgattctagttacgatcttacgatttacgctttttttacgcccaaacgat 518910  T
Q  785 atttggtgaaatcccgagtttgtcaaccatg 815  Q
     ||||||  |||||||| |||| ||||||||    
T  518909 ctttggttgaatcccgaatttgacaaccatg 518879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 712 - 768
Target Start/End: Complemental strand, 16920575 - 16920519
Alignment:
Q  712 tttgtgtatttggtgggatcttacgatctgtgttacgatcttacgatttgtgctttt 768  Q
    ||||| |||||||||||||||||||||| ||||||| ||| |||||| | |||||||    
T  16920575 tttgtctatttggtgggatcttacgatccgtgttacaatcctacgatctatgctttt 16920519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 368 - 419
Target Start/End: Complemental strand, 519457 - 519404
Alignment:
Q  368 gccggagcggtgcgcgca--gaggaagatcttggaatcgtgggagcggcgcttt 419  Q
    |||||||||||| |||||  |||||||||||||||||||| ||||| |||||||    
T  519457 gccggagcggtgagcgcacagaggaagatcttggaatcgtaggagcagcgcttt 519404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 682 - 740
Target Start/End: Original strand, 9583908 - 9583966
Alignment:
Q  682 aaggttattttcctcagttattcctgtaattttgtgtatttggtgggatcttacgatct 740  Q
    ||||||||||| || |||||||  | ||||||||| | |||||||||||||||||||||    
T  9583908 aaggttatttttcttagttatttttataattttgtctgtttggtgggatcttacgatct 9583966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 720 - 812
Target Start/End: Original strand, 51739557 - 51739649
Alignment:
Q  720 tttggtgggatcttacgatctgtgttacgatcttacgatttgtgcttttttaaaacccaaacgatatttggtgaaatcccgagtttgtcaacc 812  Q
    ||||||||||||||||||||| |||||||||| ||||||||  | ||||| || ||||||||||| || ||||| ||||||| |||| |||||    
T  51739557 tttggtgggatcttacgatctttgttacgatcctacgatttacgatttttcaatacccaaacgatcttaggtgagatcccgattttgacaacc 51739649  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 718 - 816
Target Start/End: Original strand, 49835076 - 49835174
Alignment:
Q  718 tatttggtgggatcttacgatctgtgttacgatcttacgatttgtgcttttttaaaacccaaacgatatttggtgaaatcccgagtttgtcaaccatgg 816  Q
    ||||||||||||||||||||||| |||||||||| |||||| |  |||||||  | |||| |||||| ||| |||| ||||||| |||| |||||||||    
T  49835076 tatttggtgggatcttacgatctttgttacgatcctacgatctacgctttttccataccccaacgatctttagtgagatcccgattttgacaaccatgg 49835174  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 725 - 814
Target Start/End: Original strand, 43276554 - 43276643
Alignment:
Q  725 tgggatcttacgatctgtgttacgatcttacgatttgtgcttttttaaaacccaaacgatatttggtgaaatcccgagtttgtcaaccat 814  Q
    ||||||||||||||| ||||||||||| || |||||  ||| |||  |  |||||||||| || ||||  |||||||||||| |||||||    
T  43276554 tgggatcttacgatccgtgttacgatcctatgatttacgctctttctatgcccaaacgatcttcggtgggatcccgagtttgacaaccat 43276643  T

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