View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8890_low_23 (Length: 521)

Name: NF8890_low_23
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8890_low_23
NF8890_low_23
[»] chr2 (6 HSPs)
chr2 (156-389)||(1901325-1901571)
chr2 (20-103)||(1901194-1901277)
chr2 (316-363)||(40874094-40874141)
chr2 (330-366)||(1707744-1707780)
chr2 (324-364)||(37413200-37413240)
chr2 (324-364)||(41859852-41859892)
[»] chr5 (6 HSPs)
chr5 (322-366)||(38043495-38043539)
chr5 (321-360)||(6025305-6025344)
chr5 (321-366)||(42515804-42515849)
chr5 (322-366)||(3156532-3156576)
chr5 (322-366)||(16193105-16193149)
chr5 (322-366)||(28447491-28447535)
[»] chr1 (4 HSPs)
chr1 (335-366)||(40735024-40735055)
chr1 (321-366)||(30003198-30003243)
chr1 (330-366)||(24529691-24529727)
chr1 (322-366)||(43840344-43840388)
[»] chr3 (5 HSPs)
chr3 (330-364)||(32909322-32909356)
chr3 (322-364)||(34326004-34326046)
chr3 (323-364)||(28093353-28093394)
chr3 (334-366)||(19126696-19126728)
chr3 (330-366)||(44968183-44968219)
[»] chr8 (7 HSPs)
chr8 (322-363)||(8982565-8982606)
chr8 (322-363)||(33620896-33620937)
chr8 (322-389)||(6038266-6038338)
chr8 (330-366)||(15188905-15188941)
chr8 (330-366)||(21557439-21557475)
chr8 (322-366)||(26886061-26886105)
chr8 (322-366)||(32115425-32115469)
[»] chr7 (2 HSPs)
chr7 (329-366)||(7908598-7908635)
chr7 (322-366)||(24226000-24226044)
[»] chr6 (2 HSPs)
chr6 (335-364)||(12333589-12333618)
chr6 (335-364)||(24269894-24269923)
[»] scaffold0350 (1 HSPs)
scaffold0350 (322-389)||(1246-1318)
[»] chr4 (5 HSPs)
chr4 (330-366)||(8415514-8415550)
chr4 (322-366)||(21465609-21465653)
chr4 (322-366)||(43722763-43722807)
chr4 (316-364)||(44221439-44221487)
chr4 (330-366)||(51465343-51465379)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 156 - 389
Target Start/End: Original strand, 1901325 - 1901571
Alignment:
Q  156 tgcagctacttctactctgatctgatttcttttctattcacttataaacgaaaaagaagtaatatttattttctttttaaggagaaaaagaagtaacact 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  1901325 tgcagctacttctactctgatctgatttcttttctattcacttataaacgaaaaagaagtaatatttattttctttttaaggagaaaaaggagtaatact 1901424  T
Q  256 cattttgatactaaatgtgaatattagaccttcgattgat-cgaaattttaaaaatag------------tcgatgtgatcgtgaatttaattcagttag 342  Q
    |||||||||  ||||||||||||| |||| |||||||||| |  | ||||||||||||            | ||||||||| ||| ||||| ||||||||    
T  1901425 cattttgatcttaaatgtgaatataagacattcgattgatactcatttttaaaaatagttttacgtgtaatagatgtgatcatgagtttaactcagttag 1901524  T
Q  343 tatggacaatgcataaaatatgtatggagttcaaactccggccacca 389  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||    
T  1901525 tatgaacaatgcataaaatatatatggagttcaaactgcggccacca 1901571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 1901194 - 1901277
Alignment:
Q  20 atccggtgcagtggacagtaacgttttgaccaggagttggcttaggaccgtttccaggtcgaacgatttgcttctcaactccca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1901194 atccggtgcagtggacagtaacgttttgaccaggagttggcttaggaccgtttccaggtcgaacgatttgcttctcaactccca 1901277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 40874141 - 40874094
Alignment:
Q  316 atgtgatcgtgaatttaattcagttagtatggacaatgcataaaatat 363  Q
    |||| ||||||||||||| ||||||  |||||||||||||||||||||    
T  40874141 atgtcatcgtgaatttaactcagttgatatggacaatgcataaaatat 40874094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 1707744 - 1707780
Alignment:
Q  330 ttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||||||||||||||| |||||| |||||||||||||    
T  1707744 ttaattcagttagtatagacaatacataaaatatgta 1707780  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 364
Target Start/End: Complemental strand, 37413240 - 37413200
Alignment:
Q  324 gtgaatttaattcagttagtatggacaatgcataaaatatg 364  Q
    ||||||||| ||||||| ||| |||||||||||||||||||    
T  37413240 gtgaatttagttcagttggtagggacaatgcataaaatatg 37413200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 364
Target Start/End: Original strand, 41859852 - 41859892
Alignment:
Q  324 gtgaatttaattcagttagtatggacaatgcataaaatatg 364  Q
    |||| ||||| |||||| |||||||||||||||||||||||    
T  41859852 gtgagtttaactcagttggtatggacaatgcataaaatatg 41859892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 38043495 - 38043539
Alignment:
Q  322 tcgtgaatttaattcagttagtatggacaatgcataaaatatgta 366  Q
    ||||||| ||||||||||| ||||||| |||||||||||||||||    
T  38043495 tcgtgaacttaattcagtttgtatggataatgcataaaatatgta 38043539  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 360
Target Start/End: Original strand, 6025305 - 6025344
Alignment:
Q  321 atcgtgaatttaattcagttagtatggacaatgcataaaa 360  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  6025305 atcgtgagtttagttcagttagtatggacaatgcataaaa 6025344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 42515804 - 42515849
Alignment:
Q  321 atcgtgaatttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||||||  ||||||||||| ||||||||||||||||| |||||||    
T  42515804 atcgtgagcttaattcagttggtatggacaatgcataatatatgta 42515849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 3156532 - 3156576
Alignment:
Q  322 tcgtgaatttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||||| ||||| |||||| ||||||| |||||||||||||||||    
T  3156532 tcgtgagtttaactcagttggtatggataatgcataaaatatgta 3156576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 16193105 - 16193149
Alignment:
Q  322 tcgtgaatttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||||| |||| ||||||| ||||| |||||||||||||||||||    
T  16193105 tcgtgagtttagttcagttggtatgaacaatgcataaaatatgta 16193149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 28447491 - 28447535
Alignment:
Q  322 tcgtgaatttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||||| ||||| |||||||||| ||||||||||||| |||||||    
T  28447491 tcgtgagtttaactcagttagtagggacaatgcataatatatgta 28447535  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 366
Target Start/End: Complemental strand, 40735055 - 40735024
Alignment:
Q  335 tcagttagtatggacaatgcataaaatatgta 366  Q
    ||||||||||||||||||||||||||||||||    
T  40735055 tcagttagtatggacaatgcataaaatatgta 40735024  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 30003198 - 30003243
Alignment:
Q  321 atcgtgaatttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||||||  ||||||||||| ||||||||||||||||| |||||||    
T  30003198 atcgtgagcttaattcagttggtatggacaatgcataatatatgta 30003243  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 24529691 - 24529727
Alignment:
Q  330 ttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||| |||||||||||||||| |||||||||||||||    
T  24529691 ttaactcagttagtatggacattgcataaaatatgta 24529727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 43840388 - 43840344
Alignment:
Q  322 tcgtgaatttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||||| ||||| ||||||  ||||||||||||||||||||||||    
T  43840388 tcgtgagtttaactcagttgatatggacaatgcataaaatatgta 43840344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 364
Target Start/End: Complemental strand, 32909356 - 32909322
Alignment:
Q  330 ttaattcagttagtatggacaatgcataaaatatg 364  Q
    |||| ||||||||||||||||||||||||||||||    
T  32909356 ttaactcagttagtatggacaatgcataaaatatg 32909322  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 364
Target Start/End: Complemental strand, 34326046 - 34326004
Alignment:
Q  322 tcgtgaatttaattcagttagtatggacaatgcataaaatatg 364  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||    
T  34326046 tcgtgaacttaattcagttggtatggacaatgcataatatatg 34326004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 28093353 - 28093394
Alignment:
Q  323 cgtgaatttaattcagttagtatggacaatgcataaaatatg 364  Q
    ||||| |||||||||||| ||||||||||||||||| |||||    
T  28093353 cgtgagtttaattcagttggtatggacaatgcataatatatg 28093394  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 19126728 - 19126696
Alignment:
Q  334 ttcagttagtatggacaatgcataaaatatgta 366  Q
    ||||||| |||||||||||||||||||||||||    
T  19126728 ttcagttggtatggacaatgcataaaatatgta 19126696  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 44968183 - 44968219
Alignment:
Q  330 ttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||| |||||| |||||||||||||||||||||||||    
T  44968183 ttaactcagttggtatggacaatgcataaaatatgta 44968219  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 8982565 - 8982606
Alignment:
Q  322 tcgtgaatttaattcagttagtatggacaatgcataaaatat 363  Q
    |||||| |||||||||||||||||| ||||||||||| ||||    
T  8982565 tcgtgagtttaattcagttagtatgaacaatgcataatatat 8982606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 33620896 - 33620937
Alignment:
Q  322 tcgtgaatttaattcagttagtatggacaatgcataaaatat 363  Q
    |||||| ||||| |||||||||||||||||||||||| ||||    
T  33620896 tcgtgagtttaactcagttagtatggacaatgcataatatat 33620937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 6038338 - 6038266
Alignment:
Q  322 tcgtgaatttaattcagttagtatggacaatgcataaaatatgta-----tggagttcaaactccggccacca 389  Q
    ||||||| |||  ||||||  |||||||||||||||| |||||||     |||||||||||||||||||||||    
T  6038338 tcgtgaacttagctcagttgatatggacaatgcataatatatgtaaggtctggagttcaaactccggccacca 6038266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 15188905 - 15188941
Alignment:
Q  330 ttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||| |||||||||||||||||||||||| |||||||    
T  15188905 ttaactcagttagtatggacaatgcataatatatgta 15188941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 21557439 - 21557475
Alignment:
Q  330 ttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||| |||||||||||||||||||||||| |||||||    
T  21557439 ttaactcagttagtatggacaatgcataatatatgta 21557475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 26886105 - 26886061
Alignment:
Q  322 tcgtgaatttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||||| ||||| | |||| |||||||||||||||||||||||||    
T  26886105 tcgtgagtttaacttagttggtatggacaatgcataaaatatgta 26886061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 32115469 - 32115425
Alignment:
Q  322 tcgtgaatttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||||| |||| |||||||| |||||||||||||||| |||||||    
T  32115469 tcgtgagtttagttcagttaatatggacaatgcataatatatgta 32115425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Original strand, 7908598 - 7908635
Alignment:
Q  329 tttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  7908598 tttagttcagttggtatggacaatgcataaaatatgta 7908635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 24226044 - 24226000
Alignment:
Q  322 tcgtgaatttaattcagttagtatggacaatgcataaaatatgta 366  Q
    ||||||| |||  |||||| |||||||||||||||||||||||||    
T  24226044 tcgtgaacttagctcagttcgtatggacaatgcataaaatatgta 24226000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 364
Target Start/End: Complemental strand, 12333618 - 12333589
Alignment:
Q  335 tcagttagtatggacaatgcataaaatatg 364  Q
    ||||||||||||||||||||||||||||||    
T  12333618 tcagttagtatggacaatgcataaaatatg 12333589  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 364
Target Start/End: Original strand, 24269894 - 24269923
Alignment:
Q  335 tcagttagtatggacaatgcataaaatatg 364  Q
    ||||||||||||||||||||||||||||||    
T  24269894 tcagttagtatggacaatgcataaaatatg 24269923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0350 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 389
Target Start/End: Original strand, 1246 - 1318
Alignment:
Q  322 tcgtgaatttaattcagttagtatggacaatgcataaaatatgta-----tggagttcaaactccggccacca 389  Q
    ||||||| |||  ||||||  |||||||||||||||| |||||||     |||||||||||||||||||||||    
T  1246 tcgtgaacttagctcagttgatatggacaatgcataatatatgtaaggtctggagttcaaactccggccacca 1318  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 8415550 - 8415514
Alignment:
Q  330 ttaattcagttagtatggacaatgcataaaatatgta 366  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  8415550 ttaattcagttggtatggacaatgcataatatatgta 8415514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 21465609 - 21465653
Alignment:
Q  322 tcgtgaatttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||||| ||||| |||||||||| ||||||||||||| |||||||    
T  21465609 tcgtgagtttaactcagttagtaaggacaatgcataatatatgta 21465653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 43722763 - 43722807
Alignment:
Q  322 tcgtgaatttaattcagttagtatggacaatgcataaaatatgta 366  Q
    |||||| ||||| |||||| ||||||||||||||||| |||||||    
T  43722763 tcgtgagtttaactcagttggtatggacaatgcataatatatgta 43722807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 44221439 - 44221487
Alignment:
Q  316 atgtgatcgtgaatttaattcagttagtatggacaatgcataaaatatg 364  Q
    |||| |||||||  ||||||||||| ||||||||||||||||| |||||    
T  44221439 atgtcatcgtgagcttaattcagttggtatggacaatgcataatatatg 44221487  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 51465343 - 51465379
Alignment:
Q  330 ttaattcagttagtatggacaatgcataaaatatgta 366  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  51465343 ttaattcagttggtatggacaatgcataatatatgta 51465379  T

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