View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8890_low_24 (Length: 515)
Name: NF8890_low_24
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 61 - 306
Target Start/End: Original strand, 24109847 - 24110092
Alignment:
| Q |
61 |
cttcgaaaccaatccacgatcgcattagcagtcaaaagtgctacatgagagaaacaagtgttgagtgtcatccacatgaccacacccgaccacacaacat |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
24109847 |
cttcgaaaccaatccacgatcgcattagcagtcaaaagtgctacatgagagaaacaagtgttgagtgtcatccacatgaccgcacccggccacacaacat |
24109946 |
T |
|
| Q |
161 |
cctccaacgtctcttttaaacaaattgttcgaaacaatccaagtttaatttttaggtaaaacaattattaatcagattatatttaccacatgaccgaatt |
260 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||||||| | |||| |
|
|
| T |
24109947 |
cctccaacgtctcttataaacaaattgttcgaaacaatccgagtttgatttttagataaaacaattattgatcagattatatttaccacatgatcaaatt |
24110046 |
T |
|
| Q |
261 |
ccagattaccaagatatcattttcttaaaaatagagagtagacacc |
306 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24110047 |
ccagattaccgagatatcattttcttaaaaatggagagtagacacc |
24110092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 386 - 499
Target Start/End: Original strand, 24110172 - 24110285
Alignment:
| Q |
386 |
cctcgtttaattttattctttaaaaatcaattaacnnnnnnngtggataagtacaactcatatagaaaataaattcgaaattagaaatagtgtgattgga |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24110172 |
cctcgtttaattttattctttaaaaatcaattgacaaaaaaagtggataagtacaactcatatagaaaataaattcgaaattagaaatagtgcgattgga |
24110271 |
T |
|
| Q |
486 |
acaagtgtatgaat |
499 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24110272 |
acaagtgtatgaat |
24110285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 24107760 - 24107811
Alignment:
| Q |
11 |
acctgtgtaaaatgtaaactgagaaaagtgatatgaaataacctgagtatct |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
24107760 |
acctgtgtaaaatgtaaactgagaaaagtgatctgaaataacctaagtatct |
24107811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 18892127 - 18892063
Alignment:
| Q |
93 |
caaaagtgctacatgagagaaacaagtgttgagtgtcatccacatgaccacacccgaccacacaa |
157 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| ||| | ||||| ||||| || |||||| |
|
|
| T |
18892127 |
caaaagtgctacatgagaggaacaagtgttgaacgtcctcctcgtgaccgcacccaactacacaa |
18892063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 17263285 - 17263221
Alignment:
| Q |
93 |
caaaagtgctacatgagagaaacaagtgttgagtgtcatccacatgaccacacccgaccacacaa |
157 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| ||| | ||||| ||||| |||||||| |
|
|
| T |
17263285 |
caaaagtgctacatgagaggaacaagtgttgaacgtcctcctcgtgaccgcacccatccacacaa |
17263221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University