View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_25 (Length: 481)
Name: NF8890_low_25
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 17 - 465
Target Start/End: Complemental strand, 7426441 - 7425993
Alignment:
| Q |
17 |
agacttagttctaatgggatgcggattacctcgaatgggtctaacatgtggattcaagtatgcagaaatatgttgtctatgaaatcaattgaaatggtag |
116 |
Q |
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| T |
7426441 |
agacttagttctaatgggatgcggattaccttgaatgggtctaacatgtggattcaagtatgcagaaatatgttgtctatgaaatcaattgaaatggtag |
7426342 |
T |
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| Q |
117 |
gaattgtggtctatatagttagattttcatcacccttccgctcaagcaagcattatagtgcgtgtgtgtacgaccttctattgtagctgatataagaatt |
216 |
Q |
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| T |
7426341 |
gaattgtggtctatatagttagattttcatcacccttccgctcacgcaagcattatagtgcgtgtgtgtacgaccttctattgtagctgatataagaatt |
7426242 |
T |
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| Q |
217 |
tttaaaggtaacaaaactgaccaattagagagagcaccagtgttctgattgtttccaactttaggaaattcatgatttcaaatagttaagggcaatatta |
316 |
Q |
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| T |
7426241 |
tttaaaggtaacaaaactgaccaattagagagagcaccagtgttctgattgtttccaactttaggaaattcatgatttcaaatagttaagggcaatatta |
7426142 |
T |
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| Q |
317 |
cgtttctttaaaatgattatgcatcatttgttaattatatagacctctctgttatcaaatattatacttctatcaaatatagcttcgtgggtacaacaca |
416 |
Q |
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| T |
7426141 |
cgtttctttaaaatgattatgcatcatttgttaattatatagacctctctgttatcaaatattatacttctatcaaatatagcttcgtgggtacaacaca |
7426042 |
T |
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| Q |
417 |
agcaagaaaccagcaagaaaaaggagatcagttgctgtagcctttcctg |
465 |
Q |
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| T |
7426041 |
agcaagaaaccagcaagaaaaaggagatcagttgttgtagcctttcctg |
7425993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 12219218 - 12219337
Alignment:
| Q |
17 |
agacttagttctaatgggatgcggattacctcgaatgggtctaacatgtggattcaagtatgcagaaatatgttgtctatgaaatcaattgaaatggtag |
116 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12219218 |
agacttagttctaatgggatgcagattacctcgaatgggtctaacatgtggattcaagtatgcagaaatatgttgtctatgaaatcaattgaaatggaag |
12219317 |
T |
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| Q |
117 |
gaattgtggtctatatagtt |
136 |
Q |
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| T |
12219318 |
gtattgtggtctatatagtt |
12219337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 381 - 465
Target Start/End: Original strand, 12219464 - 12219548
Alignment:
| Q |
381 |
tacttctatcaaatatagcttcgtgggtacaacacaagcaagaaaccagcaagaaaaaggagatcagttgctgtagcctttcctg |
465 |
Q |
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| T |
12219464 |
tacttctatcaaatatagcatcgtggatacaacagaagcaagaaaccagcaagaaaaagaagatcagctgttgtagtgtttcctg |
12219548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 12219364 - 12219420
Alignment:
| Q |
129 |
atatagttagattttcatcacccttccgctcaagcaagcattatagtgcgtgtgtgt |
185 |
Q |
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| T |
12219364 |
atatagttagattttcatcacccttccgttcacgcaagcattatagtgcgtgtgtgt |
12219420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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