View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_28 (Length: 471)
Name: NF8890_low_28
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_28 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 52710721 - 52711191
Alignment:
| Q |
1 |
atactgcccaacttccatgcccatgaacgtttacaatgcgcggcgttagccttataatcaatcaattatattcaatattcatacgcagatatttacgaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52710721 |
atactgcccaacttccatgcccatgaacgtttacaatgcgcggcgttagccttataatcaatcaattatattcaatatttatacgcagatatttacgaac |
52710820 |
T |
|
| Q |
101 |
tctcatataatttccgtgtctctaacctaccttgacatatctataaccatgattaccggcaaggacatttacaatgttttagcggcgattgtgccactat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52710821 |
tctcatataatttccgtgtctctaacctaccttgacatatctataaccatgattaccggcaaggacatatacaatgttttagcggcgattgtgccactat |
52710920 |
T |
|
| Q |
201 |
atgtcgctatgatattagcatatggttcggtccgatggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtctcggtttttgcagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52710921 |
atgtcgctatgatattagcatatggttcggtccgatggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtctcggtttttgcagt |
52711020 |
T |
|
| Q |
301 |
tccattactatcattccattttatttcatccaatgatccttatgctatgaattaccatttcttaccagctgattcacttcaaaaagtagttatacttggt |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| |
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| T |
52711021 |
tccgttactatcattccattttatttcatccaatgatccttatgctatgaattaccatttcttagcagccgattcacttcaaaaagtagttatccttggt |
52711120 |
T |
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| Q |
401 |
gctctttttatatggaacacattcttaaaaaaccaagatagtcttgattggaccattacacttttctccat |
471 |
Q |
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| T |
52711121 |
gctctttttatatggaacacattctcaaaaaaccaagatagtcttgattggaccattacacttttctccat |
52711191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 121 - 469
Target Start/End: Original strand, 52716149 - 52716497
Alignment:
| Q |
121 |
tctaacctaccttgacatatctataaccatgattaccggcaaggacatttacaatgttttagcggcgattgtgccactatatgtcgctatgatattagca |
220 |
Q |
| |
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||||| |||||||||| |||||||||||||||||||||| ||||| || ||| ||||||| || || |||||||| |||||||| ||||||||||||||| |
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| T |
52716149 |
tctaatctaccttgacctatctataaccatgattaccggtaaggatatatacgatgttttcgcagcaattgtgccgctatatgttgctatgatattagca |
52716248 |
T |
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| Q |
221 |
tatggttcggtccgatggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtctcggtttttgcagttccattactatcattccatt |
320 |
Q |
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|| ||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| ||||||| |
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| T |
52716249 |
tacggttcagttcgttggtggaaaatcttcacaccagatcaatgttctggtataaaccgttttgtcgctgttttcgcagttccattactatctttccatt |
52716348 |
T |
|
| Q |
321 |
ttatttcatccaatgatccttatgctatgaattaccatttcttaccagctgattcacttcaaaaagtagttatacttggtgctctttttatatggaacac |
420 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52716349 |
ttatatcttccaatgatccttatgctatgaattaccatttcttagcagctgattcacttcaaaaagtagttatccttggtgctctttttatatggaacac |
52716448 |
T |
|
| Q |
421 |
attcttaaaaaaccaagatagtcttgattggaccattacacttttctcc |
469 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52716449 |
attctcaaaaaaccaagatagtcttgattggactattacacttttctcc |
52716497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 33101954 - 33102048
Alignment:
| Q |
209 |
atgatattagcatatggttcggtccgatggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtctcggtttttgcagttcc |
303 |
Q |
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||||| ||||| ||||| || || || ||||||||||| ||| |||| || |||||||| || ||||||||||| ||| || |||| |||||||| |
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| T |
33101954 |
atgatcttagcctatggctccgtacggtggtggaaaatattctcaccggaccaatgttccggcataaaccgtttcgtcgcgattttcgcagttcc |
33102048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 235 - 385
Target Start/End: Original strand, 34970772 - 34970922
Alignment:
| Q |
235 |
atggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtctcggtttttgcagttccattactatcattccattttatttcatccaat |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||| | |||||||||||||| | || |||||||| || || ||| |||| |
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| T |
34970772 |
atggtggaaaatcttcacaccagatcaatgttcaggcataaaccgttttgtagcactttttgcagttccacttctctcattccacttcatctcaaccaac |
34970871 |
T |
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| Q |
335 |
gatccttatgctatgaattaccatttcttaccagctgattcacttcaaaaa |
385 |
Q |
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||||||| ||||||| ||| ||| || |||||||||||||||||||| |
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| T |
34970872 |
aatccttacactatgaactacaggttcatagcagctgattcacttcaaaaa |
34970922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 198 - 294
Target Start/End: Complemental strand, 10839139 - 10839043
Alignment:
| Q |
198 |
tatatgtcgctatgatattagcatatggttcggtccgatggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtctcggtttt |
294 |
Q |
| |
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||||||| |||||||| ||||| || ||||||||||| |||||||| || ||| |||| ||||||||||| || ||||||||||||||| ||||||| |
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| T |
10839139 |
tatatgttgctatgatcttagcctacggttcggtccgttggtggaagattttctcaccggatcaatgttccggtataaaccgttttgtcgcggtttt |
10839043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 191 - 321
Target Start/End: Original strand, 25038561 - 25038691
Alignment:
| Q |
191 |
gtgccactatatgtcgctatgatattagcatatggttcggtccgatggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtctcgg |
290 |
Q |
| |
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|||||||| ||||| |||||||| ||||| ||||| || || |||||||||||| || |||| ||||||||||| ||||| ||||||||||| | |
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| T |
25038561 |
gtgccactttatgtagctatgatcttagcttatggatcagtaaaatggtggaaaatattttcacctgatcaatgttcaggaatcaaccgttttgttgcac |
25038660 |
T |
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| Q |
291 |
tttttgcagttccattactatcattccattt |
321 |
Q |
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| T |
25038661 |
tctttgcagttccacttctttcattccattt |
25038691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 16761432 - 16761382
Alignment:
| Q |
235 |
atggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgt |
285 |
Q |
| |
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||||||||||||||| ||||||||||||||| |||| |||||||||||||| |
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| T |
16761432 |
atggtggaaaatctttacaccagatcaatgtgctggtataaaccgttttgt |
16761382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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