View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8890_low_29 (Length: 464)

Name: NF8890_low_29
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8890_low_29
NF8890_low_29
[»] chr7 (3 HSPs)
chr7 (1-447)||(6635730-6636178)
chr7 (343-428)||(34670112-34670197)
chr7 (334-414)||(38233806-38233886)
[»] chr8 (1 HSPs)
chr8 (341-440)||(39193836-39193934)
[»] chr4 (3 HSPs)
chr4 (341-443)||(46177005-46177106)
chr4 (344-443)||(45022800-45022898)
chr4 (341-419)||(35959121-35959199)
[»] chr2 (3 HSPs)
chr2 (341-443)||(16625859-16625960)
chr2 (343-443)||(16519169-16519267)
chr2 (342-443)||(4003330-4003430)
[»] chr6 (1 HSPs)
chr6 (355-443)||(26713765-26713852)
[»] chr1 (5 HSPs)
chr1 (341-428)||(33324550-33324637)
chr1 (373-443)||(23871573-23871642)
chr1 (373-443)||(33991443-33991512)
chr1 (341-406)||(42333584-42333648)
chr1 (343-428)||(50586964-50587048)
[»] chr3 (2 HSPs)
chr3 (341-443)||(29623138-29623240)
chr3 (373-445)||(49860736-49860807)
[»] chr5 (1 HSPs)
chr5 (358-443)||(4649083-4649166)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 6636178 - 6635730
Alignment:
Q  1 taattcaaattgcaaagcatgaataaaccagacatgatgggaaatcactcttcacttcactattgcattccatatgcatgctagctagctagctagtgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6636178 taattcaaattgcaaagcatgaataaaccagacatgatgggaaatcactcttcacttcactattgcattccatatgcatgctagctagctagctagtgtt 6636079  T
Q  101 acttgagagacatgtcaaacaaaaccaaacttcattgttactctta-gggtttatttctgagtttggaggggaggggagcgaggagttttgaggtgagaa 199  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6636078 acttgagagacatgtcaatcaaaaccaaacttcattgttactcttaggggtttatttctgagtttggaggggaggggagcgaggagttttgaggtgagaa 6635979  T
Q  200 atatagaagaaaattgagaaannnnnnnnnnnnnnnngaaagagtgttttgaggaaaattagagtgtttatcaattttcctcaaaacccctcatctcaan 299  Q
    ||||||| |||||||||||||                |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||     
T  6635978 atatagaggaaaattgagaaattttgtacatttttttgaaagagtgttttgaggaaaattaaaatgtttatcaattttcctcaaaaccccttatctcaat 6635879  T
Q  300 nnnnnnnnnnnnnnnccttaaaattagagtgttttgagaacggttttgtattataaagaaaaattaaccctttaaagccctctcttctcattgtactcta 399  Q
                   ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||| ||||||||||||||||    
T  6635878 tttttacattttttcccttaaaattagagtgttttgagaacggttttgtattatgaagaaaaattaacccttcgaagccctctgttctcattgtactcta 6635779  T
Q  400 tttcttctaattgctacttca-ttttttcctaaaaccctcccctcattt 447  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  6635778 tttcttccaattgctccttcatttttttcctaaaaccctcccctcattt 6635730  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 428
Target Start/End: Complemental strand, 34670197 - 34670112
Alignment:
Q  343 ttttgtattataaagaaaaattaaccctttaaagccctctcttctcattgtactctatttcttctaattgctacttcattttttcc 428  Q
    ||||||||||| ||||||| ||||||||| |||| | | || ||||||| | |||||||||||||| |||||  ||| ||||||||    
T  34670197 ttttgtattatgaagaaaagttaacccttcaaagtcgtttcctctcattttcctctatttcttctacttgctcgttccttttttcc 34670112  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 38233806 - 38233886
Alignment:
Q  334 tgagaacggttttgtattataaagaaaaattaaccctttaaagccctctcttctcattgtactctatttcttctaattgct 414  Q
    |||||| ||||||||| ||| |||||||||||||| |  ||||||||||| |  || |||||||||||| ||||| |||||    
T  38233806 tgagaagggttttgtaatatcaagaaaaattaaccttccaaagccctctcattccaatgtactctattttttctacttgct 38233886  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 341 - 440
Target Start/End: Complemental strand, 39193934 - 39193836
Alignment:
Q  341 ggttttgtattataaagaaaaattaaccctttaaagccctctcttctcattgtactctatttcttctaattgctacttcattttttcctaaaaccctccc 440  Q
    |||||| |||||| |||||||||||||||   ||||||||| | || || |||||||||||||||| | |||||||||| |||||||| |||||||||||    
T  39193934 ggttttatattatgaagaaaaattaaccccccaaagccctcccctcccaatgtactctatttcttccacttgctacttccttttttcc-aaaaccctccc 39193836  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 443
Target Start/End: Original strand, 46177005 - 46177106
Alignment:
Q  341 ggttttgtattataaagaaaaattaaccctttaaagccctctcttctcattgtactctatttcttctaattgctacttcattttttcctaaaaccctccc 440  Q
    ||||||||||||| |||||||||||||||   ||| ||||| | || || |||||||||||||||| | ||| | |||| |||||||| |||||||||||    
T  46177005 ggttttgtattattaagaaaaattaaccccccaaaaccctcccctcccaatgtactctatttcttccacttgttccttctttttttcc-aaaaccctccc 46177103  T
Q  441 ctc 443  Q
    |||    
T  46177104 ctc 46177106  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 443
Target Start/End: Original strand, 45022800 - 45022898
Alignment:
Q  344 tttgtattataaagaaaaattaaccctttaaagccctctcttctcattgtactctatttcttctaattgctacttcattttttcctaaaaccctcccctc 443  Q
    |||||||||||||||||||| |||||  |||||||||| | |||||  || | |||||| ||| | ||||| |||| |||||||| ||||||||||||||    
T  45022800 tttgtattataaagaaaaatgaacccactaaagccctcccctctcaaagtcccctattttttccacttgctccttctttttttcc-aaaaccctcccctc 45022898  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 419
Target Start/End: Complemental strand, 35959199 - 35959121
Alignment:
Q  341 ggttttgtattataaagaaaaattaaccctttaaagccctctcttctcattgtactctatttcttctaattgctacttc 419  Q
    ||||||||||||| |||||||||||| ||   ||||||||| | || || |||||||||||||||| | ||||| ||||    
T  35959199 ggttttgtattatgaagaaaaattaaacccccaaagccctcccctcacaatgtactctatttcttccacttgctccttc 35959121  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 443
Target Start/End: Original strand, 16625859 - 16625960
Alignment:
Q  341 ggttttgtattataaagaaaaattaaccctttaaagccctctcttctcattgtactctatttcttctaattgctacttcattttttcctaaaaccctccc 440  Q
    |||||||||| || |||||||||||||||   ||||||||| | || || |||||||||||||||| | ||||| | || |||||||| |||||||||||    
T  16625859 ggttttgtatcatgaagaaaaattaaccccccaaagccctcccctcccaatgtactctatttcttccacttgctccatccttttttcc-aaaaccctccc 16625957  T
Q  441 ctc 443  Q
    |||    
T  16625958 ctc 16625960  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 443
Target Start/End: Original strand, 16519169 - 16519267
Alignment:
Q  343 ttttgtattataaagaaaaattaaccctttaaagccctctcttctcattgtactctatttcttctaattgctacttcattttttcctaaaaccctcccct 442  Q
    ||||||||||| ||||||||| |||||   ||||||||| | || || |||||||||||||||| | ||||| |||| |||||||| |||||||||||||    
T  16519169 ttttgtattatgaagaaaaatcaacccaccaaagccctcccctc-caatgtactctatttcttccacttgctccttccttttttcc-aaaaccctcccct 16519266  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 443
Target Start/End: Complemental strand, 4003430 - 4003330
Alignment:
Q  342 gttttgtattataaagaaaaattaaccctttaaagccctctcttctcattgtactctatttcttctaattgctacttcattttttcctaaaaccctcccc 441  Q
    |||||||||||| |||||||||||||||   ||||||||| | || |||| | |||||||||||| | |||||  ||| |||||||| ||| ||||||||    
T  4003430 gttttgtattatgaagaaaaattaaccccccaaagccctcccctcccattttcctctatttcttccacttgctcattccttttttcc-aaagccctcccc 4003332  T
Q  442 tc 443  Q
    ||    
T  4003331 tc 4003330  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 443
Target Start/End: Complemental strand, 26713852 - 26713765
Alignment:
Q  355 aagaaaaattaaccctttaaagccctctcttctcattgtactctatttcttctaattgctacttcattttttcctaaaaccctcccctc 443  Q
    ||||||||||||||| | ||||||||| | || || |||||||||||||||| | ||||| |||| ||| |||| ||||||||||||||    
T  26713852 aagaaaaattaacccctcaaagccctcccctcccaatgtactctatttcttccacttgctccttcctttattcc-aaaaccctcccctc 26713765  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 428
Target Start/End: Complemental strand, 33324637 - 33324550
Alignment:
Q  341 ggttttgtattataaagaaaaattaaccctttaaagccctctcttctcattgtactctatttcttctaattgctacttcattttttcc 428  Q
    ||||| ||||||| ||||||| |||||||   |||||||||||||| |||| | |||||||||||||| |||||  ||| ||||||||    
T  33324637 ggtttagtattatgaagaaaagttaaccccccaaagccctctcttcccattttcctctatttcttctacttgctcattccttttttcc 33324550  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 443
Target Start/End: Original strand, 23871573 - 23871642
Alignment:
Q  373 aaagccctctcttctcattgtactctatttcttctaattgctacttcattttttcctaaaaccctcccctc 443  Q
    ||||||||||| ||||| |||  ||||||||||| | ||||| |||| |||||||| ||||||||||||||    
T  23871573 aaagccctctcctctcaatgtcttctatttcttccacttgctccttccttttttcc-aaaaccctcccctc 23871642  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 33991512 - 33991443
Alignment:
Q  373 aaagccctctcttctcattgtactctatttcttctaattgctacttcattttttcctaaaaccctcccctc 443  Q
    ||||||||||| || || |||  ||||||||||| | ||||| ||||||||||||| ||||||||||||||    
T  33991512 aaagccctctcctcccaatgtcttctatttcttccacttgctccttcattttttcc-aaaaccctcccctc 33991443  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 406
Target Start/End: Complemental strand, 42333648 - 42333584
Alignment:
Q  341 ggttttgtattataaagaaaaattaaccctttaaagccctctcttctcattgtactctatttcttc 406  Q
    ||||||||||||| ||||||||||||| |  |||| ||||||||| ||| |||||| |||||||||    
T  42333648 ggttttgtattatgaagaaaaattaacgc-ctaaacccctctcttttcaatgtactttatttcttc 42333584  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 428
Target Start/End: Complemental strand, 50587048 - 50586964
Alignment:
Q  343 ttttgtattataaagaaaaattaaccctttaaagccctctcttctcattgtactctatttcttctaattgctacttcattttttcc 428  Q
    ||||||||||| ||||||||| |||||   ||||||||| || |||| ||| |||||||||||| | ||||| |||| ||||||||    
T  50587048 ttttgtattatgaagaaaaatgaaccccccaaagccctccct-ctcaatgtcctctatttcttccacttgctccttccttttttcc 50586964  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 443
Target Start/End: Complemental strand, 29623240 - 29623138
Alignment:
Q  341 ggttttgtattataaagaaaaattaaccctttaaagccctctcttctcattgtactctatttcttctaattgctacttcattttttcct-aaaaccctcc 439  Q
    ||||||||||||| |||||||||||| || | ||||||||| | ||  | ||| |||||||||||| | ||||| |||| |||||| || ||||||||||    
T  29623240 ggttttgtattatgaagaaaaattaa-ccatcaaagccctcccctcctaatgtcctctatttcttccacttgctccttcctttttttctcaaaaccctcc 29623142  T
Q  440 cctc 443  Q
    ||||    
T  29623141 cctc 29623138  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 445
Target Start/End: Complemental strand, 49860807 - 49860736
Alignment:
Q  373 aaagccctctcttctcattgtactctatttcttctaattgctacttcattttttcctaaaaccctcccctcat 445  Q
    ||||||||||| || || |||  ||||||||||| ||||||| |||| |||||||| |||||||| |||||||    
T  49860807 aaagccctctcctcccaatgtcttctatttcttccaattgctccttccttttttcc-aaaacccttccctcat 49860736  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 443
Target Start/End: Original strand, 4649083 - 4649166
Alignment:
Q  358 aaaaattaaccctttaaagccctctcttctcattgtactctatttcttctaattgctacttcattttttcctaaaaccctcccctc 443  Q
    ||||||||||| || ||||||||||| ||||| |||  ||||||||||| | |||||  ||| |||||||| ||||||||||||||    
T  4649083 aaaaattaacc-ttcaaagccctctcctctcaatgtcttctatttcttccacttgctcattctttttttcc-aaaaccctcccctc 4649166  T

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