View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8890_low_3 (Length: 921)
Name: NF8890_low_3
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_3 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] scaffold0154 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0002 (Bit Score: 921; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 921; E-Value: 0
Query Start/End: Original strand, 1 - 921
Target Start/End: Original strand, 183327 - 184247
Alignment:
| Q |
1 |
gtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183327 |
gtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttctta |
183426 |
T |
|
| Q |
101 |
ccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183427 |
ccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacag |
183526 |
T |
|
| Q |
201 |
gaatattcacctgttgtccatcgactacgcctttcggcctgatcttaggccctgactcaccctccgtggacgaaccttgcggaggaacccttaggttttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183527 |
gaatattcacctgttgtccatcgactacgcctttcggcctgatcttaggccctgactcaccctccgtggacgaaccttgcggaggaacccttaggttttc |
183626 |
T |
|
| Q |
301 |
ggggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcgga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183627 |
ggggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcgga |
183726 |
T |
|
| Q |
401 |
acgctcccctaccgattcatttttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183727 |
acgctcccctaccgattcatttttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacg |
183826 |
T |
|
| Q |
501 |
cactctttcaagggtggctgcttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgagcgatcatttaggggccttagctggtg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183827 |
cactctttcaagggtggctgcttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgagcgatcatttaggggccttagctggtg |
183926 |
T |
|
| Q |
601 |
atctgggctgtttccctctcgacgatgaagcttatcccccatcgtctcactggccgacttgacccgccagggatatctagtattcagagtttgcctcgat |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183927 |
atctgggctgtttccctctcgacgatgaagcttatcccccatcgtctcactggccgacttgacccgccagggatatctagtattcagagtttgcctcgat |
184026 |
T |
|
| Q |
701 |
ttggtaccgctctcgcggcccgcgccgaaacagtgctttacccctagatgtccagtcaactgctgcgcctcaacgcatttcggggagaaccagctagctc |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
184027 |
ttggtaccgctctcgcggcccgcgccgaaacagtgctttacccctagatgtccagtcaactgctgcgcctcaacgcatttcggggagaaccagctagctc |
184126 |
T |
|
| Q |
801 |
tgggttcgagtggcatttcaccgctaaccacaactcatccgctgatttttcaacatcagtcggttcggacctccacttagtttcacctaagcttcatcct |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
184127 |
tgggttcgagtggcatttcaccgctaaccacaactcatccgctgatttttcaacatcagtcggttcggacctccacttagtttcacctaagcttcatcct |
184226 |
T |
|
| Q |
901 |
ggtcatggatagatcacccag |
921 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
184227 |
ggtcatggatagatcacccag |
184247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 921; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 921; E-Value: 0
Query Start/End: Original strand, 1 - 921
Target Start/End: Complemental strand, 494189 - 493269
Alignment:
| Q |
1 |
gtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494189 |
gtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttctta |
494090 |
T |
|
| Q |
101 |
ccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494089 |
ccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacag |
493990 |
T |
|
| Q |
201 |
gaatattcacctgttgtccatcgactacgcctttcggcctgatcttaggccctgactcaccctccgtggacgaaccttgcggaggaacccttaggttttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
493989 |
gaatattcacctgttgtccatcgactacgcctttcggcctgatcttaggccctgactcaccctccgtggacgaaccttgcggaggaacccttaggttttc |
493890 |
T |
|
| Q |
301 |
ggggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcgga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
493889 |
ggggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcgga |
493790 |
T |
|
| Q |
401 |
acgctcccctaccgattcatttttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
493789 |
acgctcccctaccgattcatttttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacg |
493690 |
T |
|
| Q |
501 |
cactctttcaagggtggctgcttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgagcgatcatttaggggccttagctggtg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
493689 |
cactctttcaagggtggctgcttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgagcgatcatttaggggccttagctggtg |
493590 |
T |
|
| Q |
601 |
atctgggctgtttccctctcgacgatgaagcttatcccccatcgtctcactggccgacttgacccgccagggatatctagtattcagagtttgcctcgat |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
493589 |
atctgggctgtttccctctcgacgatgaagcttatcccccatcgtctcactggccgacttgacccgccagggatatctagtattcagagtttgcctcgat |
493490 |
T |
|
| Q |
701 |
ttggtaccgctctcgcggcccgcgccgaaacagtgctttacccctagatgtccagtcaactgctgcgcctcaacgcatttcggggagaaccagctagctc |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
493489 |
ttggtaccgctctcgcggcccgcgccgaaacagtgctttacccctagatgtccagtcaactgctgcgcctcaacgcatttcggggagaaccagctagctc |
493390 |
T |
|
| Q |
801 |
tgggttcgagtggcatttcaccgctaaccacaactcatccgctgatttttcaacatcagtcggttcggacctccacttagtttcacctaagcttcatcct |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
493389 |
tgggttcgagtggcatttcaccgctaaccacaactcatccgctgatttttcaacatcagtcggttcggacctccacttagtttcacctaagcttcatcct |
493290 |
T |
|
| Q |
901 |
ggtcatggatagatcacccag |
921 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
493289 |
ggtcatggatagatcacccag |
493269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 914; E-Value: 0
Query Start/End: Original strand, 1 - 921
Target Start/End: Complemental strand, 18191851 - 18190930
Alignment:
| Q |
1 |
gtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctctacccc-ttctt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18191851 |
gtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctctacccccttctt |
18191752 |
T |
|
| Q |
100 |
accctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtaca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191751 |
accctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtaca |
18191652 |
T |
|
| Q |
200 |
ggaatattcacctgttgtccatcgactacgcctttcggcctgatcttaggccctgactcaccctccgtggacgaaccttgcggaggaacccttaggtttt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191651 |
ggaatattcacctgttgtccatcgactacgcctttcggcctgatcttaggccctgactcaccctccgtggacgaaccttgcggaggaacccttaggtttt |
18191552 |
T |
|
| Q |
300 |
cggggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcgg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191551 |
cggggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcgg |
18191452 |
T |
|
| Q |
400 |
aacgctcccctaccgattcatttttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattac |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191451 |
aacgctcccctaccgattcatttttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattac |
18191352 |
T |
|
| Q |
500 |
gcactctttcaagggtggctgcttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgagcgatcatttaggggccttagctggt |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191351 |
gcactctttcaagggtggctgcttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgagcgatcatttaggggccttagctggt |
18191252 |
T |
|
| Q |
600 |
gatctgggctgtttccctctcgacgatgaagcttatcccccatcgtctcactggccgacttgacccgccagggatatctagtattcagagtttgcctcga |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191251 |
gatctgggctgtttccctctcgacgatgaagcttatcccccatcgtctcactggccgacttgacccgccagggatatctagtattcagagtttgcctcga |
18191152 |
T |
|
| Q |
700 |
tttggtaccgctctcgcggcccgcgccgaaacagtgctttacccctagatgtccagtcaactgctgcgcctcaacgcatttcggggagaaccagctagct |
799 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191151 |
tttggtaccgctctcgcggcccgcgccgaaacagtgctttacccctagatgtccagtcaactgctgcgcctcaacgcatttcggggagaaccagctagct |
18191052 |
T |
|
| Q |
800 |
ctgggttcgagtggcatttcaccgctaaccacaactcatccgctgatttttcaacatcagtcggttcggacctccacttagtttcacctaagcttcatcc |
899 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191051 |
ctgggttcgagtggcatttcaccgctaaccacaactcatccgctgatttttcaacatcagtcggttcggacctccacttagtttcacctaagcttcatcc |
18190952 |
T |
|
| Q |
900 |
tggtcatggatagatcacccag |
921 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
18190951 |
tggtcatggatagatcacccag |
18190930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 739 - 892
Target Start/End: Original strand, 50182894 - 50183047
Alignment:
| Q |
739 |
tacccctagatgtccagtcaactgctgcgcctcaacgcatttcggggagaaccagctagctctgggttcgagtggcatttcaccgctaaccacaactcat |
838 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
50182894 |
tacccctagatgtccagtcaactgatgcgcctcaacgcatttcggggagaaccagctagctctgggtttgagtggcatttcaccgctatccacaactcat |
50182993 |
T |
|
| Q |
839 |
ccgctgatttttcaacatcagtcggttcggacctccacttagtttcacctaagc |
892 |
Q |
| |
|
||| |||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50182994 |
ccgttgatttttcaacttcagtcggtttggacctccacttagtttcacctaagc |
50183047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 577; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 1 - 613
Target Start/End: Complemental strand, 34659188 - 34658576
Alignment:
| Q |
1 |
gtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34659188 |
gtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgtactcgaatcttggctggaggcattttctctaccccttctta |
34659089 |
T |
|
| Q |
101 |
ccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34659088 |
ccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacag |
34658989 |
T |
|
| Q |
201 |
gaatattcacctgttgtccatcgactacgcctttcggcctgatcttaggccctgactcaccctccgtggacgaaccttgcggaggaacccttaggttttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34658988 |
gaatattcacctgttgtccatcgactacgccattcggcctgatcttaggccctgactcaccctctgtggacgaaccttgcggaggaacccttaggttttc |
34658889 |
T |
|
| Q |
301 |
ggggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcgga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34658888 |
ggggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaacctgctcgcgcgggtacttcgttctaaggcgga |
34658789 |
T |
|
| Q |
401 |
acgctcccctaccgattcatttttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacg |
500 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
34658788 |
actctcccctaccgattcatttttagatcccacagctttggcagatcgcttagccccgttcatcttcggcgcgagagcgctcgatcagtgagctattatg |
34658689 |
T |
|
| Q |
501 |
cactctttcaagggtggctgcttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgagcgatcatttaggggccttagctggtg |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34658688 |
cactctttcaagggtggctgcttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgaacgatcatttaggggccttagctggtg |
34658589 |
T |
|
| Q |
601 |
atctgggctgttt |
613 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34658588 |
atctgggctgttt |
34658576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 615 - 921
Target Start/End: Complemental strand, 34656843 - 34656537
Alignment:
| Q |
615 |
cctctcgacgatgaagcttatcccccatcgtctcactggccgacttgacccgccagggatatctagtattcagagtttgcctcgatttggtaccgctctc |
714 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34656843 |
cctctcgacgatgaagcttatcccacatcgtctcactggccgacttgacctgccagggatatctagtattcagagtttgcctcgatttggtacggctctc |
34656744 |
T |
|
| Q |
715 |
gcggcccgcgccgaaacagtgctttacccctagatgtccagtcaactgctgcgcctcaacgcatttcggggagaaccagctagctctgggttcgagtggc |
814 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
34656743 |
gcggcccgcgctgaaacagtgctttacccctagatgtccagtcaactgctgtgcctcaacgcattttgaggagaaccagctagctctgggttcgagtggc |
34656644 |
T |
|
| Q |
815 |
atttcaccgctaaccacaactcatccgctgatttttcaacatcagtcggttcggacctccacttagtttcacctaagcttcatcctggtcatggatagat |
914 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34656643 |
atttcaccgctaatcacaattcatccgctgatttttcaacatcagtcggttcggacctccacttagtttcgcctaagcttcatcctggtcatggatagat |
34656544 |
T |
|
| Q |
915 |
cacccag |
921 |
Q |
| |
|
||||||| |
|
|
| T |
34656543 |
cacccag |
34656537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 8174997 - 8174936
Alignment:
| Q |
80 |
cattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataa |
142 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
8174997 |
cattttctctatcccttcttaccctacaaaaacaaggg-caccttgtgtgcttgaaccgataa |
8174936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 651 - 875
Target Start/End: Complemental strand, 16006459 - 16006235
Alignment:
| Q |
651 |
tggccgacttgacccgccagggatatctagtattcagagtttgcctcgatttggtaccgctctcgcggcccgcgccgaaacagtgctttacccctagatg |
750 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
16006459 |
tggccgacttgacccgccagggatatctaatattcagagtttgcctcgatttggaaccgctcccgcggcccgtgccgaaacaatgctttacccctaaatg |
16006360 |
T |
|
| Q |
751 |
tccagtcaactgctgcgcctcaacgcatttcggggagaaccagctagctctgggttcgagtggcatttcaccgctaaccacaactcatccgctgattttt |
850 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16006359 |
tccagtcaactgctgcgcctcaacgcatttcagggagaaccagctagctctgggttcgagtggcatttcaccgctaaccacaactcatccgctgattttt |
16006260 |
T |
|
| Q |
851 |
caacatcagtcggttcggacctcca |
875 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
16006259 |
caacatcagtcggttcggacctcca |
16006235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 2e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 14404718 - 14404532
Alignment:
| Q |
1 |
gtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14404718 |
gtcgttcgagcttttcttgggagtatggcatcaattacttcagcgccggagcgcctcgtactcgaaccttggctggagccattttctctaccccttctta |
14404619 |
T |
|
| Q |
101 |
ccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacctagcctcctccgtccctcgggaccaaca |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404618 |
ccctgaaaaaacagggggcaccttgtgttcttgaaccgataaccatctttcggctaacctagcctcctccgtccctcgggaccaaca |
14404532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 45610202 - 45610261
Alignment:
| Q |
180 |
gaccaacaagaggtagtacaggaatattcacctgttgtccatcgactacgcctttcggcc |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45610202 |
gaccaacaagaggtagtacaggaatattcacctgttgtgaatcgactacgcctttcggcc |
45610261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 863 - 921
Target Start/End: Complemental strand, 25933111 - 25933050
Alignment:
| Q |
863 |
gttcggacctccacttagtttcacctaagct---tcatcctggtcatggatagatcacccag |
921 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
25933111 |
gttcgaacctccacttagtttcacctaagctaaatcctcctggtcatggatagatcacccag |
25933050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 530 - 661
Target Start/End: Original strand, 21497 - 21628
Alignment:
| Q |
530 |
aaacctcctggctgtctctgcactcctacctcctt----tatcactgagcgatcatttaggggccttagctggtgatctgggctgtttccctctcgacga |
625 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| ||| ||||||| |||||||||||| | |||| ||||||||||| | ||||||||||||||| |
|
|
| T |
21497 |
aaacctcttggatgtctctgcactcctacctacttactttatcactaagcgatcatttaag----ttagttggtgatctggacaatttccctctcgacga |
21592 |
T |
|
| Q |
626 |
tgaagcttatcccccatcgtctcactggccgacttg |
661 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21593 |
tgaatcttatcccccatcgtctcactggccgacttg |
21628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 839 - 878
Target Start/End: Complemental strand, 27064750 - 27064711
Alignment:
| Q |
839 |
ccgctgatttttcaacatcagtcggttcggacctccactt |
878 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27064750 |
ccgctgatttttcaacataagtcggttcggacctccactt |
27064711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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