View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8890_low_31 (Length: 454)
Name: NF8890_low_31
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 16994668 - 16994848
Alignment:
| Q |
23 |
ctatcttttttaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagctaataagct |
122 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16994668 |
ctatcttttctaatggactttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacataaagctaataagct |
16994767 |
T |
|
| Q |
123 |
agatctgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatataatacaaatattgggttcaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16994768 |
agatctgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatatattacaaatattgggttcaa |
16994848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 17017903 - 17018083
Alignment:
| Q |
23 |
ctatcttttttaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagctaataagct |
122 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17017903 |
ctatcttttctaatggactttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacataaagctaataagct |
17018002 |
T |
|
| Q |
123 |
agatctgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatataatacaaatattgggttcaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17018003 |
agatctgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatatattacaaatattgggttcaa |
17018083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 17036732 - 17036909
Alignment:
| Q |
22 |
actatcttttttaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagctaataagc |
121 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17036732 |
actatcttttctaatggatattagaccaaatacata----ttctcatgcatgaagcgttcaaaggaactctaagaaacaatcaacaaaaagctaataagc |
17036827 |
T |
|
| Q |
122 |
tagatctgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatataatacaaatattgggttcaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17036828 |
tagatctgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatatagtacaaatattgggttcaa |
17036909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 17048416 - 17048600
Alignment:
| Q |
15 |
agaaaggactatcttttttaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagct |
114 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17048416 |
agaaaagactatcttttctaatggatattagaccaaatag----atattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagct |
17048511 |
T |
|
| Q |
115 |
aataagctagatctgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatataatacaaatattgggttcaa |
203 |
Q |
| |
|
|||||||| | | || ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17048512 |
aataagctggttttgatagactagttttctgcgttggctaaatgatgcatagtataatgttctatatatagtacaaatattgggttcaa |
17048600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 17042563 - 17042734
Alignment:
| Q |
28 |
ttttttaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagctaataagctagatc |
127 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17042563 |
ttttctaatggattttagaccaaatag----atattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagctaataagctggatc |
17042658 |
T |
|
| Q |
128 |
tgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatataatacaaatattgggttcaa |
203 |
Q |
| |
|
|| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17042659 |
tgatagacttgttttatgcgttggctaaataatgcatagtataatgttctatatatagtacaaatattgggttcaa |
17042734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 17002688 - 17002829
Alignment:
| Q |
22 |
actatcttttttaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagctaataagc |
121 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
17002688 |
actatcttttctaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacataaagctaatcagc |
17002787 |
T |
|
| Q |
122 |
tagatctgttagactagtttgctgcgttggctaaataatgca |
163 |
Q |
| |
|
||||||| | ||||| ||||||| ||| |||||||||||| |
|
|
| T |
17002788 |
tagatctacttcactagcttgctgccttgactaaataatgca |
17002829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 17031987 - 17031883
Alignment:
| Q |
194 |
ttgggttcaaccaacacctatccatcatcaaataccaacaaactccacaatcaagtgctcaaagactttaggacaagttgtgtgttcaattacagaatat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17031987 |
ttgggttcaaccaacacctatccatcatcaaataccaacaaactccacaatcaagtgctcaaagactttaggacaagttgtatgttcaattacagaatat |
17031888 |
T |
|
| Q |
294 |
gtaag |
298 |
Q |
| |
|
||||| |
|
|
| T |
17031887 |
gtaag |
17031883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 17025084 - 17025256
Alignment:
| Q |
22 |
actatcttttttaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagctaataagc |
121 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
17025084 |
actatcttttctaatggattttaaaccaaagagatat---ttctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagcttatcagc |
17025180 |
T |
|
| Q |
122 |
tagatctg--ttagactagtttgctgcgttggctaaataatgcata-gtataatgttctatatataatacaaatat |
194 |
Q |
| |
|
|||||||| | | |||| ||||||| |||| || || ||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
17025181 |
tagatctgattcatgctagcttgctgccttggttatattatgcataggtataatgttctatatatagtacaaatat |
17025256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 17002657 - 17002553
Alignment:
| Q |
194 |
ttgggttcaaccaacacctatccatcatcaaataccaacaaactccacaatcaagtgctcaaagactttaggacaagttgtgtgttcaattacagaatat |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| ||||| |
|
|
| T |
17002657 |
ttgggttcaaccaacacctatccatcatcaaataccaacaaactccacaatcaagtgctcaaagtgtttaggacaagctgcgtgttcaattaccaaatat |
17002558 |
T |
|
| Q |
294 |
gtaag |
298 |
Q |
| |
|
||||| |
|
|
| T |
17002557 |
gtaag |
17002553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 363 - 441
Target Start/End: Complemental strand, 17031818 - 17031740
Alignment:
| Q |
363 |
gataaaggttcacctttgaaccattttttaagagtccatatcagacacacctctaataaattctgtgtttttgtgatgt |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17031818 |
gataaaggttcacctttgaaccattttttaagagtccatatcagacacacctctaataaattctgtgtttttgtgatgt |
17031740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 17032029 - 17032108
Alignment:
| Q |
33 |
taatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaag |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17032029 |
taatggattttaaaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaag |
17032108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 17025052 - 17025014
Alignment:
| Q |
194 |
ttgggttcaaccaacacctatccatcatcaaataccaac |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17025052 |
ttgggttcaaccaacacctatccatcatcaaataccaac |
17025014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 17042527 - 17042434
Alignment:
| Q |
194 |
ttgggttcaaccaacacctatccatcatcaaataccaacaaactccacaatcaagtgctcaaagactttaggacaagttgtgtgttcaattaca |
287 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| || ||||| ||| | | ||| ||| |||| | |||||||||||||||||| ||||||||| |
|
|
| T |
17042527 |
ttgggttcaaccaacacttataaatcatcaaacactaacaagctctaaattcacgtgatcaatgtgtttaggacaagttgtgtgctcaattaca |
17042434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 17017213 - 17017255
Alignment:
| Q |
80 |
tcaaaggaactctaagagacaatcaacaaaaagctaataagct |
122 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
17017213 |
tcaaaggaactctaagagacaatgaataaaaagctaatcagct |
17017255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 17048391 - 17048351
Alignment:
| Q |
194 |
ttgggttcaaccaacacctatccatcatcaaataccaacaa |
234 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || ||||| |
|
|
| T |
17048391 |
ttgggttcaaccagcacctatccatcatcaaacactaacaa |
17048351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University