View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8890_low_35 (Length: 422)

Name: NF8890_low_35
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8890_low_35
NF8890_low_35
[»] chr4 (11 HSPs)
chr4 (1-410)||(9593431-9593841)
chr4 (1-403)||(9581656-9582048)
chr4 (1-403)||(9587351-9587743)
chr4 (1-404)||(9602233-9602650)
chr4 (1-270)||(9569204-9569473)
chr4 (255-410)||(9569616-9569769)
chr4 (332-412)||(9606110-9606190)
chr4 (1-141)||(54295006-54295146)
chr4 (1-58)||(37897957-37898014)
chr4 (80-132)||(9571882-9571934)
chr4 (211-278)||(54291085-54291150)
[»] chr6 (15 HSPs)
chr6 (1-325)||(29131320-29131643)
chr6 (1-193)||(29012844-29013036)
chr6 (8-318)||(32740480-32740773)
chr6 (40-184)||(29152012-29152156)
chr6 (8-184)||(32960616-32960792)
chr6 (1-184)||(29124160-29124343)
chr6 (40-141)||(34281969-34282070)
chr6 (1-184)||(32744743-32744926)
chr6 (1-93)||(29300090-29300182)
chr6 (1-344)||(29145308-29145651)
chr6 (43-141)||(34278373-34278471)
chr6 (106-159)||(19697377-19697430)
chr6 (112-188)||(34258133-34258209)
chr6 (80-124)||(286324-286368)
chr6 (8-184)||(29137301-29137477)
[»] chr7 (2 HSPs)
chr7 (1-342)||(42446349-42446690)
chr7 (40-184)||(7793871-7794015)
[»] scaffold0054 (2 HSPs)
scaffold0054 (1-284)||(39601-39884)
scaffold0054 (5-284)||(33250-33529)
[»] scaffold0134 (1 HSPs)
scaffold0134 (1-255)||(16037-16291)
[»] chr5 (4 HSPs)
chr5 (2-66)||(42413999-42414063)
chr5 (1-66)||(39724570-39724635)
chr5 (1-62)||(15807722-15807783)
chr5 (223-256)||(43323021-43323054)
[»] scaffold0129 (1 HSPs)
scaffold0129 (1-60)||(10487-10546)
[»] scaffold0613 (1 HSPs)
scaffold0613 (1-123)||(209-331)
[»] chr3 (1 HSPs)
chr3 (1-64)||(5162456-5162519)
[»] chr1 (1 HSPs)
chr1 (1-66)||(368807-368872)
[»] chr2 (1 HSPs)
chr2 (1-125)||(7488694-7488818)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 9593841 - 9593431
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||||||||  |||||||||| |||  |||||||| | |||||||||| |||||||| |    
T  9593841 tttcagatatcaattttgggtgaatacggtataaaggaatcgtggaccaatttcttcattgtcggaccgttgtctttcattgagcgtcccatcggagtgg 9593742  T
Q  101 gtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaa 200  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| |||| |||||||    
T  9593741 gtacgaaaggagaaatattcttcatcagagaagataaagaactagtttgtcttgatttaaatactcaaacgattgtgaagcttgcttgcaaaaaagtgaa 9593642  T
Q  201 ctgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattg 300  Q
     | |||||| |||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |    
T  9593641 ttctattgatcggatattaatatacaaggaaaacattcttccaattggaggaataagtaattagttattttccttgttttcaccaggagcaaaatgatcg 9593542  T
Q  301 tggccattgggatattacattgtatgcgaagtgtcttgtcaattagaa-tctcggagattgattgaatctgtagcgggccattatccttgtatcgttgct 399  Q
    |||  ||||| ||||||| |||||||| |||||||||||||||| ||| || | ||||||| ||||||| |||||||| |||||||||||||| ||||||    
T  9593541 tggtgattggaatattaccttgtatgcaaagtgtcttgtcaattggaattccctgagattgcttgaatcggtagcgggtcattatccttgtattgttgct 9593442  T
Q  400 gatgctgatgt 410  Q
     ||||| ||||    
T  9593441 catgcttatgt 9593431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 9582048 - 9581656
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||  |||||||||| ||||||||||||| ||||| |    
T  9582048 tttcacatatcaattttgggtgaatacggtataaaggagtcatggaccaaactcttcatggttggaccgttgtcttgcattgagcgtcctattggagtgg 9581949  T
Q  101 gtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaa 200  Q
    | | |||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9581948 gaacgaaaggagaaatattcgtcatcagacaagataaagaactagtttgtcttgatttaagtactcaaatgattgtggagcttgcttacaaagaagtgaa 9581849  T
Q  201 ctgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattg 300  Q
     | |||||| |||||||| || ||||||| ||||||||||||||||||||||||||||| ||||||||||||         ||| |||| ||||||||||    
T  9581848 ttctattgatcggatagtaatgtacaagg-aaacattcttccaattggaggaataagtaattagttattttt---------accaggagtaaaatgattg 9581759  T
Q  301 tggccattgggatattacattgtatgcgaagtgtcttgtcaattagaatctcggagattgattgaatctgtagcgggccattatccttgtatcgttgctg 400  Q
    |||  ||||||||||||| || ||| | |||||||||||||||| ||||  | ||||| | ||||||| ||||| ||||||| |||||||||||| ||||    
T  9581758 tggtgattgggatattaccttatatacaaagtgtcttgtcaatttgaattccagagatcgcttgaatcggtagcaggccattgtccttgtatcgtcgctg 9581659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 9587743 - 9587351
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||  |||||||||| ||||||||||||| ||||| |    
T  9587743 tttcacatatcaattttgggtgaatacggtataaaggagtcatggaccaaactcttcatggttggaccgttgtcttgcattgagcgtcctattggagtgg 9587644  T
Q  101 gtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaa 200  Q
    | | |||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9587643 gaacgaaaggagaaatattcgtcatcagacaagataaagaactagtttgtcttgatttaagtactcaaatgattgtggagcttgcttacaaagaagtgaa 9587544  T
Q  201 ctgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattg 300  Q
     | |||||| |||||||| || ||||||| ||||||||||||||||||||||||||||| ||||||||||||         ||| |||| ||||||||||    
T  9587543 ttctattgatcggatagtaatgtacaagg-aaacattcttccaattggaggaataagtaattagttattttt---------accaggagtaaaatgattg 9587454  T
Q  301 tggccattgggatattacattgtatgcgaagtgtcttgtcaattagaatctcggagattgattgaatctgtagcgggccattatccttgtatcgttgctg 400  Q
    |||  ||||||||||||| || ||| | |||||||||||||||| ||||  | ||||| | ||||||| ||||| ||||||| |||||||||||| ||||    
T  9587453 tggtgattgggatattaccttatatacaaagtgtcttgtcaatttgaattccagagatcgcttgaatcggtagcaggccattgtccttgtatcgtcgctg 9587354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 9602650 - 9602233
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||  |||||||||| |||||||||||||||| || |    
T  9602650 tttcaaatatcaattttgggtgaatacggtataaaggagtcgtggaccaaactctttaatgttggatcgttgtcttgcattgagcgtcctatcggggttg 9602551  T
Q  101 gtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaa 200  Q
    | | |||||||||||||||  |||||||| ||||||||||| |||||| ||||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  9602550 ggatgaaaggagaaatatttgtcatcagagaagataaagaagtagtttgtcttgatttaagtactcaatcggttgtggagctttcttacaaagaagtgaa 9602451  T
Q  201 ctgtatt-------gaccggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctgga----- 288  Q
     | ||||       || || ||| | |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||         
T  9602450 ttctattgatcgtcgatcgaatactaatatacaaggaaaacattcttccaatcggaggaataagtaattagttatttttcttgttttcaccaggagcaaa 9602351  T
Q  289 --gcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaattagaatctcggagattgattgaatctgtagcgggccattatcc 386  Q
      ||||||||||||  |  ||||||||||||| |||||||| |||||||||||||||| ||| | ||||||||  || |||| |||||||||||||||||    
T  9602350 atgcaaaatgattgcagtgattgggatattaccttgtatgcaaagtgtcttgtcaattggaaccccggagatttcttaaatcggtagcgggccattatcc 9602251  T
Q  387 ttgtatcgttgctgatgc 404  Q
    ||||||||| ||||||||    
T  9602250 ttgtatcgtcgctgatgc 9602233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 9569204 - 9569473
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    ||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||| ||||||||  |||||||||| ||||||||||||||||||| |    
T  9569204 tttcacatatcgattttgggtgaatatggcattaaggaatcgtggaccaaactcttccttgttggaccgttgtcttgcattgagcgtcctatcggagtgg 9569303  T
Q  101 gtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaa 200  Q
    | |  ||||||||||||||| ||||||||||||||||||| ||||||| | |||||||||||||||||| |||||||||||||| |||||||||||||||    
T  9569304 ggacaaaaggagaaatattcgtcatcagaaaagataaagagctagtttgtattgatttaagtactcaaatgattgtggagcttgtttacaaagaagtgaa 9569403  T
Q  201 ctgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttattt 270  Q
     | ||||||  ||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  9569404 ttctattgataggatagtaatatacaaggaaaatattcttccaattggaggaataagtaattagttattt 9569473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 255 - 410
Target Start/End: Original strand, 9569616 - 9569769
Alignment:
Q  255 aagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaattagaatctcgg 354  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||  |  |||||  ||    
T  9569616 aagtaattagttatttttcttgttttcacgaggagcaaaatgattgtggtgattgggatattaccttgtatgcaaagtgtcttgtc--taggaatcctgg 9569713  T
Q  355 agattgattgaatctgtagcgggccattatccttgtatcgttgctgatgctgatgt 410  Q
    |||||| || |||| |||||||||||||||||||||||||| ||||||||| ||||    
T  9569714 agattgctttaatcggtagcgggccattatccttgtatcgtcgctgatgcttatgt 9569769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 9606190 - 9606110
Alignment:
Q  332 tgtcttgtcaattagaatctcggagattgattgaatctgtagcgggccattatccttgtatcgttgctgatgctgatgtcc 412  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| ||||||    
T  9606190 tgtcttgtcaattagaatctcggagattgcttgaatcggtagcgagccattatccttgtatcgttgctgatgcttatgtcc 9606110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 54295146 - 54295006
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    |||||||||||||||||||||||||  ||| | |  || |||||||||||||| ||||||||||||  ||||||||  ||||||| |||||||||||| |    
T  54295146 tttcacatatcaattttgggtgaattcggtgtgatagaatcgtggaccaaacttttcattgttggaccgttgtcttatgttgagcatcctatcggagtgg 54295047  T
Q  101 gtaagaaaggagaaatattcttcatcagaaaagataaagaa 141  Q
    | | ||| || |||||||||||| | |||||||||||||||    
T  54295046 ggacgaagggggaaatattcttcgtaagaaaagataaagaa 54295006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37897957 - 37898014
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttca 58  Q
    |||||| ||||| ||||||| |||  |||||| ||||| |||||||||||||||||||    
T  37897957 tttcacgtatcagttttgggcgaacttggtatgaaggaatcgtggaccaaactcttca 37898014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 9571882 - 9571934
Alignment:
Q  80 ttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaa 132  Q
    |||||| ||||||| |||| || | ||||||||||||||||||||| ||||||    
T  9571882 ttgagcatcctatcagagtggggacgaaaggagaaatattcttcataagaaaa 9571934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 54291085 - 54291150
Alignment:
Q  211 cggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgtt 278  Q
    |||||| | ||||||||||||||||||||||| |||||| ||||  ||| ||| || |||||||||||    
T  54291085 cggataataatatacaaggaaaacattcttcccattggaagaat--gtaattaattgtttttcttgtt 54291150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 29131320 - 29131643
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    ||||||||||||||||||||||||| ||| ||||| || |||||||||||  ||||||||||||||   |||||| |||||||||||||||| ||||| |    
T  29131320 tttcacatatcaattttgggtgaatttggcataaaagaatcgtggaccaagatcttcattgttggaccattgtctggcgttgagcgtcctattggagtgg 29131419  T
Q  101 gtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaa 200  Q
    | |  |||||||||||||||||| | ||||||||| ||||||||||||  |||||||||||||| ||||  |||| || ||||| |||||||| ||||      
T  29131420 ggacaaaaggagaaatattcttcctaagaaaagatgaagaactagtttggcttgatttaagtacgcaaagaattgcggggcttggttacaaaggagtggg 29131519  T
Q  201 ctgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattg 300  Q
       || |   |||||| | ||||||||||| |||||||||||||||||||||| |||||  ||||| || ||| |||||||||  |||| ||||||||||    
T  29131520 tcatactagtcggataataatatacaaggataacattcttccaattggaggaacaagtaagtagtt-ttcttcctgttttcactgggaggaaaatgattg 29131618  T
Q  301 tggccattgggatattacattgtat 325  Q
     || ||||||| |||||| ||||||    
T  29131619 cggtcattgggctattaccttgtat 29131643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 29012844 - 29013036
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    |||||||||||||||||||| || |  ||| | ||||| || ||||||||||||||||||||||||  ||||||||||||| |||||||||||||||| |    
T  29012844 tttcacatatcaattttgggggatttcggtgtgaaggaatcatggaccaaactcttcattgttggaccgttgtcttgcgttaagcgtcctatcggagtgg 29012943  T
Q  101 gtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaag 193  Q
    | | ||||||||||||||||||||||||||||||| ||||||||||||  |||||||| ||||| |||| ||||| |||| ||| ||| ||||    
T  29012944 ggacgaaaggagaaatattcttcatcagaaaagatgaagaactagtttggcttgatttgagtacccaaatgattgaggaggttggttataaag 29013036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 8 - 318
Target Start/End: Complemental strand, 32740773 - 32740480
Alignment:
Q  8 tatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaa 107  Q
    ||||||||||||||||||  || |||||||| |||||||||||||||||||||||||||   |||||| | ||| | |||||||| ||||| || | |||    
T  32740773 tatcaattttgggtgaattcggcataaaggaatcgtggaccaaactcttcattgttggaccattgtctggtgttcaacgtcctattggagtggggacgaa 32740674  T
Q  108 aggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtatt 207  Q
    |||||||||||||||| | ||||||||| ||||||||||||  ||||||||| |||| |||| ||||| |||||||| ||||     |||              
T  32740673 aggagaaatattcttcctaagaaaagatgaagaactagtttggcttgatttatgtacacaaaggattgcggagcttggttac----tagt---------- 32740588  T
Q  208 gaccggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccat 307  Q
       |||||| | |||||| |||| || ||||||| ||||||||||| ||||| |||||| ||||||||||||||||  |||| |||||||||  || |||    
T  32740587 ---cggataataatatacgaggataatattcttcaaattggaggaacaagtaattagttttttttcttgttttcactgggaggaaaatgatttcggtcat 32740491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 184
Target Start/End: Complemental strand, 29152156 - 29152012
Alignment:
Q  40 tcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaag 139  Q
    ||||||| |||||||||||| ||||||  |||| ||| ||||||||||||||||||||| || || || || ||||||||||| || |||||||||||||    
T  29152156 tcgtggatcaaactcttcatggttggaccgttgccttacgttgagcgtcctatcggagtggggaaaaatggggaaatattctttataagaaaagataaag 29152057  T
Q  140 aactagtttatcttgatttaagtactcaaacgattgtggagcttg 184  Q
    || ||| ||   ||||| | |||||||||| ||||| ||||||||    
T  29152056 aagtagcttggtttgatctgagtactcaaatgattgaggagcttg 29152012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 32960792 - 32960616
Alignment:
Q  8 tatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaa 107  Q
    |||||||||||| ||||   ||||| ||||| || |||| ||||||||| |||||| ||   ||| |||| |||||||||||||| ||||| || |||||    
T  32960792 tatcaattttggatgaaatcggtatgaaggaatcttggatcaaactctttattgttagaccattgccttgtgttgagcgtcctatgggagtggggaagaa 32960693  T
Q  108 aggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttg 184  Q
     || |||||||||||||| ||||||||| ||||| ||||||   |||||||  |||| |||| ||||||| ||||||    
T  32960692 gggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgggtacccaaatgattgtgaagcttg 32960616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 29124160 - 29124343
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    ||||| ||||||||| |||||||    ||||| ||||| || |||||||| ||||||| | | |||   ||| |||| ||||| |||||||| ||||| |    
T  29124160 tttcagatatcaattctgggtgagatcggtatgaaggaatcatggaccaagctcttcactatgggaccattgccttgtgttgatcgtcctattggagtgg 29124259  T
Q  101 gtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttg 184  Q
    ||| ||| || |||||||||||||| ||||||||||||||||||| ||   ||||||| ||||| |||| ||||| ||||||||    
T  29124260 gtatgaagggggaaatattcttcattagaaaagataaagaactagcttggtttgatttgagtacccaaatgattgaggagcttg 29124343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 34281969 - 34282070
Alignment:
Q  40 tcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaag 139  Q
    ||||||| ||||||||| || ||||||  |||| ||| ||||||||||||||||||||| || |  || || |||||||||||||| |||||||||||||    
T  34281969 tcgtggatcaaactctttatggttggaccgttgccttacgttgagcgtcctatcggagtggggacaaagggggaaatattcttcataagaaaagataaag 34282068  T
Q  140 aa 141  Q
    ||    
T  34282069 aa 34282070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 32744926 - 32744743
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    ||||||||||||||| |||||||   |||||| || || || |||||||| ||||||| | |||||   ||| |||||||||| || ||||| ||||| |    
T  32744926 tttcacatatcaattatgggtgagattggtatgaaagaatcatggaccaatctcttcactattggaccattgccttgcgttgatcggcctattggagtgg 32744827  T
Q  101 gtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttg 184  Q
    |||  || || |||||||||||||| ||||| ||| ||||||| | ||   ||||||| ||||| |||| ||||| ||||||||    
T  32744826 gtacaaagggggaaatattcttcataagaaacgatgaagaactggcttggtttgatttgagtacccaaatgattgaggagcttg 32744743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 29300090 - 29300182
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatc 93  Q
    |||||||||||||||||||||||     |||||||||| ||||||||||| ||||||| |||||||  |||| |||||||  |||||||||||    
T  29300090 tttcacatatcaattttgggtgagctcagtataaaggaatcgtggaccaatctcttcaatgttggaccgttggcttgcgtccagcgtcctatc 29300182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 29145308 - 29145651
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    |||||||||||||||||||||| ||  ||||| ||||| || |||||||||||||| ||| |||||    | |||||| || ||| |||||||||||| |    
T  29145308 tttcacatatcaattttgggtggattaggtatgaaggaatcatggaccaaactctttattcttggaccactatcttgcattaagcatcctatcggagttg 29145407  T
Q  101 gtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaa 200  Q
    | |  ||||| |||||||||||    ||||||||  ||||| |||| |   ||||| ||||||| |||| ||||| ||| |||| ||| ||||    |      
T  29145408 ggataaaaggggaaatattctttcaaagaaaagacgaagaattagtctggtttgatctaagtacccaaaagattgaggaacttggttataaagctagggg 29145507  T
Q  201 ctgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattg 300  Q
     |||  |   || ||| | |||||||||||| ||||||||||||||||||||  |||||  || || ||||||||||| |||||  |||  | |||||||    
T  29145508 ttgttctactcgaataataatatacaaggaatacattcttccaattggaggagcaagtagctaattgtttttcttgttatcaccaagaggtatatgattg 29145607  T
Q  301 tggccattgggatattacattgtatgcgaagtgtcttgtcaatt 344  Q
    |||   ||| ||||||||||| ||||| || ||  |||||||||    
T  29145608 tggttgttgagatattacattttatgcaaactggtttgtcaatt 29145651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 34278471 - 34278373
Alignment:
Q  43 tggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaa 141  Q
    |||| |||||||||||| ||||||  |||| ||| ||||||||||||||||||||| || |  || ||  ||||||||||||| | |||||||||||||    
T  34278471 tggatcaaactcttcatggttggaccgttgccttacgttgagcgtcctatcggagtggggacaaaggggaaaatattcttcataataaaagataaagaa 34278373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 19697430 - 19697377
Alignment:
Q  106 aaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgattta 159  Q
    |||||||||||||||||||| |||||  || |||||||||||| ||||||||||    
T  19697430 aaaggagaaatattcttcattagaaagaatgaagaactagtttgtcttgattta 19697377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 34258209 - 34258133
Alignment:
Q  112 gaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgctta 188  Q
    |||||||||||||| |||||||||||| |||||| ||   || |||| || || |||||||||| ||||||||||||    
T  34258209 gaaatattcttcataagaaaagataaaaaactagcttggtttaatttgagcacccaaacgattgaggagcttgctta 34258133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 286368 - 286324
Alignment:
Q  80 ttgagcgtcctatcggagtaggtaagaaaggagaaatattcttca 124  Q
    ||||||||||||| |||||||| |||||||| || ||||||||||    
T  286368 ttgagcgtcctattggagtagggaagaaaggtgatatattcttca 286324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 29137301 - 29137477
Alignment:
Q  8 tatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaa 107  Q
    |||| ||||||||||||  |||||| |||||  | |||||||  |||||||  ||| ||   ||| |||| |||||||||||| | ||||| || |  ||    
T  29137301 tatctattttgggtgaagttggtatgaaggaaacatggaccaggctcttcacagttagaccattgccttgtgttgagcgtccttttggagtggggacaaa 29137400  T
Q  108 aggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttg 184  Q
     || ||||||| ||| |  ||||||||||||||||||| ||   ||||||||||||| |||| ||| | ||||||||    
T  29137401 gggggaaatatcctttacaagaaaagataaagaactagcttggtttgatttaagtacccaaatgatcgaggagcttg 29137477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 42446349 - 42446690
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    ||||||||||||||||||||||||  || ||| ||||| || |||||||||||| |||||||||||  ||||  ||| |||||||||||||||| ||| |    
T  42446349 tttcacatatcaattttgggtgaacttgctatcaaggaatcatggaccaaactcgtcattgttggaccgttgcattgtgttgagcgtcctatcgaagtgg 42446448  T
Q  101 gtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaa 200  Q
    | | ||||||||||||||||||||| |||||||||  |||||||| ||  ||||||||||||||  | | ||||| || ||||| ||| |||| || |      
T  42446449 ggatgaaaggagaaatattcttcattagaaaagatggagaactagcttggcttgatttaagtaccaagatgattgaggggcttggttataaaggaggggg 42446548  T
Q  201 ctgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattg 300  Q
       || ||  ||| || | ||||||||||||||||||||||||||||||||||||| || ||| || |||||||||||||||||  |||  | |||||||    
T  42446549 tcctactgctcgggtaataatatacaaggaaaacattcttccaattggaggaataattaattaattgtttttcttgttttcaccaagaggtatatgattg 42446648  T
Q  301 tggccattgggatattacattgtatgcgaagtgtcttgtcaa 342  Q
    |||   ||| |||||||| |||||| | ||||  ||||||||    
T  42446649 tggttcttgagatattaccttgtatacaaagtcccttgtcaa 42446690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 7793871 - 7794015
Alignment:
Q  40 tcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaag 139  Q
    |||||||| |||||||||||| |||||   || |||| | | ||||||||||| ||||| || | |||||| ||||||||||||   |||||||| | ||    
T  7793871 tcgtggactaaactcttcattattggaccattttctttcatcgagcgtcctattggagtggggacgaaaggggaaatattcttccaaagaaaagacagag 7793970  T
Q  140 aactagtttatcttgatttaagtactcaaacgattgtggagcttg 184  Q
    || |||| |   ||||| ||||||| |||| |||||  |||||||    
T  7793971 aattagtattgtttgatctaagtacccaaatgattgaagagcttg 7794015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 39884 - 39601
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    ||||||||| ||||||||||||||   || || ||||| ||||||| ||||||||| | |||||||  |||||||||||||||||||||||||||||| |    
T  39884 tttcacatagcaattttgggtgaactcggcattaaggaatcgtggatcaaactctttactgttggaccgttgtcttgcgttgagcgtcctatcggagtgg 39785  T
Q  101 gtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaag-aagtga 199  Q
    | |  ||||| ||||| ||||||   ||||||||||| ||| ||| ||   ||||| ||||||| |||  |||||  ||||||| ||| |||| ||| |     
T  39784 ggacaaaaggggaaattttcttccaaagaaaagataatgaattagcttggtttgatctaagtacccaagtgattgaagagcttggttataaagcaagggg 39685  T
Q  200 actgtattgac-cggatagtca-tatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacc 284  Q
     |  |||  || |||||| ||| ||||||||||||||||||||  ||||| ||||||||||| ||| ||||||||||||||||||||    
T  39684 tccttat--actcggata-tcactatacaaggaaaacattcttgtaattgaaggaataagtaattaattatttttcttgttttcacc 39601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 5 - 284
Target Start/End: Complemental strand, 33529 - 33250
Alignment:
Q  5 acatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaa 104  Q
    ||||| ||||||||||||||   || || ||||| ||||||||||||||||||| |||||||  ||||||||||||||||||||||||| |||| || |     
T  33529 acatagcaattttgggtgaactcggcattaaggaatcgtggaccaaactcttcactgttggaccgttgtcttgcgttgagcgtcctatcagagtggggac 33430  T
Q  105 gaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaag-aagtgaactg 203  Q
    |||||| ||||| ||||||   || |||||||| ||| ||| ||   ||||| ||||||| |||  |||||  ||||||| ||| |||| ||| |  |      
T  33429 gaaaggggaaattttcttccaaaggaaagataatgaattagcttggtttgatctaagtacccaagtgattgaagagcttggttataaagcaaggggtcct 33330  T
Q  204 tattgac-cggatagtca-tatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacc 284  Q
    |||  || |||||| ||| |||||||||||||||||||| | |||| ||||||||||| ||| ||||||||| ||||||||||    
T  33329 tat--actcggata-tcactatacaaggaaaacattcttgccattgaaggaataagtaattaattatttttcatgttttcacc 33250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 16291 - 16037
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    ||||||||||||||||||||||||  |||||  ||||| || |||| ||| ||||||| | |||||   ||||||||||||  | ||||||||||||| |    
T  16291 tttcacatatcaattttgggtgaaattggtaagaaggaatcatggatcaatctcttcactattggaccattgtcttgcgttaggtgtcctatcggagtgg 16192  T
Q  101 gtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaa 200  Q
    | |  ||||| ||| ||||||||   ||||| ||| ||||| ||| ||   ||||| | | |||||||| ||||| ||| |||| ||| |||| || | |    
T  16191 ggacaaaaggggaattattcttccaaagaaaggatgaagaattagcttggtttgatcttaatactcaaatgattgaggaacttggttataaagcagggga 16092  T
Q  201 ctgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaata 255  Q
     |||  ||  |||||| | |||||||||| |||||||||| ||  ||||||||||    
T  16091 ttgttgtgctcggataataatatacaaggtaaacattcttacagatggaggaata 16037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 42413999 - 42414063
Alignment:
Q  2 ttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttgga 66  Q
    ||||||| ||||||||||| |||| |||| |||||||||| ||||| |||||||| |||||||||    
T  42413999 ttcacatttcaattttgggcgaatttggtgtaaaggagtcatggactaaactctttattgttgga 42414063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 39724635 - 39724570
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttgga 66  Q
    |||||||||||||||||||| |||   |||||||| || || ||||| ||||||||||||||||||    
T  39724635 tttcacatatcaattttgggggaactcggtataaaagaatcatggactaaactcttcattgttgga 39724570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 15807783 - 15807722
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgt 62  Q
    ||||||||||||||||||||||||  |||  | || ||||| |||||||||||||| |||||    
T  15807783 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgt 15807722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 43323021 - 43323054
Alignment:
Q  223 tacaaggaaaacattcttccaattggaggaataa 256  Q
    |||||||||||||| |||||||||||||||||||    
T  43323021 tacaaggaaaacatgcttccaattggaggaataa 43323054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 10487 - 10546
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcatt 60  Q
    ||||||||||||||||||||||||  |||| | |||||||| ||||| ||||||||||||    
T  10487 tttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttcatt 10546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 209 - 331
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    ||||||||||||||||||||||||  ||| |  || || || |||||||| | ||||| | |||||   |||||||||||||||  |||||||||||| |    
T  209 tttcacatatcaattttgggtgaaattggaaagaatgaatcatggaccaatcacttcactattggaccattgtcttgcgttgagtttcctatcggagtgg 308  T
Q  101 gtaagaaaggagaaatattcttc 123  Q
    | || ||||| ||| ||||||||    
T  309 ggaaaaaaggggaattattcttc 331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5162456 - 5162519
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttg 64  Q
    ||||||||||||||||||||||||  |||| | ||||| || |||| ||||||||||| |||||    
T  5162456 tttcacatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaactcttcactgttg 5162519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 368807 - 368872
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttgga 66  Q
    ||||||||||||||| | ||||||  |||| | ||||| || |||| |||||||||||||||||||    
T  368807 tttcacatatcaattcttggtgaaattggtgtgaaggaatcatggatcaaactcttcattgttgga 368872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 7488818 - 7488694
Alignment:
Q  1 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtag 100  Q
    ||||||||||||||||||||||||  |||| | || || || ||||  ||||| |||| |||||||   |||||||| ||||  ||||||||| ||| ||    
T  7488818 tttcacatatcaattttgggtgaaattggtgtgaaagaatcatggaaaaaacttttcaatgttggaccattgtcttgtgttgcacgtcctatcagaggag 7488719  T
Q  101 gtaagaaaggagaaatattcttcat 125  Q
    | ||||| || || || ||||||||    
T  7488718 ggaagaatggggatattttcttcat 7488694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University