View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8890_low_38 (Length: 401)

Name: NF8890_low_38
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8890_low_38
NF8890_low_38
[»] chr4 (2 HSPs)
chr4 (20-386)||(30774324-30774690)
chr4 (246-339)||(35131757-35131850)
[»] chr7 (9 HSPs)
chr7 (44-339)||(8615811-8616106)
chr7 (20-385)||(8586437-8586802)
chr7 (213-353)||(8666684-8666821)
chr7 (113-338)||(10495149-10495374)
chr7 (176-327)||(6788740-6788891)
chr7 (113-298)||(13334183-13334368)
chr7 (213-336)||(17259498-17259621)
chr7 (210-336)||(17267198-17267324)
chr7 (176-276)||(8674450-8674550)
[»] chr2 (1 HSPs)
chr2 (20-351)||(16662760-16663091)
[»] chr1 (2 HSPs)
chr1 (20-298)||(15594110-15594388)
chr1 (176-334)||(29465080-29465238)
[»] chr5 (1 HSPs)
chr5 (79-127)||(28219049-28219097)
[»] chr8 (1 HSPs)
chr8 (47-130)||(43743915-43743998)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 386
Target Start/End: Original strand, 30774324 - 30774690
Alignment:
Q  20 aattgcatcattgatctttttgagtttttgagatgatagctttaaatttacgtccataatctttagagcattcctcaacctgtaaatgcagccatctaat 119  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||    
T  30774324 aattgcatcagtgatctttttgagtttttgagatgatagctttaaatttacgtccttaatctttagaccattcctcaacttgtaaatgcagcaatctaat 30774423  T
Q  120 gcattcattaccatagacttccttaagaatatcatatcttcagcccagtactctctagcttcttgaatcatttttataatttcttctctggataaccttt 219  Q
    ||||||||||||||||||||||||| |||| ||  ||||||||| | |||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  30774424 gcattcattaccatagacttccttaggaatttctcatcttcagcacggtactctctagcttcttgaatcattttgttaatttcttctctggataaccttt 30774523  T
Q  220 ctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagcagaaacattcagtataccattttcgtctatagtgaagcatacatc 319  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  30774524 ctttgtcgttggttatcgtgatctcattcatattgccagtggatttttccatagcagaaacattcagtataccattttcgttgatagtgaagcatacatc 30774623  T
Q  320 caaaggatggccacgaggagtacctggaagacaagaaagaataaaagaacctagcagattgatgtcc 386  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  30774624 caaaggttggccacgaggagtatctggaagacaagaaagaataaaagaacctagcagattgttgtcc 30774690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 35131757 - 35131850
Alignment:
Q  246 ttcatattgccagtggatttttccatagcagaaacattcagtataccattttcgtctatagtgaagcatacatccaaaggatggccacgaggag 339  Q
    ||||| ||||| |||||||||||| ||||||||||| |||  ||||||||||| || ||||| || || |||||  |||| ||||| |||||||    
T  35131757 ttcattttgccggtggatttttccttagcagaaacagtcaaaataccattttcatcgatagtaaaacaaacatcgtaagggtggccgcgaggag 35131850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 44 - 339
Target Start/End: Original strand, 8615811 - 8616106
Alignment:
Q  44 tttttgagatgatagctttaaatttacgtccataatctttagagcattcctcaacctgtaaatgcagccatctaatgcattcattaccatagacttcctt 143  Q
    ||||||||||||||||||||||   || ||| || |||||||||||||||||||| ||||||||||| |||||||| ||||||||||| | | |||||||    
T  8615811 tttttgagatgatagctttaaagcaacatccttattctttagagcattcctcaacttgtaaatgcagtcatctaattcattcattaccttggccttcctt 8615910  T
Q  144 aagaatatcatatcttcagcccagtact-ctctagcttcttgaatcatttttataatttcttctctggataacctttctttgtcgttggttatcgtgatc 242  Q
    | |||| |   ||||||||| | ||||| |||| ||||||||||||| |||| ||||||| ||    ||||||||||||||||| ||||||||||| ||     
T  8615911 aggaatttttcatcttcagcgcggtactcctct-gcttcttgaatcagttttttaatttcatcagccgataacctttctttgtcattggttatcgttatt 8616009  T
Q  243 tcgttcatattgccagtggatttttccatagcagaaacattcagtataccattttcgtctatagtgaagcatacatccaaaggatggccacgaggag 339  Q
    || ||  |||||||||| ||||||||| | ||||| ||| | || |||||||| ||||| || ||||||||||| ||||| |||||| ||| |||||    
T  8616010 tcatttgtattgccagtagatttttccttcgcagatacagtaaggataccattatcgtcgatggtgaagcatacctccaagggatggtcacaaggag 8616106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 385
Target Start/End: Complemental strand, 8586802 - 8586437
Alignment:
Q  20 aattgcatcattgatctttttgagtttttgagatgatagctttaaatttacgtccataatctttagagcattcctcaacctgtaaatgcagccatctaat 119  Q
    |||||||| |||||||||||| | ||||||||| ||   |||||  || |  ||| || |||||||||||||||| ||| ||||||  ||  ||||||||    
T  8586802 aattgcatgattgatctttttaactttttgagaagagcactttagtttaatatccttattctttagagcattccttaacttgtaaacacaatcatctaat 8586703  T
Q  120 gcattcattaccatagacttccttaagaatatcatatcttcagcccagtactc-tctagcttcttgaatcatttttataatttcttctctggataacctt 218  Q
    | |||||||||| ||| |||||||| |||| ||  ||| |||||   |||| | ||| ||||||||||||| | || ||||||| ||    |||||||||    
T  8586702 gaattcattaccttagccttccttaggaatttctgatcctcagcgaggtacacctct-gcttcttgaatcagtcttttaatttcatcagccgataacctt 8586604  T
Q  219 tctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagcagaaacattcagtataccattttcgtctatagtgaagcatacat 318  Q
    |||||||| ||||||||||| || |||||  ||||||||| |||| ||||| | ||||||||| | || ||||||||||| || || ||||||||||| |    
T  8586603 tctttgtcattggttatcgttatttcgtttgtattgccagaggatatttccttcgcagaaacagttaggataccattttcatcgatggtgaagcatacct 8586504  T
Q  319 ccaaaggatggccacgaggagtacctggaagacaagaaagaataaaagaacctagcagattgatgtc 385  Q
    | || ||||| |||||||||| ||| || |  || |||||| ||||| | || ||||||||| ||||    
T  8586503 caaagggatgcccacgaggagcacccgggacgcacgaaagattaaaaaagccaagcagattgttgtc 8586437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 8666684 - 8666821
Alignment:
Q  213 aacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagcagaaacattcagtataccattttcgtctatagtgaagc 312  Q
    |||||||||||||| |||||||| ||||||  |||||||||||| |||||| ||||| |||||| |||| |||| ||||||||||| || || |  ||||    
T  8666684 aacctttctttgtcattggttatggtgatcatgttcatattgcctgtggatatttccctagcagtaacagtcaggataccattttcatcaattgaaaagc 8666783  T
Q  313 atacatccaaaggatggccacgaggagtacctggaagacaa 353  Q
    |||| ||||| || |||||||| ||   |||||||||||||    
T  8666784 atacctccaagggctggccacgggg---acctggaagacaa 8666821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 338
Target Start/End: Complemental strand, 10495374 - 10495149
Alignment:
Q  113 atctaatgcattcattaccatagacttccttaagaatatcatatcttcagcccagtactctctagcttcttgaatcatttttataatttcttctctggat 212  Q
    |||||||||| |||||||| | | ||||||||||||| ||||||||||  |   ||| |   ||||||||| |||||||||| ||||||||    | ||     
T  10495374 atctaatgcactcattaccttggccttccttaagaatttcatatcttcgacatggtatttcttagcttctttaatcatttttttaatttctaacattgac 10495275  T
Q  213 aacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagcagaaacattcagtataccattttcgtctatagtgaagc 312  Q
    |||||||||||||| || || || |||||| ||||||||||||| || ||| | ||| |||||| |||| |||| || |||||||| || || |  ||||    
T  10495274 aacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaacagtcaggatgccattttcatcaatggaaaagc 10495175  T
Q  313 atacatccaaaggatggccacgagga 338  Q
    |||| ||||| || ||||||||||||    
T  10495174 atacctccaagggctggccacgagga 10495149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 327
Target Start/End: Original strand, 6788740 - 6788891
Alignment:
Q  176 agcttcttgaatcatttttataatttcttctctggataacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagca 275  Q
    |||||||| ||||| |||| ||||||| || ||  | |||||||||||||  |||||||| || ||||| ||||||||||| |||||||||||  |||||    
T  6788740 agcttctttaatcaattttttaatttcgtcactacacaacctttctttgtaattggttatggtaatctcattcatattgcccgtggatttttcagtagca 6788839  T
Q  276 gaaacattcagtataccattttcgtctatagtgaagcatacatccaaaggat 327  Q
    |||||  |||  ||||||||||| || ||||  ||  ||||||| |||||||    
T  6788840 gaaacggtcaaaataccattttcatcaatagaaaaatatacatcaaaaggat 6788891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 298
Target Start/End: Complemental strand, 13334368 - 13334183
Alignment:
Q  113 atctaatgcattcattaccatagacttccttaagaatatcatatcttcagcccagtactctctagcttcttgaatcatttttataatttcttctctggat 212  Q
    ||||||||||||||||||| | | ||||||||||||| || |||||||  |   ||| ||  ||||||||| ||||||||||  |||||||    | |||    
T  13334368 atctaatgcattcattaccttggccttccttaagaatttcttatcttcgacatggtattccttagcttctttaatcattttttcaatttctaacattgat 13334269  T
Q  213 aacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagcagaaacattcagtataccattttc 298  Q
    |||||||||||||| || || || |||||| ||||||||||||| || ||| | ||| |||||| |||  |||| || ||||||||    
T  13334268 aacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaaccgtcaggatgccattttc 13334183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 336
Target Start/End: Original strand, 17259498 - 17259621
Alignment:
Q  213 aacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagcagaaacattcagtataccattttcgtctatagtgaagc 312  Q
    |||||| ||||||| |||||||| || ||||| ||| || ||||||||||||| ||||||||||||||  |||  ||||||||||  || |||   ||||    
T  17259498 aaccttcctttgtcattggttattgtaatctcattcttactgccagtggatttgtccatagcagaaactgtcaaaataccattttgatcgatatcaaagc 17259597  T
Q  313 atacatccaaaggatggccacgag 336  Q
    |||| || |||||||| |||||||    
T  17259598 atacttcaaaaggatgaccacgag 17259621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 336
Target Start/End: Original strand, 17267198 - 17267324
Alignment:
Q  210 gataacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagcagaaacattcagtataccattttcgtctatagtga 309  Q
    ||||||||| ||||||| |||||||| || ||||| ||| || | ||||||||||| ||||||||||||||  |||  ||||||||||  || | |   |    
T  17267198 gataaccttcctttgtcattggttattgtaatctcattcttactaccagtggatttgtccatagcagaaactgtcaaaataccattttgatcgacatcaa 17267297  T
Q  310 agcatacatccaaaggatggccacgag 336  Q
    |||||||||| |||| |||||||||||    
T  17267298 agcatacatcaaaagaatggccacgag 17267324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 8674550 - 8674450
Alignment:
Q  176 agcttcttgaatcatttttataatttcttctctggataacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagca 275  Q
    |||||||||||||| |||  ||||||||||| | || ||||||||||||| ||| ||||| || ||||||||  |||| || ||||||| |||| |||||    
T  8674550 agcttcttgaatcaatttgttaatttcttctattgacaacctttctttgttgtttgttattgttatctcgttggtatttccggtggattgttccttagca 8674451  T
Q  276 g 276  Q
    |    
T  8674450 g 8674450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 20 - 351
Target Start/End: Complemental strand, 16663091 - 16662760
Alignment:
Q  20 aattgcatcattgatctttttgagtttttgagatgatagctttaaatttacgtccataatctttagagcattcctcaacctgtaaatgcagccatctaat 119  Q
    |||||||| ||||||||||||   ||||||  | || |||||||| || || | | || |||||||||||||||||||  ||||||||||| ||||||||    
T  16663091 aattgcatgattgatctttttatttttttggaaagaaagctttaatttgacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaat 16662992  T
Q  120 gcattcattaccatagacttccttaagaatatcatatcttcagcccagtactctctagcttcttgaatcatttttataatttcttctctggataaccttt 219  Q
    |||||||||||| | | |||||||| |||| ||  |||||||||   ||||||  ||||||||||||||| ||||  ||||||  |||||||||||||||    
T  16662991 gcattcattaccttggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataaccttt 16662892  T
Q  220 ctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagcagaaacattcagtataccattttcgtctatagtgaagcatacatc 319  Q
    ||||||| ||||||||||||||||| ||| || | || |||||| |||||   || |||||| | |  || || ||||| || ||||  |||||||||||    
T  16662891 ctttgtcattggttatcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagcatacatc 16662792  T
Q  320 caaaggatggccacgaggagtacctggaagac 351  Q
    ||| |||||||||||||||  || ||||||||    
T  16662791 caagggatggccacgaggaacacttggaagac 16662760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 15594110 - 15594388
Alignment:
Q  20 aattgcatcattgatctttttgagtttttgagatgatagctttaaatttacgtccataatctttagagcattcctcaacctgtaaatgcagccatctaat 119  Q
    ||||||| ||||||||||| | | || || ||| || || ||||| || || ||| || |||| |||||||| |||||| ||||||  ||| ||||||||    
T  15594110 aattgcaccattgatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaat 15594209  T
Q  120 gcattcattaccatagacttccttaagaatatcatatcttcagcccagtactctctagcttcttgaatcatttttataatttcttctctggataaccttt 219  Q
    ||||||||||||   | |||||||| |||| ||  ||||||||| |  || ||    |||||||||||||||||| ||||||| | |   || |||||||    
T  15594210 gcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaatttcatatgctgacaaccttt 15594309  T
Q  220 ctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagcagaaacattcagtataccattttc 298  Q
    ||||||| |||||||| |||||||||||  |||||||||||||| ||||| |  |||||||| |||| ||| |||||||    
T  15594310 ctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcaggatagcattttc 15594388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 334
Target Start/End: Original strand, 29465080 - 29465238
Alignment:
Q  176 agcttcttgaatcatttttataatttcttctctggataacctttctttgtcgttggttatcgtgatctcgttcatattgccagtggatttttccatagca 275  Q
    |||||||| ||||||||||  |||||||    | ||||||||||||||| | || || || |||||| | ||||||||| |||| ||| ||||| |||||    
T  29465080 agcttctttaatcattttttcaatttctaacgttgataacctttctttgccattagtaatggtgatcacattcatattgtcagtagatatttccttagca 29465179  T
Q  276 gaaacattcagtataccattttcgtctatagtgaagcatacatccaaaggatggccacg 334  Q
    | |||| | || || |||||||| || || |  |||||||| ||||| || ||||||||    
T  29465180 gtaacagttaggatgccattttcatcaatggaaaagcatacctccaagggctggccacg 29465238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 28219049 - 28219097
Alignment:
Q  79 tctttagagcattcctcaacctgtaaatgcagccatctaatgcattcat 127  Q
    |||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  28219049 tctttagagcattcctcaacttgtaaacgcagtcatctaatgcattcat 28219097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 43743915 - 43743998
Alignment:
Q  47 ttgagatgatagctttaaatttacgtccataatctttagagcattcctcaacctgtaaatgcagccatctaatgcattcattac 130  Q
    |||||| || |||||||| || || ||| || |||||| ||||||||||||| ||||||  ||  |||||||||||||||||||    
T  43743915 ttgagaagaaagctttaatttaacatccttattctttacagcattcctcaacttgtaaacccattcatctaatgcattcattac 43743998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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