View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8890_low_44 (Length: 374)
Name: NF8890_low_44
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_44 |
 | |
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| [»] scaffold0196 (1 HSPs) |
| | |
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| [»] scaffold0019 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 366
Target Start/End: Original strand, 11755624 - 11755978
Alignment:
| Q |
12 |
atggacatcagtcctccaactatcaattgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgtg |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
11755624 |
atggacaacagtcctccaactatcaattgcattagtaattctttttcgcgctattggattggcaacaattgcatcgttggtggtgatatttttgaccgtg |
11755723 |
T |
|
| Q |
112 |
cttttgaatgctccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtga |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
11755724 |
cttttgaatgctccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaggctctggtga |
11755823 |
T |
|
| Q |
212 |
acatgaaagtgctaaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtactatt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
11755824 |
acatgaaagtgctaaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtgctatt |
11755923 |
T |
|
| Q |
312 |
acaaaaggcatacagccttatgctcttttggttttcacctactttggtctctgct |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11755924 |
acaaaaggcatacagccttatgctcttttggttttcacctactttggtctctgct |
11755978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 366
Target Start/End: Complemental strand, 12094311 - 12093957
Alignment:
| Q |
12 |
atggacatcagtcctccaactatcaattgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgtg |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
12094311 |
atggacaacagtcctccaactatcaattgcattagtaattctttttcgtgctattggattggcaacaattgcgtcattggtggtgatagttttgaccgtg |
12094212 |
T |
|
| Q |
112 |
cttttgaatgctccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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|
| T |
12094211 |
tttttgaatgctccactagcaaagttacaacataagtatcttagtaaacttctggtggcccaagatgaaaggttgaaggctagttctgaggctctggtga |
12094112 |
T |
|
| Q |
212 |
acatgaaagtgctaaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtactatt |
311 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
12094111 |
atatgaaagtgctaaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaacaaaaattgttatcttcagtgttatt |
12094012 |
T |
|
| Q |
312 |
acaaaaggcatacagccttatgctcttttggttttcacctactttggtctctgct |
366 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12094011 |
acaaaaggcatacagccttattctcttttggttttcacctactttggtctctgct |
12093957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 76 - 258
Target Start/End: Complemental strand, 11740019 - 11739837
Alignment:
| Q |
76 |
acaattgcatcgttggtggtgatagttttgaccgtgcttttgaatgctccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaag |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| || ||| |||||||||||||||||||||||||||||||||| |||||||| ||||| |||| |
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|
| T |
11740019 |
acaattgcatcgttggtggtgatagttttgacggcgctattaaatactccactagcaaagttacaacataagtatctaagcaaacttctcgtggcacaag |
11739920 |
T |
|
| Q |
176 |
atgaaaggttgaaagctagttctgaagctctggtgaacatgaaagtgctaaagttatatgcatgggaaatgcattttaaaaat |
258 |
Q |
| |
|
|||||||||| || |||||||| || ||||| ||||| |||||||| | ||||||||||||||||||| |||||||||||| |
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|
| T |
11739919 |
atgaaaggttaaaggctagttccgaggctctagtgaatgtgaaagtgttgaagttatatgcatgggaaacccattttaaaaat |
11739837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 258
Target Start/End: Complemental strand, 11632223 - 11632002
Alignment:
| Q |
37 |
attgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgtgcttttgaatgctccactagcaaagt |
136 |
Q |
| |
|
|||||||||||||||||||| ||| | | |||| | ||||| ||||||| |||| |||||||||| | || ||| ||| ||| |||||||||||||| |
|
|
| T |
11632223 |
attgcattagtaattcttttccgcacaattggactagcaacgcttgcatcattggcggtgatagttctcactgtgatttgcaattatccactagcaaagt |
11632124 |
T |
|
| Q |
137 |
tacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtgaacatgaaagtgctaaagttatatgc |
236 |
Q |
| |
|
||||||| ||||||| || |||||| ||||||| |||||||| || || || |||||||| || ||||| ||||| ||||||||| | ||||| ||||| |
|
|
| T |
11632123 |
tacaacacaagtatcagagcaaacttatggtggcacaagatgagagattaaaggctagttcggaggctcttgtgaatatgaaagtgttgaagttgtatgc |
11632024 |
T |
|
| Q |
237 |
atgggaaatgcattttaaaaat |
258 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
11632023 |
gtgggaaaatcattttaaaaat |
11632002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 258
Target Start/End: Complemental strand, 11710768 - 11710547
Alignment:
| Q |
37 |
attgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgtgcttttgaatgctccactagcaaagt |
136 |
Q |
| |
|
||||||||||||||||||| || || | |||| | |||||||| || || |||||||||||||| |||| ||||||| || ||||| ||||||||| |
|
|
| T |
11710768 |
attgcattagtaattctttaccgagcaattggactagcaacaatagcttcaatggtggtgatagttctgactgtgctttgcaacactccaatagcaaagt |
11710669 |
T |
|
| Q |
137 |
tacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtgaacatgaaagtgctaaagttatatgc |
236 |
Q |
| |
|
||||| | |||| || || ||||| ||||||| ||||| || || ||||| |||||||| || ||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
11710668 |
tacaaaacaagtttcagagcgaacttatggtggcacaagacgagagattgaaggctagttccgaggctcttgtgaatatgaaagtgctcaagttatatgc |
11710569 |
T |
|
| Q |
237 |
atgggaaatgcattttaaaaat |
258 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
11710568 |
atgggaaaaccattttaaaaat |
11710547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 37 - 258
Target Start/End: Original strand, 11618009 - 11618230
Alignment:
| Q |
37 |
attgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgtgcttttgaatgctccactagcaaagt |
136 |
Q |
| |
|
|||||||| |||||||||| ||| | | |||| | |||||| | ||||| ||||||||||||||| | || ||||||| || |||||||||||||| | |
|
|
| T |
11618009 |
attgcattgataattcttttccgcacaattggactagcaacactcgcatcattggtggtgatagttctcactgtgctttgcaacgctccactagcaaact |
11618108 |
T |
|
| Q |
137 |
tacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtgaacatgaaagtgctaaagttatatgc |
236 |
Q |
| |
|
||||||| |||| || || ||||| ||||||| |||||||| || || || || ||||| || ||||| ||||| ||||||||| | ||| ||||||| |
|
|
| T |
11618109 |
tacaacacaagtttcaaacccaacttatggtggcgcaagatgagagattaaaggcgagttcggaggctcttgtgaatatgaaagtgttgaagctatatgc |
11618208 |
T |
|
| Q |
237 |
atgggaaatgcattttaaaaat |
258 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
11618209 |
atgggaaacacattttaaaaat |
11618230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 256
Target Start/End: Original strand, 11662825 - 11663044
Alignment:
| Q |
37 |
attgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgtgcttttgaatgctccactagcaaagt |
136 |
Q |
| |
|
||||||||||||||||||||| | || | |||| |||||||| || || ||| ||||||||| | || |||||| || ||||||||||||||| |
|
|
| T |
11662825 |
attgcattagtaattctttttggtgcaattggaccagcaacaatagcttcaatggcagtgatagttctcacgatgctttgcaacactccactagcaaagt |
11662924 |
T |
|
| Q |
137 |
tacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtgaacatgaaagtgctaaagttatatgc |
236 |
Q |
| |
|
| ||||| |||| || ||| ||||| ||||||| ||||| || || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
11662925 |
tgcaacacaagtttcagagtgaacttatggtggcacaagacgagagattgaaggctagttctgaggctcttgtgagtatgaaagtgctaaagctatatgc |
11663024 |
T |
|
| Q |
237 |
atgggaaatgcattttaaaa |
256 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
11663025 |
atgggaaacacattttaaaa |
11663044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 263
Target Start/End: Complemental strand, 11674192 - 11674018
Alignment:
| Q |
89 |
tggtggtgatagttttgaccgtgcttttgaatgctccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaa |
188 |
Q |
| |
|
|||| |||||| || | |||||||||| || |||| ||||||||| ||||||| |||| || || ||||| ||||||| |||||||| || || || |
|
|
| T |
11674192 |
tggtagtgataattctcaccgtgctttgcaacactccgctagcaaagctacaacacaagtttcagagcaaactaatggtggcgcaagatgagagattaaa |
11674093 |
T |
|
| Q |
189 |
agctagttctgaagctctggtgaacatgaaagtgctaaagttatatgcatgggaaatgcattttaaaaattccat |
263 |
Q |
| |
|
||| |||||||| ||||| ||||| ||||||||| | ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
11674092 |
agcgagttctgaggctcttgtgaatatgaaagtgttgaagctatatgcatgggaaacccattttaaaaattccat |
11674018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 257
Target Start/End: Original strand, 12361 - 12581
Alignment:
| Q |
37 |
attgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgtgcttttgaatgctccactagcaaagt |
136 |
Q |
| |
|
|||||||||||||| ||||| ||| | | |||| | |||||| | ||||| ||| |||||||||| | |||||||||| |||||||||||| |||||| |
|
|
| T |
12361 |
attgcattagtaatccttttccgcacaattggactagcaacactagcatcaatggcggtgatagttctcaccgtgctttgcaatgctccactatcaaagt |
12460 |
T |
|
| Q |
137 |
tacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtgaacatgaaagtgctaaagttatatgc |
236 |
Q |
| |
|
||||| | || | || ||||||||| || |||| ||||| || || || || | ||||||||||||||| ||| ||||||||| | || ||||||| |
|
|
| T |
12461 |
tacaatacaaatttcagagtaaacttatgttggcacaagacgagagattaaaggttagttctgaagctctcacgaatatgaaagtgttgaaactatatgc |
12560 |
T |
|
| Q |
237 |
atgggaaatgcattttaaaaa |
257 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
12561 |
atgggaaaaccattttaaaaa |
12581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 44811503 - 44811617
Alignment:
| Q |
130 |
gcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtgaacatgaaagtgctaaagt |
229 |
Q |
| |
|
|||||||||||||| |||| || ||| |||||| |||| || |||||||| || ||||| |||| |||||| ||||| ||||| ||||| ||||| |||| |
|
|
| T |
44811503 |
gcaaagttacaacacaagtttcaaagcaaacttatggtagcacaagatgagagattgaaggctacttctgaggctcttgtgaatatgaaggtgctgaagt |
44811602 |
T |
|
| Q |
230 |
tatatgcatgggaaa |
244 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44811603 |
tatatgcatgggaaa |
44811617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 8995 - 8951
Alignment:
| Q |
214 |
atgaaagtgctaaagttatatgcatgggaaatgcattttaaaaat |
258 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
8995 |
atgaaagtgttgaagttatatgcatgggaaacacattttaaaaat |
8951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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