View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8890_low_46 (Length: 366)
Name: NF8890_low_46
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_46 |
 | |
|
| [»] scaffold0046 (1 HSPs) |
| | |
|
| [»] scaffold0023 (1 HSPs) |
| | |
|
| [»] scaffold0239 (1 HSPs) |
| | |
|
| [»] scaffold0013 (2 HSPs) |
| | |
|
| [»] scaffold2044 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 180 - 318
Target Start/End: Complemental strand, 22688613 - 22688475
Alignment:
| Q |
180 |
ggctcatattttaaagccagaggtaagttgatgtagttgtctcttcaaatcatcgagtttttcttcgagaaccttactattgctagtaagaatggttatt |
279 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22688613 |
ggctcatattttaaagccagaggtgagttgatgtagttgtctcttcaaatcatcgagtttttcttcgagaaccttactattgctagtaagaacggttatt |
22688514 |
T |
|
| Q |
280 |
tcttgctgagacaacttcgattctttgacccttttgatg |
318 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22688513 |
tcttgctgagacagcttcgattctttgacccttttgatg |
22688475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 22688792 - 22688691
Alignment:
| Q |
1 |
tcattaatttttcttgagaatttgttccatcaaatgaataattagtaaaataaagtgttactcgaagaaaatatgtcatttacatatagacggtttttat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
22688792 |
tcattaatttttcttgagaatttgttccatcaaatgaataattagtaaaataaagtgttactcgaagaaaatatgccatttacatataaacggtttttat |
22688693 |
T |
|
| Q |
101 |
ac |
102 |
Q |
| |
|
|| |
|
|
| T |
22688692 |
ac |
22688691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 180 - 318
Target Start/End: Original strand, 21299984 - 21300122
Alignment:
| Q |
180 |
ggctcatattttaaagccagaggtaagttgatgtagttgtctcttcaaatcatcgagtttttcttcgagaaccttactattgctagtaagaatggttatt |
279 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | |||| ||||||| |||||||||||||||||||||||||| | ||| |||||||| ||||||| |
|
|
| T |
21299984 |
ggctcatattttaaagccagaggtgagttgatacaattgtttcttcaagtcatcgagtttttcttcgagaaccttgccattatcagtaagaacggttatt |
21300083 |
T |
|
| Q |
280 |
tcttgctgagacaacttcgattctttgacccttttgatg |
318 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
21300084 |
tcttgctgagacagcttcgattctttgacctttttgatg |
21300122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 21299809 - 21299872
Alignment:
| Q |
8 |
tttttcttgagaatttgttccatcaaatgaataattagtaaa-ataaagtgttactcgaagaaaa |
71 |
Q |
| |
|
|||||||||| |||||||||||||||| || ||| ||||||| |||||||||||||| ||||||| |
|
|
| T |
21299809 |
tttttcttga-aatttgttccatcaaaggagtaactagtaaagataaagtgttactcaaagaaaa |
21299872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 180 - 318
Target Start/End: Original strand, 12493687 - 12493825
Alignment:
| Q |
180 |
ggctcatattttaaagccagaggtaagttgatgtagttgtctcttcaaatcatcgagtttttcttcgagaaccttactattgctagtaagaatggttatt |
279 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | |||| |||| || |||| ||||||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
12493687 |
ggctcatattttaaagccagaggtgagttgatgcaattgtttctttaagtcattgagtttttcttcgagaaccttgccattatcagtaagaatggttatt |
12493786 |
T |
|
| Q |
280 |
tcttgctgagacaacttcgattctttgacccttttgatg |
318 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
12493787 |
tcttgctgagacagcttcgattctttgacctttttgatg |
12493825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 318
Target Start/End: Complemental strand, 12849140 - 12849002
Alignment:
| Q |
180 |
ggctcatattttaaagccagaggtaagttgatgtagttgtctcttcaaatcatcgagtttttcttcgagaaccttactattgctagtaagaatggttatt |
279 |
Q |
| |
|
||||||||||||||||||||| || ||||| || |||||| |||| || ||| | ||||||||||| |||||||| | |||| |||||| ||| |||| |
|
|
| T |
12849140 |
ggctcatattttaaagccagaagtgagttggtgcagttgtttctttaagtcaccaagtttttcttcaagaaccttgccattgtccgtaagagtggctatt |
12849041 |
T |
|
| Q |
280 |
tcttgctgagacaacttcgattctttgacccttttgatg |
318 |
Q |
| |
|
||||||||||| | ||| |||||||||||| |||||||| |
|
|
| T |
12849040 |
tcttgctgagaaagcttagattctttgacctttttgatg |
12849002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 12493510 - 12493608
Alignment:
| Q |
8 |
tttttcttgagaatttgttccatcaaatgaataattagtaaaa-taaagtgttactcgaagaaaa----tatgtcatttacatatagacggtttttatac |
102 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||| |||||||| ||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
12493510 |
tttttcttga-aatttgttccataaaatgagtaactagtaaaaataaagtgttactcaaagaaaaaatatatgtcatttaaatataaacggtttttatac |
12493608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 13035091 - 13035162
Alignment:
| Q |
180 |
ggctcatattttaaagccagaggtaagttgatgtagttgtctcttcaaatcatcgagtttttcttcgagaac |
251 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| |||| || ||| | |||||| |||||||||| |
|
|
| T |
13035091 |
ggctcatattttaaagccagaggtgagttgatgcagttgtttctttaagtcaccaagttttccttcgagaac |
13035162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 307
Target Start/End: Original strand, 58903 - 59028
Alignment:
| Q |
182 |
ctcatattttaaagccagaggtaagttgatgtagttgtctcttcaaatcatcgagtttttcttcgagaaccttactattgctagtaagaatggttatttc |
281 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| | |||| | ||||| ||||| |||||||||||||||||||| | ||| |||||||| || |||||| |
|
|
| T |
58903 |
ctcatattttgaagccagaggtgagttgatacaattgttttttcaagtcatcaagtttttcttcgagaaccttgccattatcagtaagaacggctatttc |
59002 |
T |
|
| Q |
282 |
ttgctgagacaacttcgattctttga |
307 |
Q |
| |
|
||||||||| | || |||||||||| |
|
|
| T |
59003 |
ttgctgagatgattttgattctttga |
59028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 290
Target Start/End: Original strand, 9141 - 9251
Alignment:
| Q |
180 |
ggctcatattttaaagccagaggtaagttgatgtagttgtctcttcaaatcatcgagtttttcttcgagaaccttactattgctagtaagaatggttatt |
279 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||| | |||| | ||||| |||| |||||||||||||||||||| | ||| | |||||||| | |||| |
|
|
| T |
9141 |
ggctcatattttgaagctagaggtgagttgatacaattgttttttcaagtcattaagtttttcttcgagaaccttgccattaccagtaagaacgactatt |
9240 |
T |
|
| Q |
280 |
tcttgctgaga |
290 |
Q |
| |
|
||||||||||| |
|
|
| T |
9241 |
tcttgctgaga |
9251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0239 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0239
Description:
Target: scaffold0239; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 23845 - 23780
Alignment:
| Q |
180 |
ggctcatattttaaagccagaggtaagttgatgtagttgtctcttcaaatcatcgagtttttcttc |
245 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| || | |||||| | ||||||||||| |
|
|
| T |
23845 |
ggctcatattttaaagccagaggtgagttgatgcagttgtttccttaaatcaccaagtttttcttc |
23780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 115565 - 115639
Alignment:
| Q |
235 |
agtttttcttcgagaaccttactattgctagtaagaatggttatttcttgctgagacaacttcgattctttgacc |
309 |
Q |
| |
|
||||||||||||||| |||| | |||| ||||||||| | ||||||||| || |||||||| |||||||||||| |
|
|
| T |
115565 |
agtttttcttcgagagccttgccattgtcagtaagaatagctatttcttgttgggacaacttggattctttgacc |
115639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 123459 - 123547
Alignment:
| Q |
221 |
tcttcaaatcatcgagtttttcttcgagaaccttactattgctagtaagaatggttatttcttgctgagacaacttcgattctttgacc |
309 |
Q |
| |
|
|||| |||||| | ||||||||||||||| |||| | |||| ||||||||| | ||| ||||| || |||||||| |||||||||||| |
|
|
| T |
123459 |
tctttaaatcaccaagtttttcttcgagagccttgccattgtgagtaagaatagctatctcttgttgggacaacttggattctttgacc |
123547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2044 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold2044
Description:
Target: scaffold2044; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 1 - 40
Alignment:
| Q |
279 |
ttcttgctgagacaacttcgattctttgacccttttgatg |
318 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
1 |
ttcttgctgagacagcttcgattctttgacctttttgatg |
40 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University