View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_50 (Length: 345)
Name: NF8890_low_50
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 24683309 - 24683641
Alignment:
| Q |
1 |
ttctcgtagcctctggggtacttatttatgcttaactcaaggagtttctactatacgcttcgggtcttaccttattacatgctgatcgaagcgctatccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24683309 |
ttctcgtagcctctggggtacttatttatgcttaactcaaggagtttctactatacgcttcgggtcttaccttatttcatgctgatcgaagcgctatccc |
24683408 |
T |
|
| Q |
101 |
ttcttatcccctctttgtatgaatctttccgtcttggtccgatcggactttattttcgaacaggtattccccttgattagctcactcnnnnnnnagctgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24683409 |
ttcttatcccctctttgtatgaatctttccgtcttggtccgatcggactttattttcgaacaggtattccccttgattagctcactctttttttagctgg |
24683508 |
T |
|
| Q |
201 |
tctgtgctttccagtgaacattctctttctagagagaacaggtgtgcaccagagctggagcaattcatggaaagcatccttatctgattaaagaacggag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24683509 |
tctgtgctttccagtgaacattctctttctagagagaacaggtgtgcaccagagctggagcaattcatggaaagcatccttatctgattaaagaacggag |
24683608 |
T |
|
| Q |
301 |
agtatcatctcctggggcctgaccctgtgatgt |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
24683609 |
agtatcatctcctggggcctgaccctgtgatgt |
24683641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 16060587 - 16060442
Alignment:
| Q |
1 |
ttctcgtagcctctggggtacttatttatgcttaactcaaggagtttctactatacgcttcgggtcttaccttattacatgctgatcgaagcgctatccc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16060587 |
ttcttgtagcctctggggtacttatttatgcttaactcaaggagtttctactatacgcttcgggtcttaccttatttcatgctgatcgaagcgctatccc |
16060488 |
T |
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| Q |
101 |
ttcttatcccctctttgtatgaatctttccgtcttggtccgatcgg |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16060487 |
ttcttatcccctctttgtatgaatctttccgtcttggtccgatcgg |
16060442 |
T |
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