View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_51 (Length: 341)
Name: NF8890_low_51
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 46225996 - 46225769
Alignment:
| Q |
1 |
cataaatcgtgaatttgatagttttctaaaggtaatatgttagggaannnnnnnactagctcatacaataggaaagaaagcattattaacatgagcatgt |
100 |
Q |
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| T |
46225996 |
cataaatcgtgaatttgatagttttctaaaggtaatatgttagggaatttttt-actagctcatacaataggaaagaaagcattattaacatgagcatgt |
46225898 |
T |
|
| Q |
101 |
tcgtaggcttttgataattaagctggaagattgcagtagttccatgtagtctccacttatcttcttgggattttcttaacctgttacaacaattggtgtg |
200 |
Q |
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| T |
46225897 |
tcgtaggcttttgataattaaactggaagattgcagtagttccatgtagtctccacttatcttcttgggattttcttaacctgttacaacaattggtgtg |
46225798 |
T |
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| Q |
201 |
ggttatcaggtgggattatattcattgat |
229 |
Q |
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| T |
46225797 |
gattatcaggtgggattatattcattgat |
46225769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 103 - 229
Target Start/End: Original strand, 24167444 - 24167569
Alignment:
| Q |
103 |
gtaggcttttgataattaagctggaagattgcagtagttccatgtagtctccacttatcttcttgggattttctta-acctgttacaacaattggtgtgg |
201 |
Q |
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| T |
24167444 |
gtaggcttttgataattaaactggaagattgcagtagcttcttgtagact--acttatcttcttaggatttttttttacttgttacaacaattggtgtgg |
24167541 |
T |
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| Q |
202 |
gttatcaggtgggattatattcattgat |
229 |
Q |
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| T |
24167542 |
attatcaggtgggattatattcattgat |
24167569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 27756591 - 27756693
Alignment:
| Q |
124 |
tggaagattgcagtagttccatgtagtctccacttatcttcttgggattttcttaacctgttacaacaattggtgtgggttatcaggtgggattatattc |
223 |
Q |
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||||||| |||| ||||| ||| ||||| ||||||||||||| ||||||| | || ||||||||||| |||||||| ||||||||| |||||||| || |
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| T |
27756591 |
tggaagactgcaatagtttcatctagtc--cacttatcttcttaggattttttcgacttgttacaacaactggtgtggattatcaggtaggattatactc |
27756688 |
T |
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| Q |
224 |
attga |
228 |
Q |
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||||| |
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| T |
27756689 |
attga |
27756693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 27756402 - 27756468
Alignment:
| Q |
55 |
actagctcatacaataggaaagaaagcattattaacatgagcatgttcgtaggcttttgataattaa |
121 |
Q |
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|||||||||||||||||| || ||||||||||||||||| |||| | ||||||||||| |||||| |
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| T |
27756402 |
actagctcatacaataggcaaagaagcattattaacatgaacatgctgttaggcttttgaaaattaa |
27756468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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