View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_54 (Length: 338)
Name: NF8890_low_54
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 1813423 - 1813112
Alignment:
| Q |
13 |
tggacatcagtctacaagttttaattagttgtttgatttaccaccttatttccttttctaaccctattgtttaagcaaaaataggtcatgattagattaa |
112 |
Q |
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| T |
1813423 |
tggacttcagtctacaagttttaattagttgtttgatttaccaccttatttccttttctaaccctattgtttaagcaaaaataggtcatgattagattaa |
1813324 |
T |
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| Q |
113 |
gttcattccttcatagcctttaataatatgattaattcccgaagacccaaaccactccgaacgcctcaattccaggacatgaagttcaacacaaagcggg |
212 |
Q |
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| T |
1813323 |
gttcattccttcatagcctttaataatatgattaattcccgaagacccaaacaactccgaacgcctcaattccaggacatgaagttcaacacaaagcggg |
1813224 |
T |
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| Q |
213 |
acttcagtgtgatcagggtctgtaacattggtcattcacatgatagttttttataaaacagtaattaaattttaaggagttagagttaaatgcagtttcc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1813223 |
acttcagtgtgatcagggtctgtaacattggtcattcacatgatagttttttataaaacagtaattaaattttaaggagttagagttaaatgcagtttcc |
1813124 |
T |
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| Q |
313 |
ccctggtctgtg |
324 |
Q |
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|||||||||||| |
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| T |
1813123 |
ccctggtctgtg |
1813112 |
T |
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