View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8890_low_6 (Length: 703)

Name: NF8890_low_6
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8890_low_6
NF8890_low_6
[»] chr7 (3 HSPs)
chr7 (16-412)||(37372905-37373309)
chr7 (404-548)||(37372290-37372435)
chr7 (567-696)||(37372175-37372304)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 37373309 - 37372905
Alignment:
Q  16 acatcaatgttgtagatctcgaagtattgatattttggtcacatttgtcacttttgtggctattgtgttattgtatgatattaattttgatgttgtgagc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37373309 acatcaatgttgtagatctcgaagtattgatattttggtcacatttgtcacttttgtggctattgtgttattgtatgatattaattttgatgttgtgagc 37373210  T
Q  116 ttatctatggaccattcttttcatgtcaacaaattcttcataataaataacattttcaaagaaaatagtggaaataaaattcccttgaaggtggaaataa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37373209 ttatctatggaccattcttttcatgtcaacaaattcttcataataaataacattttcaaagaaaatagtggaaataaaattcccttgaaggtggaaataa 37373110  T
Q  216 atctacgtgtaaactgttgataaacatttctcttaaagtaacttatcagaataatatggagtaaatgttaatcaagcatcnnnnnnnaaaaagcatttag 315  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||        ||||||||| |||    
T  37373109 atctacgtgtaaactgttgataaacatttctcttaatgtaactcatcagaataatatggagtaaatgttaatcaagcatatttttttaaaaagcatctag 37373010  T
Q  316 gaatacagatttaatcaaaagttatttcc---------tctaataaacttnnnnnnnnntcctttatgtttagtttttctatccatgccaacaatcaatt 406  Q
    |||||||||||||||||||||||||||||         | ||||||||||         |||||||||||||||||||||||||||||||||||||||||    
T  37373009 gaatacagatttaatcaaaagttatttccgataataaatttaataaactt-aaaaaaaatcctttatgtttagtttttctatccatgccaacaatcaatt 37372911  T
Q  407 atcaaa 412  Q
    ||||||    
T  37372910 atcaaa 37372905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 404 - 548
Target Start/End: Complemental strand, 37372435 - 37372290
Alignment:
Q  404 attatcaaatttcattctattaagtgagattggttacatgaatcaaatgacactataatattatgtcatatatcacatcattctcgaactcatcaatctc 503  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37372435 attatcaaattttattctattaagtgagattggttacatgaatcaaataacactataatattatgtcatatatcacatcactctcgaactcatcaatctc 37372336  T
Q  504 taaaa-ttttataatattttctcttgtagttttcctaaatctccac 548  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||    
T  37372335 taaaacttttataataatttctcttgtagttttcctaaatctccac 37372290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 567 - 696
Target Start/End: Complemental strand, 37372304 - 37372175
Alignment:
Q  567 ttcctaaatctccacttgccactgttaatttgactaccatccatctcatttatttccttaatgcaaaatttataggttttgtatgtacataacattattt 666  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37372304 ttcctaaatctccacttgccactagtaatttgacaaccatccatctcatttatttccttaatgcaaaatttataggtcttgtatgtacataacattattt 37372205  T
Q  667 tggtgcggtcttgagtgatgtccatctcat 696  Q
    |||||||||||||||||| |||||| ||||    
T  37372204 tggtgcggtcttgagtgaggtccatgtcat 37372175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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