View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_62 (Length: 312)
Name: NF8890_low_62
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 22517395 - 22517098
Alignment:
| Q |
11 |
tggacatcataatggaggcataactttttgggatgcatcaggtcccttcttcatcacagttttgcaattaaagcagcacagtaaaaatgatcattcttta |
110 |
Q |
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| T |
22517395 |
tggacaccataatggaggcataactttttgggatgcatcaggtcccttcttcatcacaggtttgcaattaaagcagcagagtaaaaatgatcattcttta |
22517296 |
T |
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| Q |
111 |
agtggtgttcccttgacagtattatattttgacatcaactttcttcgccttgtttctggtgaccaaagtggaatgatcttggatggacagtgtgaaccaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22517295 |
agtggtgttcccttgacagtattatattttgacatcaactctcttcgccttgtttctggtgaccaaagtggaatgatcttggatggacagtgtgaaccaa |
22517196 |
T |
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| Q |
211 |
ttacaagaattttgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgcgacgtgaggtgtggtgtttgtggctctgtgctc |
308 |
Q |
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| T |
22517195 |
ttacaagaattttgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgcgacgtgaggtgcggtgtttgtggctctgtgctc |
22517098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 223 - 308
Target Start/End: Original strand, 416635 - 416720
Alignment:
| Q |
223 |
tgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgcgacgtgaggtgtggtgtttgtggctctgtgctc |
308 |
Q |
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| T |
416635 |
tgcaagacgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgtgacgtgaggtgtggtgtttgtgggcctgtgctc |
416720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 405464 - 405539
Alignment:
| Q |
223 |
tgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgcgacgtgaggtgtggtgtttgtgg |
298 |
Q |
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| T |
405464 |
tgcaagatgtgatagcaggttcatataattttgtgtgtgctcacggaagtcgtgatgtgaggtgtggtgtttgtgg |
405539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 399897 - 399821
Alignment:
| Q |
223 |
tgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgcga-cgtgaggtgtggtgtttgtgg |
298 |
Q |
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| T |
399897 |
tgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgtgattgtaaggtgtgctgtttgtgg |
399821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 9710432 - 9710355
Alignment:
| Q |
11 |
tggacatcataatggaggcataactttttgggatgcatcaggtcccttcttcatcacagttttgcaattaaagcagca |
88 |
Q |
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| T |
9710432 |
tggacaccataatggagccataacattttgggatgcatcatgtcccttcttcatcccagttttgcaattaaagcagca |
9710355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 9710032 - 9709941
Alignment:
| Q |
94 |
aaaatgatcattctttaagtggtgttcccttgacagtattatattttgacatcaactttcttcgccttgtttctggtgaccaaagtggaatg |
185 |
Q |
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|||||||||| |||||||||||||| || ||||||| |||||||||||||||||| | ||||| ||| |||||||||||||| ||||||||| |
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| T |
9710032 |
aaaatgatcaatctttaagtggtgtaccattgacagaattatattttgacatcaagtctcttctcctggtttctggtgaccagagtggaatg |
9709941 |
T |
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