View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8890_low_63 (Length: 302)

Name: NF8890_low_63
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8890_low_63
NF8890_low_63
[»] chr4 (1 HSPs)
chr4 (5-302)||(51000790-51001075)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 302
Target Start/End: Original strand, 51000790 - 51001075
Alignment:
Q  5 ggataaaatagcaattaacaacgtaagaaccatgctgaatattctttgtaaaaatt-caatgatataaa-cccttgatcctaaacacgggattacaaaaa 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  51000790 ggataaaatagcaattaacaacgtaagaaccatgctgaatattctttgtaaaaattacaatgatataaaacccttgatcctaaacacgggattacaaaaa 51000889  T
Q  103 ctcactcatcaagcatccgataaactctcctccgaaagtttgcattgtcctcaccacgagcatagaagcaatgcaagactggaacactaccatcctacat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  51000890 ctcactcatcaagcatccgataaactctcctccgaaagtttgcattgtcctcaccacgagcatagaagcaatgcaagactgcaacactaccatcctacat 51000989  T
Q  203 tgaacaatagaaccaataagttaggcaactcatgagaccaaagtagaatgcaaactaagggagaaaaatggcaccagacaacatacagatattaaaaaca 302  Q
    |||||||||||||||||||              |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51000990 tgaacaatagaaccaataa--------------gagaccaaagtaaaatgcaaattaagggagaaaaatggcaccagacaacatacagatattaaaaaca 51001075  T

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