View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_7 (Length: 679)
Name: NF8890_low_7
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 93 - 614
Target Start/End: Complemental strand, 9660183 - 9659667
Alignment:
| Q |
93 |
tcttttttgagtgttctttttaacacagaatttggattggtattcttaactggtgtggtgtgcaagggccagttcaacaaagtagaaatcgaaaaggaag |
192 |
Q |
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| T |
9660183 |
tcttttttgagtgttctttttaacacagaatttggattggtattcttaaccggtgtggtgtgcaagggccagtgcaacaaagtagaaatcgaaaaggaag |
9660084 |
T |
|
| Q |
193 |
aataaatcgaaaaggaaacgtttatagtgtggatggctatggtttggtgtaataacttgttgcttgtattgataatcatgtatgaaattttagtttttag |
292 |
Q |
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| T |
9660083 |
aataaatcgaaaaggaaacgtttatagtgtggatgactacggtttggtgtaataacttgttgcttgtattgatagccatgtatg-aattttagtttttag |
9659985 |
T |
|
| Q |
293 |
tctcagaactatgtagtgggttcgagtatcccttttactcttattaataccattttgcttatttaaaatattggtaaatactaattatttctccatgatt |
392 |
Q |
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| T |
9659984 |
tctcagaacaatgtagtgggttcgagtatcccttttactcttattaataccattttgctta-ttaaaatattggtaactactaattatttcaccatgatt |
9659886 |
T |
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| Q |
393 |
taactttagcaaataggtacttagtgataacaatttatattcacaatctcaacttgtatcaatataattttatttccacttttctctcttaaatgctaaa |
492 |
Q |
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| T |
9659885 |
taactttagcaaataggtatttagtgataacaatttcaattcacaatctcaacttctatcaatataattttatttccacttttctctcttaaatgct-aa |
9659787 |
T |
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| Q |
493 |
tatcaatattttgctgcatcttctattatgaatattgatat--tatgtatctgtgtatgcatgcataccaagcgatcaatgtataaaggtatctcatgct |
590 |
Q |
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| T |
9659786 |
tatcaatattttgctgcatcttctattatgaatattgatattatatgtatccgtgt----atgcataccaagcgatcaatgtataaaggtaactcatgct |
9659691 |
T |
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| Q |
591 |
gtcaataaaaatcaaccctttagt |
614 |
Q |
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| T |
9659690 |
gtcaataaaaatcaaccctttagt |
9659667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 9661119 - 9661033
Alignment:
| Q |
12 |
ggacatcagaaaaaaggaaataggctcctcaaacttagaatcactgattagaaatggatagttttaattgtaatgcacaattctttt |
98 |
Q |
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| T |
9661119 |
ggacattagaaaaaaggaaataggctcctcaaacttagaatcactgattcgaaatggatagttttaattgtaatgcacaattctttt |
9661033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 9649666 - 9649609
Alignment:
| Q |
41 |
caaacttagaatcactgattagaaatggatagttttaattgtaatgcacaattctttt |
98 |
Q |
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| T |
9649666 |
caaacttagaatcaatgattctaaatggatagttttaattttaatgcataattctttt |
9649609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 35999977 - 36000025
Alignment:
| Q |
458 |
aattttatttccacttttctctcttaaatgctaaatatcaatattttgc |
506 |
Q |
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| T |
35999977 |
aattttacttccacttttctctcttcggtgcttaatatcaatattttgc |
36000025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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