View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_70 (Length: 292)
Name: NF8890_low_70
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 42434860 - 42435135
Alignment:
| Q |
1 |
ataggatgaaagagagaagaaaacaatggatgtgtgaatgatcgacatgataaatgatgcagagaaataagagaacaatggaagagagaatgatgaagaa |
100 |
Q |
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| T |
42434860 |
ataggatgaaagagagaagaaaacaatggaggtgtcaaggattgatatgataaatgatgcagagaaataagcgaacaatggaagagagaatgatgaagaa |
42434959 |
T |
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| Q |
101 |
agatgtggtgcggcaacaatgtatttatttagggttacagaaacaacttaggctatttaggcctactgtatgggcttaggttaaccgtagtccnnnnnnn |
200 |
Q |
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| T |
42434960 |
agatgtggtgcggcagcaatgtatttatttagggttacagaaataacttaggctatttaggcctactgtatgggcttaggttaaccgtagtccaaaaaaa |
42435059 |
T |
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| Q |
201 |
ngtaagttgtatagtggaaattttgcaatatacccctacatatgtactttcacccgtacaattaaaaatacaaatt |
276 |
Q |
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| T |
42435060 |
agtaagttgtatagtggaaattttgtgatatacccctacatatgtactttcacccgcacaattaaaaataaaaatt |
42435135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28294001 - 28293759
Alignment:
| Q |
1 |
ataggatg-aaagagagaagaaaacaatggatgtgtgaatgatcgacatgataaatgatgcagaga--aataagagaacaatggaagagagaatgatgaa |
97 |
Q |
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| T |
28294001 |
ataggatgcaaagaaagaagaaaacaatggaggtgtgaaggatcgacataataaatgatgcagagagaaagaagagaacaatggaagagagattgatgaa |
28293902 |
T |
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| Q |
98 |
gaaagatgtggtgcggcaacaatgtatttatttagggttacagaaacaacttaggctatttaggcctactgtatgggcttaggttaaccgtagtccnnnn |
197 |
Q |
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| T |
28293901 |
gaaagatgtggtgcggcaggaatgtatttatttagggttacagaaacaacataggctatttgggcccactgtatgggcttagattaaccgaagttaaaaa |
28293802 |
T |
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| Q |
198 |
nnnngtaagttgtatagtggaaattttgcaatatacccctaca |
240 |
Q |
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| T |
28293801 |
aaaagtatgttgtatagttgaaattttacgatatacccctaca |
28293759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 8390218 - 8390342
Alignment:
| Q |
61 |
agagaaataagagaacaatggaagagagaatgatgaagaa---agatgtggtgcggcaacaatgtatttatttagggttacagaaacaacttaggctatt |
157 |
Q |
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| T |
8390218 |
agagaaagaagagaacaatggaatggagaaagatgaagaacgaagatgtgttgcggcggcatcatatttatttagggttaccgaaataacttaagctatt |
8390317 |
T |
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| Q |
158 |
taggcctactgtatgggcttaggtt |
182 |
Q |
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| T |
8390318 |
tgggcctaatgtatggacttaggtt |
8390342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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