View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8890_low_73 (Length: 283)

Name: NF8890_low_73
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8890_low_73
NF8890_low_73
[»] scaffold0825 (1 HSPs)
scaffold0825 (1-47)||(1979-2025)
[»] scaffold0126 (1 HSPs)
scaffold0126 (1-47)||(5673-5719)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-47)||(59139-59185)
[»] chr8 (21 HSPs)
chr8 (1-47)||(43111882-43111928)
chr8 (1-47)||(20459848-20459894)
chr8 (153-199)||(44475899-44475945)
chr8 (153-199)||(44479161-44479207)
chr8 (2-47)||(21861740-21861785)
chr8 (3-47)||(32949516-32949560)
chr8 (4-47)||(20454236-20454279)
chr8 (1-47)||(362317-362363)
chr8 (153-199)||(8729486-8729532)
chr8 (1-47)||(19881699-19881745)
chr8 (1-47)||(44431464-44431510)
chr8 (2-47)||(15004887-15004932)
chr8 (2-39)||(21415680-21415717)
chr8 (2-41)||(363593-363632)
chr8 (1-39)||(17614513-17614551)
chr8 (153-199)||(20453897-20453943)
chr8 (153-199)||(20459519-20459565)
chr8 (1-40)||(24708178-24708217)
chr8 (1-46)||(17272834-17272879)
chr8 (153-199)||(21862071-21862117)
chr8 (1-35)||(38186195-38186229)
[»] chr7 (33 HSPs)
chr7 (1-47)||(13850134-13850180)
chr7 (2-47)||(16573063-16573108)
chr7 (2-47)||(16592554-16592599)
chr7 (153-199)||(146750-146796)
chr7 (153-199)||(10897679-10897725)
chr7 (153-199)||(14420987-14421033)
chr7 (2-46)||(711078-711122)
chr7 (153-199)||(11302463-11302509)
chr7 (153-199)||(11660567-11660613)
chr7 (153-199)||(13255215-13255261)
chr7 (1-47)||(13255403-13255449)
chr7 (1-47)||(13407713-13407759)
chr7 (153-199)||(15166406-15166452)
chr7 (2-47)||(11660737-11660782)
chr7 (2-47)||(21735569-21735614)
chr7 (153-197)||(18606590-18606634)
chr7 (153-197)||(18871549-18871593)
chr7 (153-197)||(29795415-29795459)
chr7 (153-197)||(29799234-29799278)
chr7 (3-47)||(48743217-48743261)
chr7 (153-194)||(48742929-48742970)
chr7 (153-197)||(14565340-14565384)
chr7 (2-46)||(16458881-16458925)
chr7 (153-197)||(23666324-23666368)
chr7 (1-40)||(13733976-13734015)
chr7 (153-196)||(16572857-16572900)
chr7 (153-196)||(16592762-16592805)
chr7 (1-47)||(13865451-13865497)
chr7 (153-187)||(16007681-16007715)
chr7 (153-194)||(16109755-16109796)
chr7 (153-194)||(29003578-29003619)
chr7 (153-194)||(34956892-34956933)
chr7 (1-46)||(47976089-47976134)
[»] chr4 (21 HSPs)
chr4 (1-47)||(27027520-27027566)
chr4 (2-47)||(13877680-13877725)
chr4 (1-46)||(15242632-15242677)
chr4 (2-43)||(20899816-20899857)
chr4 (2-47)||(33684956-33685001)
chr4 (153-199)||(15989482-15989528)
chr4 (1-43)||(15989734-15989776)
chr4 (153-199)||(18211875-18211921)
chr4 (1-47)||(18221076-18221122)
chr4 (153-199)||(24048132-24048178)
chr4 (6-47)||(13881339-13881380)
chr4 (153-197)||(15533471-15533515)
chr4 (1-41)||(56116319-56116359)
chr4 (3-47)||(24047926-24047970)
chr4 (153-197)||(36037204-36037248)
chr4 (153-197)||(49548865-49548909)
chr4 (1-40)||(15280532-15280571)
chr4 (163-198)||(17142573-17142608)
chr4 (153-194)||(4832020-4832061)
chr4 (153-194)||(4835315-4835356)
chr4 (153-198)||(33685136-33685181)
[»] chr3 (23 HSPs)
chr3 (1-47)||(179875-179921)
chr3 (1-47)||(6806153-6806199)
chr3 (153-199)||(20249682-20249728)
chr3 (153-199)||(29545700-29545746)
chr3 (1-47)||(6818875-6818921)
chr3 (153-199)||(10834723-10834769)
chr3 (153-199)||(18899717-18899763)
chr3 (153-199)||(38312669-38312715)
chr3 (2-47)||(1989457-1989502)
chr3 (153-197)||(3802222-3802266)
chr3 (153-197)||(9532510-9532554)
chr3 (153-197)||(12304426-12304470)
chr3 (153-197)||(14764578-14764622)
chr3 (1-41)||(17211117-17211157)
chr3 (153-197)||(23372326-23372370)
chr3 (153-197)||(51299785-51299829)
chr3 (1-39)||(10990087-10990125)
chr3 (1-39)||(52339216-52339254)
chr3 (153-197)||(54519849-54519893)
chr3 (4-47)||(10834559-10834602)
chr3 (153-199)||(1989817-1989863)
chr3 (153-194)||(13026913-13026954)
chr3 (153-194)||(17548794-17548835)
[»] chr1 (17 HSPs)
chr1 (1-47)||(28204796-28204842)
chr1 (153-199)||(16371125-16371171)
chr1 (1-47)||(21181609-21181655)
chr1 (1-47)||(16400585-16400631)
chr1 (153-199)||(19209251-19209297)
chr1 (153-199)||(20439029-20439075)
chr1 (1-43)||(20900995-20901037)
chr1 (153-199)||(28311848-28311894)
chr1 (1-41)||(293761-293801)
chr1 (1-40)||(22900739-22900778)
chr1 (1-43)||(18270177-18270219)
chr1 (1-43)||(18274831-18274873)
chr1 (2-47)||(19209397-19209443)
chr1 (1-35)||(28312069-28312103)
chr1 (1-40)||(37358182-37358221)
chr1 (153-194)||(13529130-13529171)
chr1 (153-194)||(29534179-29534220)
[»] scaffold1098 (1 HSPs)
scaffold1098 (3-46)||(1039-1082)
[»] scaffold0026 (3 HSPs)
scaffold0026 (3-46)||(23855-23898)
scaffold0026 (4-46)||(20777-20819)
scaffold0026 (153-199)||(109801-109847)
[»] scaffold0635 (1 HSPs)
scaffold0635 (1-47)||(6697-6743)
[»] scaffold0413 (1 HSPs)
scaffold0413 (1-47)||(10542-10588)
[»] scaffold0151 (2 HSPs)
scaffold0151 (1-47)||(2094-2140)
scaffold0151 (1-47)||(8938-8984)
[»] scaffold0089 (1 HSPs)
scaffold0089 (153-199)||(1556-1602)
[»] chr6 (13 HSPs)
chr6 (1-47)||(23352105-23352151)
chr6 (153-199)||(221390-221436)
chr6 (1-47)||(13763932-13763978)
chr6 (153-199)||(23351756-23351802)
chr6 (153-199)||(24266443-24266489)
chr6 (153-199)||(28290727-28290773)
chr6 (153-197)||(4476048-4476092)
chr6 (153-197)||(12941473-12941517)
chr6 (153-199)||(13763615-13763661)
chr6 (3-40)||(221615-221652)
chr6 (11-47)||(24266649-24266685)
chr6 (4-47)||(29848597-29848640)
chr6 (153-194)||(29848935-29848976)
[»] chr5 (24 HSPs)
chr5 (153-199)||(19510662-19510708)
chr5 (1-47)||(24277743-24277789)
chr5 (1-47)||(24384424-24384470)
chr5 (153-199)||(37599791-37599837)
chr5 (153-199)||(22358482-22358528)
chr5 (153-199)||(42959715-42959761)
chr5 (153-197)||(23113185-23113229)
chr5 (153-197)||(38146201-38146245)
chr5 (153-197)||(41878434-41878478)
chr5 (1-40)||(16256460-16256499)
chr5 (1-40)||(16260054-16260093)
chr5 (1-40)||(22590218-22590257)
chr5 (1-40)||(22593773-22593812)
chr5 (1-40)||(22597328-22597367)
chr5 (153-199)||(22469506-22469552)
chr5 (1-47)||(22469750-22469796)
chr5 (153-199)||(22749361-22749407)
chr5 (153-199)||(24277928-24277974)
chr5 (153-199)||(24384239-24384285)
chr5 (153-197)||(9775103-9775147)
chr5 (1-40)||(26361533-26361572)
chr5 (153-194)||(10816060-10816101)
chr5 (153-194)||(23538059-23538100)
chr5 (3-43)||(22358089-22358129)
[»] chr2 (16 HSPs)
chr2 (153-199)||(6481984-6482030)
chr2 (153-199)||(6485451-6485497)
chr2 (1-47)||(10040327-10040373)
chr2 (1-47)||(23374856-23374902)
chr2 (1-47)||(24275762-24275808)
chr2 (155-199)||(9240917-9240961)
chr2 (153-197)||(10686072-10686116)
chr2 (153-197)||(20260509-20260553)
chr2 (1-41)||(28352495-28352535)
chr2 (153-196)||(19663274-19663317)
chr2 (2-47)||(22109411-22109456)
chr2 (153-194)||(26895971-26896012)
chr2 (1-41)||(28348670-28348710)
chr2 (153-196)||(6261996-6262039)
chr2 (153-194)||(6478622-6478663)
chr2 (153-194)||(22702738-22702779)
[»] scaffold0500 (1 HSPs)
scaffold0500 (2-47)||(11865-11910)
[»] scaffold0381 (1 HSPs)
scaffold0381 (2-47)||(14124-14169)
[»] scaffold0016 (1 HSPs)
scaffold0016 (3-47)||(120009-120053)
[»] scaffold0447 (1 HSPs)
scaffold0447 (4-47)||(13886-13929)
[»] scaffold0383 (1 HSPs)
scaffold0383 (4-47)||(11881-11924)
[»] scaffold0338 (2 HSPs)
scaffold0338 (4-47)||(4120-4163)
scaffold0338 (153-199)||(4445-4491)
[»] scaffold1276 (1 HSPs)
scaffold1276 (1-47)||(105-151)
[»] scaffold0337 (1 HSPs)
scaffold0337 (153-199)||(10607-10653)
[»] scaffold0216 (2 HSPs)
scaffold0216 (153-199)||(20966-21012)
scaffold0216 (1-47)||(21223-21269)
[»] scaffold0124 (1 HSPs)
scaffold0124 (153-199)||(37409-37455)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-47)||(137456-137502)
[»] scaffold0586 (1 HSPs)
scaffold0586 (2-39)||(1484-1521)
[»] scaffold1427 (1 HSPs)
scaffold1427 (153-197)||(431-475)
[»] scaffold0544 (1 HSPs)
scaffold0544 (153-197)||(3299-3343)
[»] scaffold0034 (2 HSPs)
scaffold0034 (4-47)||(35054-35097)
scaffold0034 (153-198)||(35279-35324)
[»] scaffold0607 (2 HSPs)
scaffold0607 (153-199)||(2404-2450)
scaffold0607 (14-47)||(2709-2742)
[»] scaffold0109 (1 HSPs)
scaffold0109 (3-41)||(1988-2026)
[»] scaffold0042 (2 HSPs)
scaffold0042 (1-47)||(50670-50716)
scaffold0042 (153-199)||(50452-50498)
[»] scaffold0012 (2 HSPs)
scaffold0012 (153-199)||(223890-223936)
scaffold0012 (3-35)||(223725-223757)
[»] scaffold0107 (1 HSPs)
scaffold0107 (1-41)||(2757-2797)
[»] scaffold0058 (1 HSPs)
scaffold0058 (12-47)||(40360-40395)
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-44)||(6223-6265)
[»] scaffold0021 (2 HSPs)
scaffold0021 (1-40)||(134360-134399)
scaffold0021 (153-194)||(145780-145821)
[»] scaffold0970 (1 HSPs)
scaffold0970 (153-194)||(3752-3793)
[»] scaffold0188 (1 HSPs)
scaffold0188 (153-194)||(901-942)
[»] scaffold0117 (1 HSPs)
scaffold0117 (153-194)||(41552-41593)
[»] scaffold0860 (1 HSPs)
scaffold0860 (2-30)||(142-170)
[»] scaffold0609 (1 HSPs)
scaffold0609 (2-30)||(4307-4335)


Alignment Details
Target: scaffold0825 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0825
Description:

Target: scaffold0825; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1979 - 2025
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1979 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 2025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5719 - 5673
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  5719 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 5673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 59185 - 59139
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  59185 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 59139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43111928 - 43111882
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  43111928 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 43111882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20459894 - 20459848
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  20459894 cggaatgcttagtcattcaacacgttgaaaatggtgccacatgcata 20459848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 44475945 - 44475899
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  44475945 attagcaagtgttactaaagttaaagaagtaagaacattattgttga 44475899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 44479207 - 44479161
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  44479207 attagcaagtgttactaaagttaaagaagtaagaacattattgttga 44479161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 21861740 - 21861785
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  21861740 ggaatgcttagtcattcaacacgttgaaaatggtgccacatgcata 21861785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 32949560 - 32949516
Alignment:
Q  3 gaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  32949560 gaatgcttagtcattcaacacattgaaaatggtaccacatgcata 32949516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 20454279 - 20454236
Alignment:
Q  4 aatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  20454279 aatgcttagtcattcaacacgttgaaaatggtgccacatgcata 20454236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 362317 - 362363
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||    
T  362317 cggaatacctagtcattcaacacgttgaaaatggtaccacatgcata 362363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 8729486 - 8729532
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||    
T  8729486 attagcaagtgttactaaagttaaagaagtaagaatattattgttga 8729532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19881745 - 19881699
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||    
T  19881745 cggaatgcttagtcattcaacacgttgaaaatgttaccacacgcata 19881699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 44431510 - 44431464
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||    
T  44431510 cggaatgcttagtcattcatcacgttgaaaatggtaccatatgcata 44431464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 15004887 - 15004932
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||    
T  15004887 ggaatgcttagtcattcaacacgttgaaaattgcaccacatgcata 15004932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 21415680 - 21415717
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtacca 39  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21415680 ggaatgcttagtcattcaacacgttgaaaatggtacca 21415717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 363632 - 363593
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccaca 41  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  363632 ggaatgcttagtcattcaacccgttgaaaatggtaccaca 363593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17614551 - 17614513
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtacca 39  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  17614551 cggaatgcttagtcattcaacacgttgaaaatagtacca 17614513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 20453943 - 20453897
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  20453943 attagtaagtgctactaaagttaaagaagtaagaacattattgttga 20453897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 20459565 - 20459519
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  20459565 attagtaagtgttactaaagttaaagaagtaacaacattattgttga 20459519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 24708178 - 24708217
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccac 40  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  24708178 cggaatgcttagtcattcaacccgttgaaaatagtaccac 24708217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17272834 - 17272879
Alignment:
Q  1 cggaatgcttagtcattc-aacacgttgaaaatggtaccacatgcat 46  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||    
T  17272834 cggaatgcttagtcattcaaacacgtt-aaaatggtaccacatgcat 17272879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 21862071 - 21862117
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| ||||||||||||||   ||||||||||||||||||||||||    
T  21862071 attagtaagtgttactaaagggaaagaagtaagaacattattgttga 21862117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38186195 - 38186229
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggt 35  Q
    |||||||||||||||||||||| ||||||||||||    
T  38186195 cggaatgcttagtcattcaacatgttgaaaatggt 38186229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13850134 - 13850180
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13850134 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 13850180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 16573108 - 16573063
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  16573108 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 16573063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 16592554 - 16592599
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  16592554 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 16592599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 146796 - 146750
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  146796 attagcaagtgttactaaagttaaagaagtaagaacattattgttga 146750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 10897679 - 10897725
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  10897679 attagcaagtgttactaaagttaaagaagtaagaacattattgttga 10897725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 14421033 - 14420987
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  14421033 attagcaagtgttactaaagttaaagaagtaagaacattattgttga 14420987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 711078 - 711122
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcat 46  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  711078 ggaatgcttagtcattcaacacgttgaaaatggcaccacatgcat 711122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 11302509 - 11302463
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||    
T  11302509 attagcaagcgttactaaagttaaagaagtaagaacattattgttga 11302463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 11660613 - 11660567
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  11660613 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 11660567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 13255261 - 13255215
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  13255261 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 13255215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13255449 - 13255403
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||    
T  13255449 cggaatgcttagtcattcaacacgttgaaaatggtgtcacatgcata 13255403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13407759 - 13407713
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||    
T  13407759 cggaatgctcagtcattcaacacgttaaaaatggtaccacatgcata 13407713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 15166452 - 15166406
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||    
T  15166452 attagcaagtgttactaaagttaaagaagtaagaatattattgttga 15166406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 11660782 - 11660737
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||    
T  11660782 ggaatgtttagtcattcaacacgttgaaaatggtgccacatgcata 11660737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 21735569 - 21735614
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||    
T  21735569 ggaatgctcagtcattcaacacgttgaaaatggaaccacatgcata 21735614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 18606634 - 18606590
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  18606634 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 18606590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 18871593 - 18871549
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  18871593 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 18871549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 29795459 - 29795415
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  29795459 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 29795415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 29799278 - 29799234
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  29799278 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 29799234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 48743261 - 48743217
Alignment:
Q  3 gaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  48743261 gaatgcttagtcattcaacatgttgaaaatggtgccacatgcata 48743217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 48742970 - 48742929
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  48742970 attagtaagtgttactaaagttaaagaagtaagaacattatt 48742929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 14565384 - 14565340
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||||    
T  14565384 attagtaagtattactaaagttaaagaagtaagaacattattgtt 14565340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 16458925 - 16458881
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcat 46  Q
    |||||||||||| ||||||||| |||||||||| |||||||||||    
T  16458925 ggaatgcttagttattcaacacattgaaaatggcaccacatgcat 16458881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 23666324 - 23666368
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||    
T  23666324 attagtaagtgttactaaagttaaagaagtaataacattattgtt 23666368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13733976 - 13734015
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccac 40  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  13733976 cggaatgcttagtcattcaacccgttgaaaatagtaccac 13734015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 16572900 - 16572857
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgt 196  Q
    ||||| |||||||| ||||||| |||||||||||||||||||||    
T  16572900 attagtaagtgttattaaagttgaagaagtaagaacattattgt 16572857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 16592762 - 16592805
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgt 196  Q
    ||||| |||||||| ||||||| |||||||||||||||||||||    
T  16592762 attagtaagtgttattaaagttgaagaagtaagaacattattgt 16592805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13865451 - 13865497
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||| |||||||| | ||||||||||||||| ||||||||||    
T  13865451 cggaatgctcagtcattcgatacgttgaaaatggtatcacatgcata 13865497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 16007715 - 16007681
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaa 187  Q
    |||||||||||||||||||||| ||||||||||||    
T  16007715 attagcaagtgttactaaagttaaagaagtaagaa 16007681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 16109755 - 16109796
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  16109755 attagtaagtgttactaaagttaaagaagtaagaatattatt 16109796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 29003619 - 29003578
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  29003619 attagtaagtgttactaaagttaaagaagtaagaatattatt 29003578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 34956933 - 34956892
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  34956933 attagtaagtgttactaaagttaaagaagtaagaatattatt 34956892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47976089 - 47976134
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcat 46  Q
    ||||||| ||||| |||||||||||||||||||  |||||||||||    
T  47976089 cggaatgattagtaattcaacacgttgaaaatgacaccacatgcat 47976134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27027566 - 27027520
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27027566 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 27027520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 13877725 - 13877680
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  13877725 ggaatgcttagtcattcaacacgttgaaaattgtaccacatgcata 13877680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15242632 - 15242677
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcat 46  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  15242632 cggaatgcttagtcatttaacacgttgaaaatggtaccacatgcat 15242677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 20899816 - 20899857
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccacatg 43  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20899816 ggaatgcttagtcattcaacacgttgaaaatggtaccacatg 20899857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 33684956 - 33685001
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  33684956 ggaatgcttagtcattcaacatgttgaaaatggtaccacatgcata 33685001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 15989528 - 15989482
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  15989528 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 15989482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15989776 - 15989734
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatg 43  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  15989776 cggaatgcttagtcattcaacacgttgaaaatggtgccacatg 15989734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 18211921 - 18211875
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  18211921 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 18211875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18221122 - 18221076
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  18221122 cggaatgctcagtcattcaacacgttgaaaatggtacgacatgcata 18221076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 24048132 - 24048178
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  24048132 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 24048178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 13881380 - 13881339
Alignment:
Q  6 tgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  13881380 tgcttagtcattcaacacgttgaaaattgtaccacatgcata 13881339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 15533515 - 15533471
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  15533515 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 15533471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 56116319 - 56116359
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccaca 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  56116319 cggaatgcttagtcattcaacccgttgaaaatggtaccaca 56116359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 24047926 - 24047970
Alignment:
Q  3 gaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||| |||||||||||| |||| ||||||    
T  24047926 gaatgcttagtcattcaacaagttgaaaatggtgccacgtgcata 24047970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 36037248 - 36037204
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| |||| |||||||||||||||||    
T  36037248 attagtaagtgttactaaagttaaagaggtaagaacattattgtt 36037204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 49548865 - 49548909
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||| | ||||||||||||||||||||||    
T  49548865 attagtaagtgttactaaaggtaaagaagtaagaacattattgtt 49548909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 15280532 - 15280571
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccac 40  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  15280532 cggaatgcttagtcattcaacccgttgaaaatagtaccac 15280571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 17142608 - 17142573
Alignment:
Q  163 gttactaaagtttaagaagtaagaacattattgttg 198  Q
    |||||||||||| |||||||||||||||||||||||    
T  17142608 gttactaaagttaaagaagtaagaacattattgttg 17142573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 4832020 - 4832061
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  4832020 attagtaagtgttactaaagttaaagaagtaagaatattatt 4832061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 4835315 - 4835356
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  4835315 attagtaagtgttactaaagttaaagaagtaagaatattatt 4835356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 33685136 - 33685181
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttg 198  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||||||    
T  33685136 attagtaagtgttattaaagttgaagaagtatgaacattattgttg 33685181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 179875 - 179921
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  179875 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 179921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6806153 - 6806199
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6806153 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 6806199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 20249682 - 20249728
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  20249682 attagcaagtgttactaaagttaaagaagtaagaacattattgttga 20249728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 29545700 - 29545746
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  29545700 attagcaagtgttactaaagttaaagaagtaagaacattattgttga 29545746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6818921 - 6818875
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||    
T  6818921 cggaattcttagtcattcaacacgttgaaaatggtacgacatgcata 6818875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 10834723 - 10834769
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  10834723 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 10834769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 18899763 - 18899717
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  18899763 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 18899717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 38312669 - 38312715
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||    
T  38312669 attaacaagtgttactaaagttaaagaagtaagaacattattgttga 38312715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 1989457 - 1989502
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||    
T  1989457 ggaatgcttagtcattcaacacgttgaaaatggtgtcacatgcata 1989502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 3802266 - 3802222
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  3802266 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 3802222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 9532554 - 9532510
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  9532554 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 9532510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 12304470 - 12304426
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  12304470 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 12304426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 14764578 - 14764622
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  14764578 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 14764622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17211157 - 17211117
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccaca 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  17211157 cggaatgcttagtcattcaacccgttgaaaatggtaccaca 17211117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 23372326 - 23372370
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  23372326 attagtaagtgttactaaagattaagaagtaagaacattattgtt 23372370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 51299829 - 51299785
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  51299829 attagtaagtgttactaaagattaagaagtaagaacattattgtt 51299785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 10990087 - 10990125
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtacca 39  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  10990087 cggaatgcttagtcattcaacccgttgaaaatggtacca 10990125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 52339216 - 52339254
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtacca 39  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  52339216 cggaatgcttagtcattcaacccgttgaaaatggtacca 52339254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 54519893 - 54519849
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||| | ||||||||||||||||||||||    
T  54519893 attagtaagtgttactaaaggtaaagaagtaagaacattattgtt 54519849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 10834559 - 10834602
Alignment:
Q  4 aatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||    
T  10834559 aatgcttagtcattcaacatgttgaaaatggtgccacgtgcata 10834602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 1989817 - 1989863
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||| ||||||| |||||||||||| |||||||||||    
T  1989817 attagtaagtgttaataaagttaaagaagtaagaatattattgttga 1989863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 13026913 - 13026954
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  13026913 attagtaagtgttactaaagttaaagaagtaagaatattatt 13026954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 17548794 - 17548835
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||| ||||||||||    
T  17548794 attagtaagtgttactaaagttaaagaagtaggaacattatt 17548835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28204796 - 28204842
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  28204796 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 28204842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 16371171 - 16371125
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  16371171 attagcaagtgttactaaagttaaagaagtaagaacattattgttga 16371125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21181609 - 21181655
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  21181609 cggaatgcttagtcattcaacacgttgaaaatggtaccatatgcata 21181655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 16400631 - 16400585
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||    
T  16400631 cggaatgcttagtcattcaacccattgaaaatggtaccacatgcata 16400585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 19209297 - 19209251
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  19209297 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 19209251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 20439029 - 20439075
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||    
T  20439029 attagcaagtgttactaaagttaaagaagttagaacattattgttga 20439075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 20901037 - 20900995
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatg 43  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  20901037 cggaatgcttagtcattcaacacgttgaaaatggtgccacatg 20900995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 28311894 - 28311848
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  28311894 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 28311848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 293801 - 293761
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccaca 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  293801 cggaatgcttagtcattcaactcgttgaaaatggtaccaca 293761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22900739 - 22900778
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccac 40  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  22900739 cggaatgcttagtcattcaacacgttgaaaatagtaccac 22900778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18270219 - 18270177
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatg 43  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  18270219 cggaatgcttagtcattcaacacgttgaaaatagtgccacatg 18270177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18274873 - 18274831
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatg 43  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  18274873 cggaatgcttagtcattcaacacgttgaaaatagtgccacatg 18274831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 19209443 - 19209397
Alignment:
Q  2 ggaatgctta-gtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||    
T  19209443 ggaatgcttaagtcattcaacacgttgaaaatggtgccacatgcata 19209397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28312103 - 28312069
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  28312103 cggaatgcttagtcattcaacacgttgaaaatggt 28312069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 37358221 - 37358182
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccac 40  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  37358221 cggaatgcttagtcattcaacccgttgaaaatagtaccac 37358182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 13529130 - 13529171
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||| ||||||||||    
T  13529130 attagtaagtgttactaaagttaaagaagtaggaacattatt 13529171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 29534220 - 29534179
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  29534220 attagtaagtgttactaaagttaaagaagtaagaatattatt 29534179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1098 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1098
Description:

Target: scaffold1098; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 1082 - 1039
Alignment:
Q  3 gaatgcttagtcattcaacacgttgaaaatggtaccacatgcat 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1082 gaatgcttagtcattcaacacgttgaaaatggtaccacatgcat 1039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 23898 - 23855
Alignment:
Q  3 gaatgcttagtcattcaacacgttgaaaatggtaccacatgcat 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  23898 gaatgcttagtcattcaacacgttgaaaatggtaccacatgcat 23855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 20819 - 20777
Alignment:
Q  4 aatgcttagtcattcaacacgttgaaaatggtaccacatgcat 46  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  20819 aatgcttagtcattcaacacgttgaaaatggtaccacatgcat 20777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 109847 - 109801
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  109847 attagcaagtgttactaaagttaaagaagtaagaacattattgttga 109801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6743 - 6697
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  6743 cggaatgcttagtcattcatcacgttgaaaatggtaccacatgcata 6697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10588 - 10542
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  10588 cggaatgcttactcattcaacacgttgaaaatggtaccacatgcata 10542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2140 - 2094
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  2140 cggaatgcttagtcattcagcacgttgaaaatggtaccacatgcata 2094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8984 - 8938
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  8984 cggaatgcttagtcattcagcacgttgaaaatggtaccacatgcata 8938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 1602 - 1556
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  1602 attagcaagtgttactaaagttaaagaagtaagaacattattgttga 1556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23352151 - 23352105
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  23352151 cggaatgcttagtcattcaacacgttgaaaatggtgccacatgcata 23352105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 221436 - 221390
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  221436 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 221390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13763978 - 13763932
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||    
T  13763978 cggaatgcttagtcattcaacacgttgaaaatggtgccccatgcata 13763932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 23351802 - 23351756
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  23351802 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 23351756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 24266489 - 24266443
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  24266489 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 24266443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 28290727 - 28290773
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||    
T  28290727 attagcaagcgttactaaagttaaagaagtaagaacattattgttga 28290773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 4476092 - 4476048
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  4476092 attagtaagtgttactaaagattaagaagtaagaacattattgtt 4476048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 12941517 - 12941473
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  12941517 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 12941473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 13763661 - 13763615
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  13763661 attagtaagtgttgctaaagttaaagaagtaagaacattattgttga 13763615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 221652 - 221615
Alignment:
Q  3 gaatgcttagtcattcaacacgttgaaaatggtaccac 40  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  221652 gaatgcttagtcattcaacacgttgaaaatggtgccac 221615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 24266685 - 24266649
Alignment:
Q  11 agtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||||| |||||||||||    
T  24266685 agtcattcaacacgttgaaaatggtgccacatgcata 24266649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 29848597 - 29848640
Alignment:
Q  4 aatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||  ||||||||||| |||||||||||    
T  29848597 aatgcttagtcattcaacatattgaaaatggtgccacatgcata 29848640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 29848935 - 29848976
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| ||||||||| |||||||||    
T  29848935 attagtaagtgttactaaagttaaagaagtaaaaacattatt 29848976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 19510708 - 19510662
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  19510708 attagcaagtgttactaaagttaaagaagtaagaacattattgttga 19510662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24277743 - 24277789
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  24277743 cggaatgcttattcattcaacacgttgaaaatggtaccacatgcata 24277789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24384470 - 24384424
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  24384470 cggaatgcttattcattcaacacgttgaaaatggtaccacatgcata 24384424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 37599791 - 37599837
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  37599791 attagcaagtgttactaaagttaaagaagtaagaacattattgttga 37599837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 22358482 - 22358528
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  22358482 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 22358528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 42959761 - 42959715
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  42959761 attagaaagtgttactaaagttaaagaagtaagaacattattgttga 42959715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 23113185 - 23113229
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  23113185 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 23113229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 38146201 - 38146245
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  38146201 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 38146245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 41878434 - 41878478
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  41878434 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 41878478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 16256460 - 16256499
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccac 40  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  16256460 cggaatgcttagtcattcaacacgttgaaaatagtaccac 16256499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 16260054 - 16260093
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccac 40  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  16260054 cggaatgcttagtcattcaacacgttgaaaatagtaccac 16260093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22590218 - 22590257
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccac 40  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  22590218 cggaatgcttagtcattcaacacgttgaaaatagtaccac 22590257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22593773 - 22593812
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccac 40  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  22593773 cggaatgcttagtcattcaacacgttgaaaatagtaccac 22593812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22597328 - 22597367
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccac 40  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  22597328 cggaatgcttagtcattcaacacgttgaaaatagtaccac 22597367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 22469552 - 22469506
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| |||||||||||| |||||||||||    
T  22469552 attagtaagtgttactaaagttaaagaagtaagaatattattgttga 22469506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22469796 - 22469750
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||| ||||||||| | |||||||||||    
T  22469796 cggaatgcttagtcattcaacacattgaaaatgatgccacatgcata 22469750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 22749407 - 22749361
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| |||||||||||| |||||||||||    
T  22749407 attagaaagtgttactaaagttaaagaagtaagaatattattgttga 22749361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 24277928 - 24277974
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  24277928 attagtaagtgttattaaagttgaagaagtaagaacattattgttga 24277974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 24384285 - 24384239
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  24384285 attagtaagtgttattaaagttgaagaagtaagaacattattgttga 24384239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 9775147 - 9775103
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||    
T  9775147 attagtaagtgttactaaagttaaagaagtaataacattattgtt 9775103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 26361533 - 26361572
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccac 40  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  26361533 cggaatgcttagtcattcaacccgttgaaaatagtaccac 26361572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 10816101 - 10816060
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  10816101 attagtaagtgttactaaagttaaagaagtaagaatattatt 10816060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 23538100 - 23538059
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  23538100 attagtaagtgttactaaagttaaagaagtaagaatattatt 23538059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 22358089 - 22358129
Alignment:
Q  3 gaatgcttagtcattcaacacgttgaaaatggtaccacatg 43  Q
    ||||||||||| |||||||| |||||||||||| |||||||    
T  22358089 gaatgcttagttattcaacatgttgaaaatggtgccacatg 22358129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 6482030 - 6481984
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  6482030 attagcaagtgttactaaagttaaagaagtaagaacattattgttga 6481984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 6485497 - 6485451
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  6485497 attagcaagtgttactaaagttaaagaagtaagaacattattgttga 6485451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10040327 - 10040373
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  10040327 cggaatgcttagtcattcatcacgttgaaaatggtaccacatgcata 10040373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23374902 - 23374856
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  23374902 cggaatgcttagtcattcaacaagttgaaaatggtaccacatgcata 23374856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24275762 - 24275808
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  24275762 cggaatgcttagtcattcaacacattgaaaatggtaccacatgcata 24275808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 9240961 - 9240917
Alignment:
Q  155 tagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  9240961 tagcaagtgttactaaagttaaagaagtaagaacattattgttga 9240917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 10686072 - 10686116
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  10686072 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 10686116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 20260553 - 20260509
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  20260553 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 20260509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28352535 - 28352495
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccaca 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  28352535 cggaatgcttagtcattcaacccgttgaaaatggtaccaca 28352495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 19663274 - 19663317
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgt 196  Q
    ||||| |||||||||||||||| |||||||||||||||||||||    
T  19663274 attagtaagtgttactaaagttaaagaagtaagaacattattgt 19663317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 22109456 - 22109411
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||| |||||||| | ||||||||||||    
T  22109456 ggaatgcttagtcattcaacacattgaaaattgcaccacatgcata 22109411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 26896012 - 26895971
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  26896012 attagtaagtgttactaaagttaaagaagtaagaacattatt 26895971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28348710 - 28348670
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccaca 41  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  28348710 cggaatgattagtcattcaacccgttgaaaatggtaccaca 28348670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 6261996 - 6262039
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgt 196  Q
    ||||| || ||||||||||||| |||||||||||||||||||||    
T  6261996 attagtaactgttactaaagttaaagaagtaagaacattattgt 6262039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 6478622 - 6478663
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||| ||||||||||    
T  6478622 attagtaagtgttactaaagttaaagaagtaggaacattatt 6478663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 22702779 - 22702738
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  22702779 attagtaagtgttactaaagttaaagaagtaagaatattatt 22702738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 11865 - 11910
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  11865 ggaatgcttagtcattcaacacgttgaaaattgtaccacatgcata 11910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 14124 - 14169
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  14124 ggaatgcttagtcattcaacacgttgaaaattgtaccacatgcata 14169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 120053 - 120009
Alignment:
Q  3 gaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  120053 gaatgctcagtcattcaacacgttgaaaatggtaccacatgcata 120009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 13929 - 13886
Alignment:
Q  4 aatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  13929 aatgcttagtcattcaacatgttgaaaatggtaccacatgcata 13886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 11924 - 11881
Alignment:
Q  4 aatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  11924 aatgcttagtcattcaacatgttgaaaatggtaccacatgcata 11881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 4120 - 4163
Alignment:
Q  4 aatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  4120 aatgcttagtcattcaacacgttgaaaatggtgccacatgcata 4163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 4445 - 4491
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  4445 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 4491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1276 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1276
Description:

Target: scaffold1276; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 151 - 105
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||    
T  151 cggaatgcttagtcattcaacacgttgaaaacagtaccacatgcata 105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 10607 - 10653
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  10607 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 10653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 21012 - 20966
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  21012 attagtaagtgttactaaagttaaagaagtaagaacattattgttga 20966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21269 - 21223
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||| |||||||||||| |||||||| |||||||||||    
T  21269 cggaatgcttagttattcaacacgttaaaaatggtgccacatgcata 21223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 37409 - 37455
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||    
T  37409 attaacaagtgttactaaagttaaagaagtaagaacattattgttga 37455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 137502 - 137456
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||    
T  137502 cggaatgcttagtcattcatcacgttgaaaatggtaccatatgcata 137456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 1521 - 1484
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaaatggtacca 39  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1521 ggaatgcttagtcattcaacacgttgaaaatggtacca 1484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1427 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 475 - 431
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  475 attagtaagtgttactaaagttaaagaagtaagaacattattgtt 431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 3299 - 3343
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgtt 197  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  3299 attagtaagtgttactaaagattaagaagtaagaacattattgtt 3343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 35054 - 35097
Alignment:
Q  4 aatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  35054 aatgcttagtcattcaacacgttaaaaattgtaccacatgcata 35097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 35279 - 35324
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttg 198  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||||||    
T  35279 attagtaagtgttattaaagttgaagaagtatgaacattattgttg 35324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 2450 - 2404
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  2450 attagtaagtgtttctaaagttaaagaagtaagaacattattgttga 2404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 2742 - 2709
Alignment:
Q  14 cattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||| |||||||||||    
T  2742 cattcaacacgttgaaaatggtgccacatgcata 2709  T

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Target: scaffold0109 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 2026 - 1988
Alignment:
Q  3 gaatgcttagtcattcaacacgttgaaaatggtaccaca 41  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  2026 gaatgcttagtcattcaacccgttgaaaatggtaccaca 1988  T

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Target: scaffold0042 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 50716 - 50670
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||||    
T  50716 cggaatgctcagtcattcaacacgttgaaaatgatgccacatgcata 50670  T

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Target: scaffold0042; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 50498 - 50452
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| |||||||||||||||| |||||||  |||||||||||||||    
T  50498 attagtaagtgttactaaagttgaagaagtgtgaacattattgttga 50452  T

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Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 223890 - 223936
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattattgttga 199  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||||||    
T  223890 attagtaagagttactaaagttaaagaagtaagaacattattgttga 223936  T

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Target: scaffold0012; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 223725 - 223757
Alignment:
Q  3 gaatgcttagtcattcaacacgttgaaaatggt 35  Q
    |||||||||||||||||||||||||||||||||    
T  223725 gaatgcttagtcattcaacacgttgaaaatggt 223757  T

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Target: scaffold0107 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2797 - 2757
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccaca 41  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  2797 cggaatgcttagtcattcaacccgttgaaaatagtaccaca 2757  T

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Target: scaffold0058 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 40360 - 40395
Alignment:
Q  12 gtcattcaacacgttgaaaatggtaccacatgcata 47  Q
    |||||||||||||||||||||||||| |||||||||    
T  40360 gtcattcaacacgttgaaaatggtactacatgcata 40395  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6223 - 6265
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccacatgc 44  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  6223 cggaatgcttagtcattcaacccgttg-aaatggtaccacatgc 6265  T

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Target: scaffold0021 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 134360 - 134399
Alignment:
Q  1 cggaatgcttagtcattcaacacgttgaaaatggtaccac 40  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  134360 cggaatgcttagtcattcaacccgttgaaaatagtaccac 134399  T

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Target: scaffold0021; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 145821 - 145780
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  145821 attagtaagtgttactaaagttaaagaagtaagaatattatt 145780  T

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Target: scaffold0970 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0970
Description:

Target: scaffold0970; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 3793 - 3752
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||| ||||||||||    
T  3793 attagtaagtgttactaaagttaaagaagtaggaacattatt 3752  T

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Target: scaffold0188 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 901 - 942
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  901 attagtaagtgttactaaagttaaagaagtaagaaaattatt 942  T

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Target: scaffold0117 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 41552 - 41593
Alignment:
Q  153 attagcaagtgttactaaagtttaagaagtaagaacattatt 194  Q
    ||||| |||||||||||||||| |||||||| ||||||||||    
T  41552 attagtaagtgttactaaagttaaagaagtaggaacattatt 41593  T

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Target: scaffold0860 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0860
Description:

Target: scaffold0860; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 170 - 142
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaa 30  Q
    |||||||||||||||||||||||||||||    
T  170 ggaatgcttagtcattcaacacgttgaaa 142  T

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Target: scaffold0609 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 4335 - 4307
Alignment:
Q  2 ggaatgcttagtcattcaacacgttgaaa 30  Q
    |||||||||||||||||||||||||||||    
T  4335 ggaatgcttagtcattcaacacgttgaaa 4307  T

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