View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_74 (Length: 280)
Name: NF8890_low_74
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_74 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 13651368 - 13651630
Alignment:
| Q |
19 |
caaatagcatcttatcttatcctatagatcacaaaattgagattgtagaaaaatggaaacaccgcatgtgttaatcttcccatgtccagcacaaggccat |
118 |
Q |
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| T |
13651368 |
caaatagcatcttatcttatcctatagatcacaaaattgagattgttgaaaaatggaaacaccgcatgtgttaatcttcccatgtccagcacaaggccat |
13651467 |
T |
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| Q |
119 |
gtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaaacactgagtacatccacaacagactcattaatttga |
218 |
Q |
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| T |
13651468 |
gtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaaacactgaatacatccacaacagactcattagtttga |
13651567 |
T |
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| Q |
219 |
a---tgatgatgttaaatcaatttcacaatgttaccctaagcttcaattcaagaccatctctg |
278 |
Q |
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| T |
13651568 |
atattgatgatgttaaatcaatttcacaatgttaccctaagcttcaattcaagaccatctctg |
13651630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 278
Target Start/End: Original strand, 13646354 - 13646549
Alignment:
| Q |
83 |
catgtgttaatcttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaa |
182 |
Q |
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| T |
13646354 |
catgtgctaatcttcccatgtccagcacaaggccatgtaaattcaatgctaaagctagctgaacttcttgcaattcaaaacatctacatcactttcctca |
13646453 |
T |
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| Q |
183 |
acactgagtacatccacaacagactcattaatttgaatgatgatgttaaatcaatttcacaatgttaccctaagcttcaattcaagaccatctctg |
278 |
Q |
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| T |
13646454 |
acaccaaatacatccataaccgactcatacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaattcaagactatctctg |
13646549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 278
Target Start/End: Original strand, 13656680 - 13656875
Alignment:
| Q |
83 |
catgtgttaatcttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaa |
182 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| | |||| || || || | |
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| T |
13656680 |
catgtgctaatcttcccatgtccagcacaaggccatgtaaatccaatgctaaagctagctgaacttcttgcaattcaaaacatctacatcacttttctca |
13656779 |
T |
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| Q |
183 |
acactgagtacatccacaacagactcattaatttgaatgatgatgttaaatcaatttcacaatgttaccctaagcttcaattcaagaccatctctg |
278 |
Q |
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| T |
13656780 |
acaccaaatacatccataaccgactcatacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaattcaagaccatctctg |
13656875 |
T |
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