View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_75 (Length: 273)
Name: NF8890_low_75
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_75 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 39234357 - 39234590
Alignment:
| Q |
22 |
gcattgggctgattttttcgactcatcaaa-gcaaagtgatcaaagtatacaattcacataacttattatattttatttatcacattatacagctaaagt |
120 |
Q |
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| T |
39234357 |
gcattgggctgattttttcaactcatcaaaagcaaagtgatcaaagtatacaattcatataacttattatattttatttatcacattatacggctaaagt |
39234456 |
T |
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| Q |
121 |
ttgattacttttggaataatggacccttaatatgtttttaaaactttaaagtggatatatgctttaaaaattcccgtcacagtacttcacagttaatcat |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39234457 |
ttgattacttttggaataatggacccttaatatgtttttaaaactttaaggtggatatatgctttaaaaattcccgtcacagtacttcacagttaatcat |
39234556 |
T |
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| Q |
221 |
tttcgcctcgccacatctggtatatatgaatgtg |
254 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
39234557 |
tttcgcctcgccacatctggtatatatgagtgtg |
39234590 |
T |
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