View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_78 (Length: 265)
Name: NF8890_low_78
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_78 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 31170887 - 31171114
Alignment:
| Q |
24 |
agtatgaaaagttaaaaagcaagtgatatttgctcaaaattgtttgtcataaattagtagccattgagcagaaaggnnnnnnntacgacattatgaaatt |
123 |
Q |
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| T |
31170887 |
agtatgaaaagttaaaaagcaagtgatatttgctcaaaattgtttgtcataaattagtagccatcgagcagaaagggaaaaaatacgacattatgaaatt |
31170986 |
T |
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| Q |
124 |
atcttacgaacagagatcttaaggagggaaaaggaagaaataaacttttatgactttggccttacattgactctttctatacggcgcatttcgtcttcaa |
223 |
Q |
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| T |
31170987 |
atcttacgaacagagatcttaaggagggaaaaggaagaaataaacttttatgactttggccttacattgactctttctatacggcgcatttcgtcttcaa |
31171086 |
T |
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| Q |
224 |
gtaatgatagttgtgcagctgatgtcca |
251 |
Q |
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| T |
31171087 |
gtaatgatagttgtgcagctgatgtcca |
31171114 |
T |
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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 35224424 - 35224494
Alignment:
| Q |
181 |
ggccttacattgactctttctatacggcgcatttcgtcttcaagtaatgatagttgtgcagctgatgtcca |
251 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| |
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| T |
35224424 |
ggccttacattgactctttctatacggcgcatttcatcttcgagtaatgatagctgtgcagcagatgtcca |
35224494 |
T |
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