View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8890_low_83 (Length: 252)

Name: NF8890_low_83
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8890_low_83
NF8890_low_83
[»] chr1 (3 HSPs)
chr1 (10-252)||(42973894-42974135)
chr1 (147-245)||(42980474-42980572)
chr1 (10-66)||(42980329-42980385)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 42973894 - 42974135
Alignment:
Q  10 gaagcagagacaatggggaatcagtccagtaatcccaaacagtaccactgtcaagaagaagaaaaaaccttccaattcaaaatcatgatagaattataga 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42973894 gaagcatagacaatggggaatcagtccagtaatcccaaacagtaccactgtcaagaagaa-aaaaaaccttccaattcaaaatcatgatagaattataga 42973992  T
Q  110 cttcaaatcatgctaaatatcaatttattaaattaaaatacctgcatgccttccaagcatatgaaatcccagttacattggcatgaagtgccttctgaac 209  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42973993 cttcaaatcatgttaaatttcaatttattaaattaaaatacctgcatgccttccaagcatatgaaatcccagttacattggcatgaagtgccttctgaac 42974092  T
Q  210 ttctggacgattgaagtacacatcagaatacctttcagcacaa 252  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42974093 ttctggacgattgaagtacacatcagaatacctttcagcacaa 42974135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 42980474 - 42980572
Alignment:
Q  147 atacctgcatgccttccaagcatatgaaatcccagttacattggcatgaagtgccttctgaacttctggacgattgaagtacacatcagaatacctttc 245  Q
    ||||||||||| |||||||  ||||| |||||| || |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  42980474 atacctgcatgtcttccaaatatatggaatccctgtaacattggcatgaagcgccttctgcacttctggacgattgaaatacacatcagaatgcctttc 42980572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 42980329 - 42980385
Alignment:
Q  10 gaagcagagacaatggggaatcagtccagtaatcccaaacagtaccactgtcaagaa 66  Q
    |||||| ||||||||||||||||||||| |||| || |||| || ||||||||||||    
T  42980329 gaagcatagacaatggggaatcagtccaataattcccaacaatatcactgtcaagaa 42980385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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