View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_87 (Length: 247)
Name: NF8890_low_87
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_87 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 9076237 - 9076458
Alignment:
| Q |
19 |
atcactgagacacatggcctagtcaatgaataagaactagaaaatatctaaattagttcttgaaattgtgtattgaatcaatctagtcccttacattgtc |
118 |
Q |
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| T |
9076237 |
atcactgagacacatggcctagtcaatgaataagaactagaaaatatctaaattagttcttgaaattgtgtattgaatcaatctagtcccttacattgtc |
9076336 |
T |
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| Q |
119 |
gatattctaaagtgatcaatgagattccaaataaatttaaccaagtgtgtccctcctttagtaattgtatctactagaacaacattaaattggtaatgtc |
218 |
Q |
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| T |
9076337 |
aatattctaaagtgatcaatgaaattccaaataaatttaaccaagtgtgtccctcctttagtaattgtatctactagaacaacattaaattggtaatgtc |
9076436 |
T |
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| Q |
219 |
aatgatggattaaaaactaaga |
240 |
Q |
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| T |
9076437 |
aatgatggattaaaaactaaga |
9076458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 155
Target Start/End: Original strand, 9067593 - 9067703
Alignment:
| Q |
46 |
gaataagaactagaaaatatctaaattagttcttgaaattgt-gtattgaatcaatctagtcccttacattgtcgatattctaaagtgatcaatgagatt |
144 |
Q |
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|||||||||| | |||||| ||||||| | |||||||||| | ||||||||||| ||||||| |||||| |||||||| |||||||| || || ||| |
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| T |
9067593 |
gaataagaacgactaaatatttaaattaatctttgaaattgtaggattgaatcaatgcagtccctcacattgccgatattccaaagtgattaaagaaatt |
9067692 |
T |
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| Q |
145 |
ccaaataaatt |
155 |
Q |
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| T |
9067693 |
ccaaaaaaatt |
9067703 |
T |
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