View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_90 (Length: 243)
Name: NF8890_low_90
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_90 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 30126 - 30361
Alignment:
| Q |
8 |
atggacatcaacctcaacgatgaagatccatccaacgctgaaatcctcaacgaactcggcgaagatatgttcaaatacttttgcaaaaaagcttccgtca |
107 |
Q |
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| T |
30126 |
atggacatcgacctcaacgatgaagatccatccaacgctgaaatcctcaacgaactcggcgaagatatgttcaaatacttttgcaaaagagcttccgtca |
30225 |
T |
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| Q |
108 |
tgttcttcgatcaatacggtttaatcagtcaccaaatcaactcctataatcaattcatcacttctggtcttcaatccgcttttgattccttcggtgatct |
207 |
Q |
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| T |
30226 |
tgttcttcgatcaatacggtttaatcagtcaccaaatcaactcctataatcaattcatcacttctggtcttcaatccgcttttgattccttcggtgatct |
30325 |
T |
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| Q |
208 |
cactgttacgccgggttttgatccttctaagaaagc |
243 |
Q |
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| T |
30326 |
cactgttacgccgggttttgatccttctaagaaagc |
30361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 48883546 - 48883328
Alignment:
| Q |
24 |
acgatgaagatccatccaacgctgaaatcctcaacgaactcggcgaagatatgttcaaatacttttgcaaaaaagcttccgtcatgttcttcgatcaata |
123 |
Q |
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| T |
48883546 |
acgatgaagatcaatccaacgccgaaatcctcaacgaactcggcgacgatatggtcaaatacttttgcaagaaagcttccgttatgttcttcgaccaata |
48883447 |
T |
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| Q |
124 |
cggtttaatcagtcaccaaatcaactcctataatcaattcatcacttctggtcttcaatccgcttttgattccttcggtgatctcactgttacgccgggt |
223 |
Q |
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| T |
48883446 |
cggtttaatcagtcaccaaatcaactcgtacaatcaattcatcaattcgggtcttcaaagcgctttcgattccttcggtgatctcactgttacgcctggt |
48883347 |
T |
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| Q |
224 |
tttgatccttctaagaaag |
242 |
Q |
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| T |
48883346 |
tttgatccttctaagaaag |
48883328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 53014798 - 53014590
Alignment:
| Q |
35 |
ccatccaacgctgaaatcctcaacgaactcggcgaagatatgttcaaatacttttgcaaaaaagcttccgtcatgttcttcgatcaatacggtttaatca |
134 |
Q |
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| T |
53014798 |
ccatcaaatgctgaaatcctcaacgaactaggtgaagacatggtcaaatatttctgcaaaaaagcttccatcgtgttcttcaacgagtacggtttaatca |
53014699 |
T |
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| Q |
135 |
gtcaccaaatcaactcctataatcaattcatcacttctggtcttcaatccgcttttgattccttcggtgatctcactgttacgcc-gggttttgatcctt |
233 |
Q |
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| T |
53014698 |
gtcaccaaatcaattcctataattaattcatcacttctggtcttcaaaatgctttcaattcctttggagagcttacagttacgcctggtttttgaccctt |
53014599 |
T |
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| Q |
234 |
ctaagaaag |
242 |
Q |
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||| ||||| |
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| T |
53014598 |
ctacgaaag |
53014590 |
T |
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