View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_91 (Length: 241)
Name: NF8890_low_91
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_91 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 1046746 - 1046976
Alignment:
| Q |
11 |
acatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaaca |
110 |
Q |
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| T |
1046746 |
acatcacaacccgatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaaca |
1046845 |
T |
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| Q |
111 |
aagtaataatttcttatggcaaggttttgattttccttgtgatactttgttgccagacatgaagcttggatgggacctaaaaatcggtcttaatcgtcca |
210 |
Q |
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| T |
1046846 |
aagtaataatttcttatggcaaggttttgattttccttgtgatactttgttgccagacatgaagcttggatgggacctaaaaattggtcttaatcgtcca |
1046945 |
T |
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| Q |
211 |
ttaacttcttggaaaaattgggacgatccat |
241 |
Q |
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| T |
1046946 |
ttaacttcttggaaaaattgggacgatccat |
1046976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 1087220 - 1087450
Alignment:
| Q |
11 |
acatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaaca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1087220 |
acatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaaca |
1087319 |
T |
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| Q |
111 |
aagtaataatttcttatggcaaggttttgattttccttgtgatactttgttgccagacatgaagcttggatgggacctaaaaatcggtcttaatcgtcca |
210 |
Q |
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| T |
1087320 |
aagtaataatttcttatggcaaggttttgattttccttgtgatactttgttgccagacatgaagcttggatgggacctaaaaaccggtcttaatcgtcaa |
1087419 |
T |
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| Q |
211 |
ttaacttcttggaaaaattgggacgatccat |
241 |
Q |
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| T |
1087420 |
ttaacttcatggaaaagttgggacgatccat |
1087450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 1103776 - 1104004
Alignment:
| Q |
11 |
acatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaaca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1103776 |
acatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaaca |
1103875 |
T |
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| Q |
111 |
aagtaataatttcttatggcaaggttttgattttccttgtgatactttgttgccagacatgaagcttggatgggacctaaaaatcggtcttaatcgtcca |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
1103876 |
aagtaataatttcttatggcaaggttttgattttccttgtgatactttgttgccagacatgaagcttggatgggacctaaaaaccggtcttaatcgtcaa |
1103975 |
T |
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| Q |
211 |
ttaacttcttggaaaaattgggacgatcc |
239 |
Q |
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| T |
1103976 |
ttaacttcatggaaaaattgggatgatcc |
1104004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 1071559 - 1071789
Alignment:
| Q |
11 |
acatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaaca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1071559 |
acatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaaca |
1071658 |
T |
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| Q |
111 |
aagtaataatttcttatggcaaggttttgattttccttgtgatactttgttgccagacatgaagcttggatgggacctaaaaatcggtcttaatcgtcca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| |||||| |||||||||||||| | |
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| T |
1071659 |
aagtaataatttcttatggcaaggttttgattttccttgtgatactttgttggcaggcatgaagcatggatgggacttaaaaaccggtcttaatcgtcaa |
1071758 |
T |
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| Q |
211 |
ttaacttcttggaaaaattgggacgatccat |
241 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1071759 |
ttaacttcttggaaaaattgggacgatccat |
1071789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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