View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8890_low_92 (Length: 240)
Name: NF8890_low_92
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8890_low_92 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 52711435 - 52711214
Alignment:
| Q |
19 |
ttctctaccgttaagcgaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttctgaaataagaagtttagcagct |
118 |
Q |
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| T |
52711435 |
ttctctaccgttaagcgaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttctgaaataagaagtttagcagct |
52711336 |
T |
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| Q |
119 |
ctatattcaaacaagaaaagaatgagtgtgtaccagataacactttgcagaacaacaatttgtaccataagatttcctgagaaatcaccatacatggctt |
218 |
Q |
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| T |
52711335 |
ctatattcaaacaagaaaagaatgagtgtgtaccagataacactttgcagaacaacaatttgtaccataagatttcctgagaaatcaccatacatggctt |
52711236 |
T |
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| Q |
219 |
ttaaaagagggattcccatgat |
240 |
Q |
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| T |
52711235 |
ttaaaagagggattcccatgat |
52711214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 52716744 - 52716525
Alignment:
| Q |
18 |
gttctctaccgttaagcgaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttctgaaataagaagtttagcagc |
117 |
Q |
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| T |
52716744 |
gttctctaccgttaagagaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctgttataagaagtttagcagc |
52716645 |
T |
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| Q |
118 |
tctatattcaaacaagaaaagaatgagtgtgtaccagataacactttgcagaacaacaatttgtaccataagatttcctgagaaatcaccatacatggct |
217 |
Q |
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| T |
52716644 |
tctatattcaaacaaaaacaacataagagtgtaccaaataacactttgaagaacaacaatttgtaccataagatttcctgagaaatcaccatacatagct |
52716545 |
T |
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| Q |
218 |
tttaaaagagggattcccat |
237 |
Q |
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| T |
52716544 |
cttaaaagagggattcccat |
52716525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 33102441 - 33102380
Alignment:
| Q |
35 |
gaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttc |
96 |
Q |
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| T |
33102441 |
gaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
33102380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 34971233 - 34971172
Alignment:
| Q |
35 |
gaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttc |
96 |
Q |
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| T |
34971233 |
gaaagaacatcagaatcaactttgaatgatataatagaaccagcagtatcaggaaactgttc |
34971172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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