View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8890_low_95 (Length: 239)

Name: NF8890_low_95
Description: NF8890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8890_low_95
NF8890_low_95
[»] chr8 (4 HSPs)
chr8 (1-148)||(37227763-37227909)
chr8 (1-144)||(14096729-14096871)
chr8 (162-210)||(37227525-37227574)
chr8 (162-221)||(15909514-15909574)
[»] chr1 (11 HSPs)
chr1 (1-148)||(48999865-49000011)
chr1 (1-141)||(33297177-33297316)
chr1 (1-144)||(40553556-40553698)
chr1 (34-148)||(44489823-44489940)
chr1 (162-221)||(33297046-33297106)
chr1 (33-104)||(43782782-43782853)
chr1 (162-221)||(49000198-49000258)
chr1 (1-104)||(3375979-3376081)
chr1 (43-104)||(45152756-45152817)
chr1 (162-217)||(44490131-44490187)
chr1 (162-221)||(45153049-45153109)
[»] chr4 (11 HSPs)
chr4 (1-148)||(25147373-25147519)
chr4 (1-148)||(42705172-42705318)
chr4 (1-148)||(39465386-39465530)
chr4 (66-148)||(32305730-32305812)
chr4 (1-148)||(3680863-3681003)
chr4 (1-70)||(32307880-32307948)
chr4 (162-221)||(48577273-48577333)
chr4 (162-220)||(42704928-42704987)
chr4 (164-221)||(3681194-3681252)
chr4 (162-221)||(32305481-32305541)
chr4 (170-221)||(39465727-39465779)
[»] chr5 (7 HSPs)
chr5 (1-148)||(13274121-13274267)
chr5 (1-148)||(2743035-2743181)
chr5 (15-148)||(21101391-21101523)
chr5 (162-221)||(2743328-2743388)
chr5 (162-221)||(13274456-13274516)
chr5 (33-86)||(26653561-26653614)
chr5 (33-86)||(26925146-26925199)
[»] chr3 (4 HSPs)
chr3 (1-148)||(6777860-6778006)
chr3 (1-148)||(34437814-34437959)
chr3 (1-148)||(1596270-1596416)
chr3 (162-221)||(34437565-34437625)
[»] chr6 (3 HSPs)
chr6 (15-148)||(6285770-6285902)
chr6 (1-141)||(35014339-35014478)
chr6 (33-78)||(2029786-2029831)
[»] scaffold0408 (1 HSPs)
scaffold0408 (1-144)||(7071-7213)
[»] chr7 (4 HSPs)
chr7 (1-148)||(38457522-38457668)
chr7 (1-104)||(12627459-12627561)
chr7 (162-218)||(12627791-12627848)
chr7 (162-221)||(1326634-1326694)
[»] scaffold0251 (2 HSPs)
scaffold0251 (1-123)||(17042-17163)
scaffold0251 (162-220)||(16767-16826)
[»] scaffold0007 (2 HSPs)
scaffold0007 (24-148)||(257301-257424)
scaffold0007 (162-222)||(257051-257112)
[»] chr2 (3 HSPs)
chr2 (3-141)||(28035687-28035824)
chr2 (1-140)||(31116936-31117074)
chr2 (162-221)||(28036021-28036081)
[»] scaffold0018 (2 HSPs)
scaffold0018 (33-104)||(180406-180477)
scaffold0018 (192-221)||(180116-180145)
[»] scaffold0010 (2 HSPs)
scaffold0010 (1-72)||(32354-32424)
scaffold0010 (162-220)||(32030-32089)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 37227909 - 37227763
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| ||||| ||||||||||||||  |||||| ||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  37227909 tggatcatggccgacatcgacaggatggtccc-tcacttgccagagcgggttcttaggcagtacgggtatgtccagactattcccagggctcctacagac 37227811  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcacggagttt 148  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  37227810 attgagcttattgcggcggatgacgtggcccaggccttcacggagttt 37227763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 14096729 - 14096871
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| |||||||||||  |||||||| |||||| ||||||||| |||||||||||||| |||||||  ||||||||||| || |||||||||||    
T  14096729 tggatcatggccgacagcgacataatggtccg-tcacttgccagagcggtttcttaggcagtacaggtatgtccagactattcccttgcctcctacagac 14096827  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcacgga 144  Q
    ||||||||| ||||||| ||||||||| | ||| ||||||||||    
T  14096828 attgagcttcttgcggcagatgatgtggctcagaccttcacgga 14096871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 37227574 - 37227525
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcct-cagacccataccagatcatca 210  Q
    ||||||||||||||| |||| ||||||| ||| |||||||||||||||||    
T  37227574 tgttgagcagcagtgggccagacatcctccagtcccataccagatcatca 37227525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 15909574 - 15909514
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcctca-gacccataccagatcatcaacaacatcaga 221  Q
    ||||||| ||||||| |||| ||||||||  ||| ||| ||||||||||||||||||||||    
T  15909574 tgttgagtagcagtgggccacacatcctcccgactcattccagatcatcaacaacatcaga 15909514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 48999865 - 49000011
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| || || ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  48999865 tggatcatggccggcaacgacaggatggtccg-tcacttgccagagcgggttcttaggcagtacgggtatgtctagactattcccagggctcctacagac 48999963  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcacggagttt 148  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  48999964 attgagcttattgcggcggatgacgtggctcaggccttcacggagttt 49000011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 33297316 - 33297177
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||    
T  33297316 tggatcatggccgacagcgacaggatggtccg-tcacttgccagagcgggttcttaggcagtacgggtatgaccagactattcccagggctcctacagac 33297218  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcac 141  Q
    |||||||||||||||||| |||| ||| ||||| |||||||    
T  33297217 attgagcttattgcggcgaatgacgtggcccagaccttcac 33297177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 40553698 - 40553556
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| || |||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||  |||||||||||| |||||||||||||    
T  40553698 tggatcatggccggcagcgacaggatggtccg-tcacttgccagagcgggttcttaggcagtacgagtatgtccagactattcccagggctcctacagac 40553600  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcacgga 144  Q
    ||||||||||||| |||| |||| ||| ||||||||||||||||    
T  40553599 attgagcttattgtggcgaatgaggtggcccaggccttcacgga 40553556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 44489823 - 44489940
Alignment:
Q  34 tcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagacattgagcttattgcggc---ggatgatgtgacc 130  Q
    |||||| |||||||||||||||||| |||||||||||||  ||| |||||||| |||||||||| |||||||||||||||||||   |||||| ||| ||    
T  44489823 tcacttgccagagcgggttcttaggtagtacgggtatgtccagattattcccagggctcctacatacattgagcttattgcggcggtggatgacgtggcc 44489922  T
Q  131 caggccttcacggagttt 148  Q
    ||||||||||||||||||    
T  44489923 caggccttcacggagttt 44489940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 33297106 - 33297046
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcctc-agacccataccagatcatcaacaacatcaga 221  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||    
T  33297106 tgttgagcagcagtgggccaaacatcctctagacccataccagatcatcagcaacatcaga 33297046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 43782853 - 43782782
Alignment:
Q  33 gtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagacattg 104  Q
    ||||||| |||||||| ||||||||||| |||| ||||||  ||||||| |||||| |||||||||||||||    
T  43782853 gtcacttgccagagcgagttcttaggcaatacgagtatgtccagactatacccatgcctcctacagacattg 43782782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 49000198 - 49000258
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcctc-agacccataccagatcatcaacaacatcaga 221  Q
    ||||||||||||||| |||| |||||||| |||||||||||| ||||||| ||||||||||    
T  49000198 tgttgagcagcagtgggccagacatcctccagacccataccaaatcatcagcaacatcaga 49000258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3376081 - 3375979
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| ||  || |||||||||||||| |||||| |||||||||||||||||||| |||  ||||||  |||||  |||||  |||||||||||     
T  3376081 tggatcatggccggtagagacaggatggtccg-tcacttgccagagcgggttcttaggcaatacatgtatgtccagactggtcccagagctcctacagat 3375983  T
Q  101 attg 104  Q
    ||||    
T  3375982 attg 3375979  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 45152756 - 45152817
Alignment:
Q  43 agagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagacattg 104  Q
    |||||||||||||||||||| |||||||||  ||||| |||| | |  ||||||||||||||    
T  45152756 agagcgggttcttaggcagttcgggtatgtccagactgttcctaggcatcctacagacattg 45152817  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 44490131 - 44490187
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcct-cagacccataccagatcatcaacaacat 217  Q
    ||||||||||||||| |||| ||||||| ||| |||||||||||||| || ||||||    
T  44490131 tgttgagcagcagtgggccagacatcctccaggcccataccagatcaccagcaacat 44490187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 45153049 - 45153109
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcctca-gacccataccagatcatcaacaacatcaga 221  Q
    |||||||||||| |||| || ||||||||  |||||||| || ||||||||||||||||||    
T  45153049 tgttgagcagcaatgagtcagacatcctcctgacccatatcaaatcatcaacaacatcaga 45153109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 25147373 - 25147519
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| || |||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||     
T  25147373 tggatcatggccggcagcgacaggatggtctg-tcacttgccagagcgggttcttaggcagtacgggtatgtccagactattcccatggctcctagagat 25147471  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcacggagttt 148  Q
    ||| ||||||||||||||||||| ||| |||||||||||||| |||||    
T  25147472 attaagcttattgcggcggatgacgtggcccaggccttcacgaagttt 25147519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 42705318 - 42705172
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| || |||||||| || |||||| |||||| ||||||||||||||||||||||||||| ||||  | |||||||||| |||||||||||||    
T  42705318 tggatcatgggcggcagcgacatgaaggtccg-tcacttgccagagcgggttcttaggcagtacgggcatgtccatactattcccagggctcctacagac 42705220  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcacggagttt 148  Q
    ||||||||||||||| | ||||| ||| ||||||||||||||||||||    
T  42705219 attgagcttattgcgacagatgacgtggcccaggccttcacggagttt 42705172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 39465386 - 39465530
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| || |||||||||||||||||| | |||| ||||||| ||||||||||||||| ||||||||   |||||||| || |||| ||||||||    
T  39465386 tggatcatggccggcagcgacaggatggtccg-taacttgccagagccggttcttaggcagtatgggtatgtc--gactattctcagggcttctacagac 39465482  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcacggagttt 148  Q
    |||||||||||||||||| |||||||| | |||||||||| |||||||    
T  39465483 attgagcttattgcggcgaatgatgtggctcaggccttcatggagttt 39465530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 32305812 - 32305730
Alignment:
Q  66 ggtatgtttagactattcccatggctcctacagacattgagcttattgcggcggatgatgtgacccaggccttcacggagttt 148  Q
    |||||||  |||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||  ||||||||||||||    
T  32305812 ggtatgtccagactattcccagggctcctacagacattgagcttattgcggcggatgacgtggcccataccttcacggagttt 32305730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 3680863 - 3681003
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| || |||||||| ||||||||| |||||| |||||||||||||||||  ||||      |||  | | ||||| || |||||||||||||    
T  3680863 tggatcatggccggcagcgacaagatggtccg-tcacttgccagagcgggttcttagatagta------tgtccatattattctcagggctcctacagac 3680955  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcacggagttt 148  Q
    ||||||||||||||||| ||||  ||| ||||||||||||||||||||    
T  3680956 attgagcttattgcggcagatggcgtggcccaggccttcacggagttt 3681003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32307948 - 32307880
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtat 70  Q
    |||||||||| ||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||    
T  32307948 tggatcatggccgacagcgacaggatggtccg-tcacttgcctgagcgggttcttaggcagtacgggtat 32307880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 48577333 - 48577273
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcctc-agacccataccagatcatcaacaacatcaga 221  Q
    ||||||||||||||  |||| |||||||| |||| ||||||||||||||||||||||||||    
T  48577333 tgttgagcagcagtaggccagacatcctccagactcataccagatcatcaacaacatcaga 48577273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 42704987 - 42704928
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcctca-gacccataccagatcatcaacaacatcag 220  Q
    ||||||||||||||| |||| ||||||||  ||||||||||||||||||| |||||||||    
T  42704987 tgttgagcagcagtgggccagacatcctcccgacccataccagatcatcagcaacatcag 42704928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 3681194 - 3681252
Alignment:
Q  164 ttgagcagcagtgagccaaacatcctc-agacccataccagatcatcaacaacatcaga 221  Q
    |||||||||||||||| | |||||||| ||||||||| ||||||||||||||| |||||    
T  3681194 ttgagcagcagtgagctagacatcctccagacccatatcagatcatcaacaacgtcaga 3681252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 32305541 - 32305481
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcctc-agacccataccagatcatcaacaacatcaga 221  Q
    ||||||||||  ||| |||| |||||||| |||||||||||| ||||||| ||||||||||    
T  32305541 tgttgagcagttgtgggccagacatcctccagacccataccatatcatcagcaacatcaga 32305481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 39465727 - 39465779
Alignment:
Q  170 agcagtgagccaaacatcctc-agacccataccagatcatcaacaacatcaga 221  Q
    ||||||| | || |||||||| |||||||||||||||||||||||| ||||||    
T  39465727 agcagtgggtcagacatcctccagacccataccagatcatcaacaatatcaga 39465779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 13274121 - 13274267
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| || |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||| |    
T  13274121 tggatcatggccggcagcgacaggattgtccg-tcacttgccagagcgggttcttaggcagtacgggtatgtccagactattcccagggctcctacagcc 13274219  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcacggagttt 148  Q
    |||||||||||||||| |||||| ||| || |||||||||| ||||||    
T  13274220 attgagcttattgcggtggatgacgtggcctaggccttcacagagttt 13274267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 2743035 - 2743181
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||  || |||||||||||||||||  ||||||  ||||||||||||||||| |||||||||||||  | ||||||| || |||||||||||||    
T  2743035 tggatcatgaccggcagcgacaggatggtcca-tcacttgtcagagcgggttcttaggaagtacgggtatgtccaaactattctcagggctcctacagac 2743133  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcacggagttt 148  Q
    ||||| ||||||||||||||||| ||| |||||| |||||||||||||    
T  2743134 attgaacttattgcggcggatgacgtggcccaggacttcacggagttt 2743181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 21101391 - 21101523
Alignment:
Q  15 cagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagacattgagcttattgc 114  Q
    ||||||| |||||||||| |||||| ||||| ||||||||||||||||||| ||||||  |||||||||| | |||||||||||||||||| ||||||||    
T  21101391 cagcgacgggatggtccg-tcacttaccagaccgggttcttaggcagtacgtgtatgtccagactattcctagggctcctacagacattgaccttattgc 21101489  T
Q  115 ggcggatgatgtgacccaggccttcacggagttt 148  Q
    ||| ||||| ||| | ||| ||||| ||||||||    
T  21101490 ggcagatgacgtggcacagaccttcgcggagttt 21101523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 2743328 - 2743388
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcctc-agacccataccagatcatcaacaacatcaga 221  Q
    ||||||||||||||| |||| |||||||| |||||||||||||||||||| ||||||||||    
T  2743328 tgttgagcagcagtgggccagacatcctctagacccataccagatcatcagcaacatcaga 2743388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 13274456 - 13274516
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcctca-gacccataccagatcatcaacaacatcaga 221  Q
    ||||||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||    
T  13274456 tgttgagcagcagtgggccagacatcctcaagacccataacagatcatcaacaacatcaga 13274516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 26653561 - 26653614
Alignment:
Q  33 gtcactttccagagcgggttcttaggcagtacgggtatgtttagactattccca 86  Q
    ||||||| ||||| ||||||||||||||||||||||||||  ||||||||||||    
T  26653561 gtcacttgccagaacgggttcttaggcagtacgggtatgtccagactattccca 26653614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 26925146 - 26925199
Alignment:
Q  33 gtcactttccagagcgggttcttaggcagtacgggtatgtttagactattccca 86  Q
    ||||||| ||||| ||||||||||||||||||||||||||  ||||||||||||    
T  26925146 gtcacttgccagaacgggttcttaggcagtacgggtatgtccagactattccca 26925199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 6777860 - 6778006
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| ||||| ||||||||||||||| |||||| | |||| |||||||||||||||||||||||||  |||||||||  | |||||||||||||    
T  6777860 tggatcatggccgacaacgacaggatggtccg-tcacttgctagagagggttcttaggcagtacgggtatgtccagactattctgagggctcctacagac 6777958  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcacggagttt 148  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  6777959 attgagcttattgcggcagatgacgtggcccaggccttcacggagttt 6778006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 34437959 - 34437814
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||||||  || | |||||||||||| ||| |||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||| |||    
T  34437959 tggatcatggtcggtagtggcaggatggtccg-tcaatttccagagcgggttcttaggcagtacgggtatgtacagactattcccagggctcctactgac 34437861  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcacggagttt 148  Q
    ||||||||||||||||||||||| |||  ||||| |||||||||||||    
T  34437860 attgagcttattgcggcggatgacgtg-gccaggtcttcacggagttt 34437814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 1596416 - 1596270
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| |  |||||||||||||||||| |||||| ||| |||||||||||||||||||| |||||||  |||||||||  | |||||||||||||    
T  1596416 tggatcatggccagcagcgacaggatggtccg-tcacttgccaaagcgggttcttaggcagtacaggtatgtccagactattctgagggctcctacagac 1596318  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcacggagttt 148  Q
    ||||||||||||||||| ||||| ||| |||||||||||| |||||||    
T  1596317 attgagcttattgcggcagatgacgtggcccaggccttcatggagttt 1596270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 34437625 - 34437565
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcctc-agacccataccagatcatcaacaacatcaga 221  Q
    |||| |||||||||| || | |||||||| |||||||||||||||||||| ||||||||||    
T  34437625 tgttaagcagcagtgggctagacatcctccagacccataccagatcatcagcaacatcaga 34437565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 6285902 - 6285770
Alignment:
Q  15 cagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagacattgagcttattgc 114  Q
    |||||| ||||||||||| ||||||  |||||||||||||||||||||||||||||||  |||||||||||| |||||||| |||||||||||||| |||    
T  6285902 cagcgataggatggtccg-tcacttggcagagcgggttcttaggcagtacgggtatgtccagactattcccagggctcctatagacattgagcttaatgc 6285804  T
Q  115 ggcggatgatgtgacccaggccttcacggagttt 148  Q
    ||||||||| ||| |||||||||| |||||||||    
T  6285803 ggcggatgacgtggcccaggccttaacggagttt 6285770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 35014339 - 35014478
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    ||||||||||||| || ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||  ||||||||| || ||||| |||| ||    
T  35014339 tggatcatggtcggcaacgacaggatggtccg-tcacttgccagagcgggttcttaggcagtacgggtatgtccagactattcacagggctcgtacatac 35014437  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcac 141  Q
    |||||||||||| |||||||||| ||| |||| ||||||||    
T  35014438 attgagcttattacggcggatgacgtggcccatgccttcac 35014478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 2029786 - 2029831
Alignment:
Q  33 gtcactttccagagcgggttcttaggcagtacgggtatgtttagac 78  Q
    ||||||| |||||||||||||| ||||||||||| |||||| ||||    
T  2029786 gtcacttgccagagcgggttctgaggcagtacggctatgttcagac 2029831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 7071 - 7213
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| |||||||||||  |||||||| |||||| ||||||||| |||||||||||||| |||||||  ||||||||||| || |||||||||||    
T  7071 tggatcatggccgacagcgacataatggtccg-tcacttgccagagcggtttcttaggcagtacaggtatgtccagactattcccttgcctcctacagac 7169  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcacgga 144  Q
    ||||||||| ||||||| ||||||||| | ||| ||||||||||    
T  7170 attgagcttcttgcggcagatgatgtggctcagaccttcacgga 7213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 38457522 - 38457668
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| || |||||||| ||||||||| |||||| ||||||  |||||||||||||||||||||| || ||||||||||||  ||||||||||||    
T  38457522 tggatcatggccggcagcgacatgatggtccg-tcacttgccagagttggttcttaggcagtacgggtatattcagactattcccagcgctcctacagac 38457620  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttcacggagttt 148  Q
    |||||||||||||||  ||||||  || || |||||||||||||||||    
T  38457621 attgagcttattgcgatggatgacatggcctaggccttcacggagttt 38457668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 12627459 - 12627561
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| || ||  ||||||||||| || |||||| |||||| ||||||||| ||||||| ||||||   ||||| |||||| | |||||||||||    
T  12627459 tggatcatggccggcaaagacaggatggttcg-tcacttgccagagtgggttcttatgcagtacaggtatgcccagactgttcccaggcctcctacagac 12627557  T
Q  101 attg 104  Q
    ||||    
T  12627558 attg 12627561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 12627791 - 12627848
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcctca-gacccataccagatcatcaacaacatc 218  Q
    ||||||||| ||||| | |||||||||||  |||||||||||||||||||||||||||    
T  12627791 tgttgagcaacagtgggtcaaacatcctcccgacccataccagatcatcaacaacatc 12627848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 1326694 - 1326634
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcct-cagacccataccagatcatcaacaacatcaga 221  Q
    ||||||||||||||| |||| ||||||| | |||||||| |||||||||| ||||||||||    
T  1326694 tgttgagcagcagtgggccagacatcctcccgacccatatcagatcatcagcaacatcaga 1326634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 17163 - 17042
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| |  |||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||  |||||||||| | |||||||||||||    
T  17163 tggatcatggccagcagcgacaggatggtccg-tcactttccagagcgggttgttaggtagtacgggtatgtccagactattccgagggctcctacagac 17065  T
Q  101 attgagcttattgcggcggatga 123  Q
    ||| ||||||||||||| |||||    
T  17064 atttagcttattgcggcagatga 17042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 16826 - 16767
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcctca-gacccataccagatcatcaacaacatcag 220  Q
    ||||||||||||||| |||| ||||||||  ||||||||||||||||||| |||||||||    
T  16826 tgttgagcagcagtgggccagacatcctcccgacccataccagatcatcagcaacatcag 16767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 257424 - 257301
Alignment:
Q  24 gatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagacattgagcttattgcggcggatga 123  Q
    ||||||||| |||||| |||||||||||||||||| |||||||||||||  ||||||||| || |||||| ||||||||||| ||||||| |||||||||    
T  257424 gatggtccg-tcacttgccagagcgggttcttaggtagtacgggtatgtccagactattctcagggctcccacagacattgaacttattgaggcggatga 257326  T
Q  124 tgtgacccaggccttcacggagttt 148  Q
     ||| ||||||  ||||||||||||    
T  257325 cgtggcccaggtattcacggagttt 257301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 257112 - 257051
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcctc-agacccataccagatcatcaacaacatcagaa 222  Q
    ||||||||||||||| || | | |||||| ||||||||||| |||||||| |||||||||||    
T  257112 tgttgagcagcagtgggcaagatatcctccagacccatacctgatcatcagcaacatcagaa 257051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 28035687 - 28035824
Alignment:
Q  3 gatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagacat 102  Q
    |||||||| || |||||||| ||||||||| |||||| | ||||||||||||||||||||| ||||||||  |||||||||  |  |||| |||| ||||    
T  28035687 gatcatggccggcagcgacatgatggtccg-tcacttgctagagcgggttcttaggcagtaggggtatgtccagactattcatagtgctcatacaaacat 28035785  T
Q  103 tgagcttattgcggcggatgatgtgacccaggccttcac 141  Q
    ||||||||||| ||||||||| ||| || |||| |||||    
T  28035786 tgagcttattgtggcggatgacgtggcctaggctttcac 28035824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 31117074 - 31116936
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagac 100  Q
    |||||||||| |||||| || ||||||||| | |||||| ||||||  ||||||||||||||||||||||||  ||||    |||| | |||||||||||    
T  31117074 tggatcatggccgacagagataggatggtctg-tcacttgccagagtcggttcttaggcagtacgggtatgtccagacacggcccaggcctcctacagac 31116976  T
Q  101 attgagcttattgcggcggatgatgtgacccaggccttca 140  Q
    ||| ||| | || |||| ||||| ||| ||||| ||||||    
T  31116975 attaagcctcttacggcagatgacgtggcccagaccttca 31116936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 28036021 - 28036081
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcctc-agacccataccagatcatcaacaacatcaga 221  Q
    ||||||||||||||| |||| |||| ||| |||||||||||||||||||| ||||||||||    
T  28036021 tgttgagcagcagtgggccagacatactccagacccataccagatcatcagcaacatcaga 28036081  T

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Target: scaffold0018 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 180477 - 180406
Alignment:
Q  33 gtcactttccagagcgggttcttaggcagtacgggtatgtttagactattcccatggctcctacagacattg 104  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||| |||||| | |||||||| ||||||    
T  180477 gtcacttgccagagcgggttcttaggcagtacgggtatgtctagactgttcccaggcctcctacaaacattg 180406  T

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Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 221
Target Start/End: Complemental strand, 180145 - 180116
Alignment:
Q  192 gacccataccagatcatcaacaacatcaga 221  Q
    ||||||||||||||||||||||||||||||    
T  180145 gacccataccagatcatcaacaacatcaga 180116  T

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Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 32424 - 32354
Alignment:
Q  1 tggatcatggtcgacagcgacaggatggtccggtcactttccagagcgggttcttaggcagtacgggtatgt 72  Q
    |||||||||| | |||| |||| ||||||||| |||||| |||||||||||||||||| ||||| |||||||    
T  32424 tggatcatggccaacagagacatgatggtccg-tcacttgccagagcgggttcttaggtagtacaggtatgt 32354  T

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Target: scaffold0010; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 32089 - 32030
Alignment:
Q  162 tgttgagcagcagtgagccaaacatcct-cagacccataccagatcatcaacaacatcag 220  Q
    ||||||||||||||| |||| ||||||| | || |||||||||||||||| |||||||||    
T  32089 tgttgagcagcagtgggccatacatcctaccgatccataccagatcatcagcaacatcag 32030  T

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