View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8891_high_11 (Length: 309)
Name: NF8891_high_11
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_high_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 25 - 309
Target Start/End: Original strand, 45952704 - 45952985
Alignment:
| Q |
25 |
ttattttattttgtaacatttgatttgttgctttttaaaatcaaaattatgttattagcattcctctagtgttatttgaacatcaaaatacaaatatcat |
124 |
Q |
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| T |
45952704 |
ttattttattttgtaacatttgatttgttgctttttaaaatcaaaattatgttattagcattcctctagtgttatttgaacatcaaaatacaaatatcat |
45952803 |
T |
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| Q |
125 |
atgtgacactatatgtgttttatcnnnnnnnnnnnnnnatcttttacaacttacaagcattttaaaaatacatatacaaatcaaagaacgtcgtatttga |
224 |
Q |
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| T |
45952804 |
atgtgacactatatgtgttttatcttctttttttt---atcttttacaacttacaagcattttaaaaatacatatacaaatcaaagaacgtcgtatttga |
45952900 |
T |
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| Q |
225 |
tatcaaaattttgaagtaaaattgtcttcattgtatggaatctgttatggactagatctaacatattatgcagcccaagatacac |
309 |
Q |
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| T |
45952901 |
tatcaaaattttgaagtaaaattgtcttcattgtatggaatctgttatggactagatctaacatattatgcagcacaagatacac |
45952985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 25818027 - 25818090
Alignment:
| Q |
175 |
ttacaagcattttaaaaatacatatacaaatcaaagaacgtcgtatttgatatcaaaattttga |
238 |
Q |
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| T |
25818027 |
ttacaaacattttaaaaataaatagaaaaatcaaataactttgtatttgatatcaaaattttga |
25818090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 45971653 - 45971691
Alignment:
| Q |
94 |
tgttatttgaacatcaaaatacaaatatcatatgtgaca |
132 |
Q |
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| T |
45971653 |
tgttatttgaacatcaaaatacaaataccgtatgtgaca |
45971691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 39427348 - 39427395
Alignment:
| Q |
93 |
gtgttatttgaacatcaaaatacaaatatcatatgtgacactatatgt |
140 |
Q |
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| T |
39427348 |
gtgttatttcaacatcataatacaaacatcatatgtgacacaatatgt |
39427395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 35620848 - 35620810
Alignment:
| Q |
95 |
gttatttgaacatcaaaatacaaatatcatatgtgacac |
133 |
Q |
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| T |
35620848 |
gttatttgaacatcaaaatacaactaccatatgtgacac |
35620810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 23392003 - 23391963
Alignment:
| Q |
93 |
gtgttatttgaacatcaaaatacaaatatcatatgtgacac |
133 |
Q |
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| T |
23392003 |
gtgttatttgaacatccaaatacaaatattatatatgacac |
23391963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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