View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8891_high_12 (Length: 283)

Name: NF8891_high_12
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8891_high_12
NF8891_high_12
[»] chr8 (1 HSPs)
chr8 (1-283)||(34824375-34824650)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 34824650 - 34824375
Alignment:
Q  1 ttagttatcatagatgaataaatacatcgtgccttacaatacttgcgtgctttgtgctaacataagaccttcacgctatagttagagagtatgagcaaca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    |  ||  |    ||||| ||||||||||||||||||||    
T  34824650 ttagttatcatagatgaataaatacatcgtgccttccaatacttgcgtgctttgtgctt---ttggatgt----gctatggttagagagtatgagcaaca 34824558  T
Q  101 aggtttacatcatttttcttgtgataaatccagtcatacagactacaattttgatgatttagtaacaaggctcgacatttataaacggcaaataaaaccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34824557 aggtttacatcatttttcttgtgataaatccagtcatacagactacaattttgatgatttagtaacaaggctcgacatttataaacggcaaataaaaccc 34824458  T
Q  201 gttccaactcagccatatataagaacgttaattaattgtcgttcaactttacagtaagatccttgtgagtcatcaaaggttat 283  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34824457 gttccaactcagccatatataagaacgttaattaattgttgttcaactttacagtaagatccttgtgagtcatcaaaggttat 34824375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University