View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8891_high_3 (Length: 510)
Name: NF8891_high_3
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 16 - 411
Target Start/End: Original strand, 13518787 - 13519186
Alignment:
| Q |
16 |
cttagtctctcctcccttgcagcaataatgggcacaccacccccaacagttc------ctcaaactactcttgagatagaaactgaaactccaccacaac |
109 |
Q |
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| T |
13518787 |
cttagtctctcctcccttgcagcaataatgggcacaccacccccaacagctcttcaaactcaaactactcttgagatagaaactgaaactccaccacaac |
13518886 |
T |
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| Q |
110 |
tgcaaaccaaccctatggtggctgcttcatcaccgtttgctgtgatccaagagcattatcgccgctttctaaggtttgcttgcatggaggtagtcagagc |
209 |
Q |
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| T |
13518887 |
tgcaaaccaaccctatggtggctgcttcatcaccgtttgctgtgatccaagagcattatcgccgctttctaaggtttgcttgcatggaggtagtcagagc |
13518986 |
T |
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| Q |
210 |
aatcattggattaagtgttggagcgttactcgtatgtgcttttgaatcttcttactacttctcattaaatcctttttatttaaaactaatcgatcgtgtc |
309 |
Q |
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| T |
13518987 |
aatcattggattaagtgttggagcgttactcgtatgtgctttccttgttagttactacttctcattaaatcctttttatttaaaactaatcgatcgtgtc |
13519086 |
T |
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| Q |
310 |
-nnnnnnnncagacatatcttttcttgaagaacaagaaataatagcttgctggtagagtgggagtgtccgagccttaccgtagatcaattgttttcaagc |
408 |
Q |
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| T |
13519087 |
ttcttatttcagacatatcttttcttgaagaacaaga---aatagctagctggtagagtgggagtgtccgagccttaccgtagattaattgttttcaagc |
13519183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 411
Target Start/End: Original strand, 13553581 - 13553980
Alignment:
| Q |
16 |
cttagtctctcctcccttgcagcaataatgggcacaccacccccaacagttc------ctcaaactactcttgagatagaaactgaaactccaccacaac |
109 |
Q |
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| T |
13553581 |
cttagtctctcctcccttgcagcaataatgggcacaccacccccaacagctcttcaaactcaaactactcttgagatagaaactgaaactccaccacagc |
13553680 |
T |
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| Q |
110 |
tgcaaaccaaccctatggtggctgcttcatcaccgtttgctgtgatccaagagcattatcgccgctttctaaggtttgcttgcatggaggtagtcagagc |
209 |
Q |
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| T |
13553681 |
tgcaaaccaaccctatggtggctgcttcatcaccgtttgctgtgatccaagagcactatcgccgcttgctaaggtttgcttgcatggaggtagtcagagc |
13553780 |
T |
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| Q |
210 |
aatcattggattaagtgttggagcgttactcgtatgtgcttttgaatcttcttactacttctcattaaatcctttttatttaaaactaatcgatcgtgtc |
309 |
Q |
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| T |
13553781 |
aatcattggattaagtgttggagcgttactcgtatgtgctttccttgttagttactacttctcattaaatcctttttatttaaaactaatcgatcgtgtc |
13553880 |
T |
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| Q |
310 |
-nnnnnnnncagacatatcttttcttgaagaacaagaaataatagcttgctggtagagtgggagtgtccgagccttaccgtagatcaattgttttcaagc |
408 |
Q |
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| T |
13553881 |
ttcttttttcagacatatcttttcttgaagaacaaga---aatagcttgctggtagagtgggaatgtccgggccttaccgtagattaattgttttcaagc |
13553977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 68 - 262
Target Start/End: Original strand, 13540209 - 13540425
Alignment:
| Q |
68 |
ctcaaactactcttgagatagaaactgaaactccaccacaactgcaaaccaaccctatggtggctg------------cttcatcaccgtttgctgtgat |
155 |
Q |
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|||| ||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13540209 |
ctcagactactcttgagataagaaccgaaactccaccacaagtgcaaaccaaccctatggtggctgtggtgttggctgcttcatcaccgtttgctgtgat |
13540308 |
T |
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| Q |
156 |
ccaa------gagcattatcgccgctttctaaggtttgcttgcatggaggtagtcagagcaatcattggattaagtgttggagcgttactcgtat----g |
245 |
Q |
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| T |
13540309 |
ccaactccaagagtactgtcgccgctttcgaaggtttgtttgcatggaggtagtcagagcaaccattggattaggtgttggagcgttgctggtatatacg |
13540408 |
T |
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| Q |
246 |
tgcttttgaatcttctt |
262 |
Q |
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| T |
13540409 |
tgcttttgaatcttctt |
13540425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 13517890 - 13517954
Alignment:
| Q |
22 |
ctctcctcccttgcagcaataatgggcacaccacccccaacagttcctcaaactactcttgagat |
86 |
Q |
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| T |
13517890 |
ctctcctcacttgcagcaataatggccacaccacccccaacagttcctcaaactgctcttaagat |
13517954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 318 - 411
Target Start/End: Original strand, 13540493 - 13540580
Alignment:
| Q |
318 |
cagacatatcttttcttgaagaacaagaaataatagcttgctggtagagtgggagtgtccgagccttaccgtagatcaattgttttcaagcatt |
411 |
Q |
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| T |
13540493 |
cagacatatcttttcttgaagaagaag------tagcttgttggtagagggggagtgtccgagccttgccatagattagttgttttcaaacatt |
13540580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 408
Target Start/End: Original strand, 13587889 - 13587977
Alignment:
| Q |
318 |
cagacatatcttttcttgaagaacaagaaataatagcttgctggtagagtgggagtgtccgag-ccttaccgtagatcaattgttttcaagc |
408 |
Q |
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| T |
13587889 |
cagacatatcttttgtcgaagaacaagaagta---gcttgctggttgagtgggagtgtccgagtctttgccgtagattagttgttttcaagc |
13587977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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