View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8891_high_4 (Length: 481)
Name: NF8891_high_4
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Original strand, 33353721 - 33354168
Alignment:
| Q |
19 |
atgtggatgggcccatgctaagtgctgggctcaggaaagtccccgggcccaatctgcagaaatgcaggcctggaaacaggtaaatctttgagatggggct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33353721 |
atgtggatgggcccatgctaagtgctgggctcaggaaagtccccgggcccaatctgcagaaatgcaggcctggaaacaggtaaatctttgagccggggct |
33353820 |
T |
|
| Q |
119 |
ggtttcacactttcgggtgtgagggctgagacaagtgtggagcctttgccagtgccgccaaagaaaattggccgattcatacagtcattcacatggtcct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33353821 |
ggtttcacactttcgggtgtgagggctgagacaagtgtggagcctttgccagtgccgccaaagaaaattggccgattcatacagtcattcacatggtcct |
33353920 |
T |
|
| Q |
219 |
tgtgactaacagaacggggcttatgtctctaatccaacaa--nnnnnnnggatattttgattaaaaattataataccttaatcatcttttgtaaaaatca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33353921 |
tgtgactaacagaacggggcttatgtctctaatccaacaatttttttttggatattttgattaaaaattataatacctt-atcatcttttgtaaaaatca |
33354019 |
T |
|
| Q |
317 |
tactagatttaaagatcaattgcacactcttttcgtatgaacaagatcagggcaagaatctttctcannnnnnnnctaatcctgcttgatttggaatagt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
33354020 |
tactagatttaaagatcaattgcacactcttttcgtatgaacaagatcagggcaagaatctttctcattttttttcaaatcctgcttgatttggaatagt |
33354119 |
T |
|
| Q |
417 |
cagtacttgtatagttatatccttcctcccttttatttagttttgaaca |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33354120 |
cagtacttgtatagttatatccttcctcccttttatttagttttgaaca |
33354168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 33752042 - 33752285
Alignment:
| Q |
19 |
atgtggatgggcccatgctaagtgctgggctcaggaaagtccccgggcccaatctgcagaaatgcaggcctggaaacaggtaaatctttgagatggggct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33752042 |
atgtggatgggcccatgctaagtgctgggctcaggaaagtccccgggcccaatctgcagaaatgcaggcctggaaacaggtaaatctttgagctggggct |
33752141 |
T |
|
| Q |
119 |
ggtttcacactttcgggtgtgagggctgagacaagtgtggagcctttgccagtgccgccaaagaaaattggccgattcatacagtcattcac----atgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33752142 |
ggtttcacactttcgggtgtgagggctgagacaagtgtggagcctttgccagtgccgccaaagaaaattggccgattcatacagtcattcacatggatgg |
33752241 |
T |
|
| Q |
215 |
tccttgtgactaacagaacggggcttatgtctctaatccaacaa |
258 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33752242 |
tccttgcgactaacagaacggggcttatgtctccaatccaacaa |
33752285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 8428647 - 8428892
Alignment:
| Q |
19 |
atgtggatgggcccatgctaagtgctgggctcaggaaagtccccgggcccaatctgcagaaatgcaggcctggaaacaggtaaatctttgagatggggct |
118 |
Q |
| |
|
|||||||||||||| |||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8428647 |
atgtggatgggcccttgctgagtgctgagctcaggaaagtccccgggccgaatctgcagaaatgcaggcctggaaacaggtaaatctttgagctggggct |
8428746 |
T |
|
| Q |
119 |
ggtttcacactttc------gggtgtgagggctgagacaagtgtggagcctttgccagtgccgccaaagaaaattggccgattcatacagtcattcacat |
212 |
Q |
| |
|
|||||||||||||| | || |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8428747 |
ggtttcacactttctttcgggagtttgagggctgagacatgtgtggagccttcgccagtgccgccaaagaaaattggccgattcatacagtcattcacat |
8428846 |
T |
|
| Q |
213 |
ggtccttgtgactaacagaacggggcttatgtctctaatccaacaa |
258 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8428847 |
ggtccttgcgactaacagaacggggcttatgtctccaatccaacaa |
8428892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 43250188 - 43250125
Alignment:
| Q |
179 |
aagaaaattggccgattcatacagtcattcacatggtccttgt-gactaacagaacggggcttat |
242 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
43250188 |
aagaaaattggccgaat-atacagtcgttcacatggtcaatgttgactaacagaacggggcttat |
43250125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University