View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8891_low_1 (Length: 745)
Name: NF8891_low_1
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 15 - 446
Target Start/End: Original strand, 5265539 - 5265972
Alignment:
| Q |
15 |
agacacaaattagatataaatagataatcttttattttcagactatcaaatattcatgcaacattttacgatcttagttatgtttacattttaaatttcc |
114 |
Q |
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| T |
5265539 |
agacacaaattagatataaatggataatcttttattttcagactatcaaatattcatgcaacattttacgatcttagttatgtttacattttaaatttcc |
5265638 |
T |
|
| Q |
115 |
ttcaacttggggcgggatgtgtgtgccttagagaaaggttcggaagacaatcaaaattaattt---atggagtaagcaaagaaaaatattgaaaatggaa |
211 |
Q |
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| T |
5265639 |
ttcaacttggggcgggatgtgtgtgccttagagaaaggttcggaagacaatcaaaattaatttttaatggagtatgcgaagaaaaatattgaaaatggaa |
5265738 |
T |
|
| Q |
212 |
aatctatatatttttgacatgatttgggtgagttagtttaatttcttnnnnnnnnttggcatgatacttggttgggggaaatcatctttctcaagcattt |
311 |
Q |
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| T |
5265739 |
aatctatatatttttgacatgatttgggtgagttagtttaatttctt-aaaaaaattagcatgatacttggttgggggaaatcatctttctcaagcattt |
5265837 |
T |
|
| Q |
312 |
cctcgtttattttcattaacacttcaaacaaaaaatagtaaatatcatcaaatggggtgttggaaatataatgtaaggcattgggatcttcaatggtgga |
411 |
Q |
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| T |
5265838 |
cctcgtttattttcattaacacttcaaacaaaaaatagtaaatatcatcaaatggggtgttggaaatataatgtaaggcattgggatcttcaatggtgga |
5265937 |
T |
|
| Q |
412 |
gggaaccttttggaatggggaatcaagctttgggc |
446 |
Q |
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| T |
5265938 |
gggaaccttttggaatggggaatcaagctttgggc |
5265972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 504 - 724
Target Start/End: Original strand, 5265972 - 5266183
Alignment:
| Q |
504 |
cggttgcttcatacttcacatggttttacatttaaatccctatatgttgcgtggaatttatctcgannnnnnnaggggtgttgtcggtagaagctagtcc |
603 |
Q |
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| T |
5265972 |
cggttgcttcatacttcacatgattttacagttaaacccctatatgctgcgttgaatttatctcg---------ggggggttgtcggtagaagctagtcc |
5266062 |
T |
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| Q |
604 |
gaattgtgtgtggcgtccggagactcttgaggtagaagatcatttgttttgtaggtgtccttttgttgggacttgatcattaagtggttcgtaatgtgtg |
703 |
Q |
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| T |
5266063 |
gaattgtgtgtggcgtccagagactcttgaggtagaagatcatttgttttgtaggtgtccttttgttgatacttgttcattaagtggttcgtaatgtgtg |
5266162 |
T |
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| Q |
704 |
tcattctatctgaaaatgtta |
724 |
Q |
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|||| |||||| ||||||||| |
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| T |
5266163 |
tcatcctatctaaaaatgtta |
5266183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 745
Target Start/End: Complemental strand, 43359943 - 43359914
Alignment:
| Q |
716 |
aaaatgttactccctccgtcccaaattgta |
745 |
Q |
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| T |
43359943 |
aaaatgttactccctccgtcccaaattgta |
43359914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 16729015 - 16728917
Alignment:
| Q |
104 |
tttaaatttccttcaacttgg-ggcgggatgtgtgtgccttagagaaaggttcggaagacaatcaaaattaatttatggagtaagcaaagaaaaatatt |
201 |
Q |
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||||||||| ||||||||||| || ||||||||| |||||||| ||| |||| ||| |||||||||||| |||||||| ||| |||||||||| |||| |
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| T |
16729015 |
tttaaatttacttcaacttggtggagggatgtgtttgccttagggaagggtttggataacaatcaaaattcatttatggggtatgcaaagaaaattatt |
16728917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 16717932 - 16717834
Alignment:
| Q |
104 |
tttaaatttccttcaacttgg-ggcgggatgtgtgtgccttagagaaaggttcggaagacaatcaaaattaatttatggagtaagcaaagaaaaatatt |
201 |
Q |
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| T |
16717932 |
tttaaatttacttcaacttggtggatggatgtgtttgccttagggaagggtttggataacaatcaaaattcatttatggggtatgcaaagaaaattatt |
16717834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 590 - 672
Target Start/End: Complemental strand, 16718251 - 16718169
Alignment:
| Q |
590 |
gtagaagctagtccgaattgtgtgtggcgtccggagactcttgaggtagaagatcatttgttttgtaggtgtccttttgttgg |
672 |
Q |
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| T |
16718251 |
gtagaagatggtccaaattgtgtgtggtgtctagagactgttgaggtgaaggatcatttgttttataggtgtctttttattgg |
16718169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 577 - 653
Target Start/End: Complemental strand, 30237758 - 30237682
Alignment:
| Q |
577 |
aggggtgttgtcggtagaagctagtccgaattgtgtgtggcgtccggagactcttgaggtagaagatcatttgtttt |
653 |
Q |
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||||||||||| || || ||| ||| |||||||||||||| ||||| |||||||||| ||| ||||||||||||| |
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| T |
30237758 |
aggggtgttgttggaaggagcgagtacgaattgtgtgtggtgtccgaagactcttgaaccagaggatcatttgtttt |
30237682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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