View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8891_low_21 (Length: 384)
Name: NF8891_low_21
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 13918617 - 13918983
Alignment:
| Q |
1 |
tagaaagaaaaaagaggtccaaaaatgatgtaaaagaaagtgagtgtgagaatataacaattgatacacatacacaccccaccacctttaaattccttat |
100 |
Q |
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| T |
13918617 |
tagaaagaaaaaagaggtccaaaaatgatgtaaaagaaagtgagtgtgagaatataacaattgatacacatacacaccccaccacctttaaattccttat |
13918716 |
T |
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| Q |
101 |
ataaagatatatcgtcttacttattgatctcacactcaatttaattgcttgttctggtcccctctcatatcacttgtacttgaaggagtgtcttgtggag |
200 |
Q |
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| T |
13918717 |
ataaagatatatcgtcttacttattgatctcacactcaatttaattgcttgttctggtcccctctcatatcacttgtacttgaaggagtgtcttgtggag |
13918816 |
T |
|
| Q |
201 |
nnnnnnnncattcattatctcatcttgtttctccttattatatacctcaaatcacccacacggaaacaagataggaaaagctaaaggttttaagatggtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
13918817 |
aaaaaaaacattcattatctcatcttgtttctccttattatatacctcaaatcacccacacggaaacaatataggaaaagctaaagcttttaagatggtt |
13918916 |
T |
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| Q |
301 |
gctcaagtgaaatcccaaaagacatacccgacaactgctgaggtacgatatataccatacaatatct |
367 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13918917 |
gctcaagagaaatcccaaaagacatacccgacaactgctgaggtacgatatataccatacaatatct |
13918983 |
T |
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